Array 1 243183-241574 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIP01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1762 1762_2_length_692293_cov_76.1275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 243182 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 243121 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 243060 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 242999 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 242926 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242865 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 242804 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 242743 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242682 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242621 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242560 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242499 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242438 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242377 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 242316 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242255 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242194 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242133 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 242030 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241969 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241908 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241847 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241786 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241725 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241664 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241603 29 96.6 0 A............................ | A [241576] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260567-259441 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIP01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1762 1762_2_length_692293_cov_76.1275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260566 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260505 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260444 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260383 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260322 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260261 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260200 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 260139 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 260078 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260017 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259956 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259895 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259834 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259773 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259712 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259651 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259590 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259529 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259468 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //