Array 1 45964-44674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWPB01000016.1 Neisseria meningitidis strain NmSHG255 Scaffold16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45963 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 45897 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 45831 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 45765 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 45699 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 45633 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 45567 36 100.0 30 .................................... CACCCTGATATTCCGCAACTCGATATACTG 45501 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 45435 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 45369 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 45303 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 45237 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 45171 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 45105 36 100.0 30 .................................... ATACGAACTCATCCGGAGCCACGCCGAGCC 45039 36 97.2 30 ............A....................... AAAAATAACAGACTCATCAGAAAAATAAAT 44973 36 97.2 30 ............A....................... CCAGCCTACAAACCCTACAATCGCAATCAA 44907 36 97.2 30 ............A....................... AACCGTCTGCACCGTAAATGTAATCAACTT 44841 36 97.2 30 ............A....................... TATCTTTCTCGCCAAACCAACCGTTGTAGG 44775 36 97.2 30 ............A....................... TATCTTTCTCGCCAAACCAACCGTTGTAGG 44709 36 97.2 0 ............A....................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //