Array 1 476178-476384 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBI01000004.1 Cronobacter sakazakii strain SC26 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 476178 28 100.0 32 ............................ GATATTGCTGGTGGACGGGATCGCATCAGGCA 476238 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 476298 28 96.4 32 A........................... ACATTCCACTGACTGTCTGCATCAGACCCGTC 476358 27 92.9 0 .....................-C..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCAAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACAATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 193240-195403 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBI01000003.1 Cronobacter sakazakii strain SC26 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193240 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 193301 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 193362 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 193423 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 193484 29 100.0 32 ............................. AGAGAAAAATAAAACATTGATGCAATGTTGTT 193545 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 193606 29 100.0 32 ............................. CACCTGCGACCGCCGATTTTGATGAGGCGATC 193667 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 193728 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 193789 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 193850 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 193911 29 100.0 31 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATT 193972 29 100.0 32 ............................. TTTTTTCAGTAGCAGGCGGATATTTTTAGCCG 194033 29 100.0 32 ............................. TTTTACGGATCAGGCGAGTATCTGCCCTGGCT 194094 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 194155 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 194216 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 194277 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 194338 29 100.0 31 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATC 194399 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 194460 29 100.0 31 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATC 194521 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 194582 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 194643 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 194704 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 194765 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 194826 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 194887 29 100.0 31 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATC 194948 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 195009 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 195070 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 195131 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 195192 29 96.6 32 ...........A................. ACAGCTGCTGTTTAACCTGCGCTGCTGTGATT 195253 29 96.6 32 ...........A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 195314 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 195375 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GAACGCTGCCCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGTGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATTTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //