Array 1 2604051-2605091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOF010000001.1 Nocardia abscessus strain FDAARGOS_1596 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================== ================== 2604051 28 92.9 33 ..............C..........T.. GAAGTCCTCGAAGAACCGGCCGATGCCGTCGAT 2604112 28 92.9 33 ..............C..........T.. CAAACGCGGACTGACGCAGGGCATGCTGGCGGA 2604173 28 96.4 33 .........................T.. TCGCTCGTACAGGGCGTCCACGTCTTTCCATGC 2604234 28 89.3 90 ............T.C..........T.. GCGTCGAGCAGCTTGGTCCTCAAGTCCTCTTGGGCCGACGCCCTTAATGCCAGATCAGGCATCTTTCCGGTACTTCCGAGCCGATTCCGA 2604352 28 75.0 33 ..TG..GT.....A.CA........... CATCCAGCAGCTACGGAAGCGGCAAGGGTTCAC GT [2604364] 2604415 28 100.0 33 ............................ CCCAAAAAGGAGCACTCCCTCATGTCCGCAACC 2604476 28 100.0 33 ............................ CACACCATCGACGGCGTACGACTGTGCCGCTGA 2604537 28 100.0 33 ............................ CGCCGCGCCCACTAGTCTTGATCGGCAGGCATA 2604598 28 96.4 33 ........T................... CTCGTGGTAGGCGCGCGGATCGCAGATGAGGTC 2604659 28 100.0 33 ............................ CTGCACGCACGTGTACGGCCAGGCCAAGGGTTG 2604720 28 100.0 33 ............................ CTACGCGAGCGAAGATCCGCGCCAGGACGAGCC 2604781 28 100.0 33 ............................ CCGGGCCTCGCTGGGATCGAACTGGACCACCCG 2604842 28 100.0 73 ............................ CTCTCGCTCGGCGCGGCGGGAGTCTTTCGTGGTGTGCTCCCCGCGCACCGACCCGGCCGTCCTTGACCGCATA 2604943 28 96.4 32 .................T.......... CAGGATCCGGTAGTGCACGGGCGGGGACGGTA 2605003 28 96.4 33 .............A.............. CGGCACCAGCGCGGCATAGATGCGGCCACGTAC 2605064 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================================================== ================== 16 28 96.0 39 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : GCCGTTGAAGATCGCCAGCCTGATCACCCCGGAAGTCGCGGTGCGTATGGCCGATGGCATCCGTGGGCAACGCTGGGTGTTGAGCTGGCTGCCGCAGCGGGTGTTGACCCGCCAGCAGGCGTTCAGCGGCATGGTTCTCGACGAGATCCTGACCGACCCAGACGATCTCGACAGCGCCACGATGATGCTTCTTCTGACTGAACTTGCCGCGGACCTCGCGATGCCGCTCGAGGAGGTCCTGTTCCGTCTGTCTCATGTCAAGAAGGACGAGAACTACCCGCGATACCGCTGGAGCCGGTGTACACGGCCTTTGGGCAGCCGCGTGGTTGACCAGGCTCTAATGCGAAAGGCGGAATAGCGTAGATGGGACTGCCTGGTTCAGACCGAGAGGCGTAAGTAACGGCGAACTGTCGGCGACCGCCGCCTACGACTCCGCTGTTGGCGGAACTCGTGGGGCTTGTTACGTAGGTGAGTGAACGATCCCGGCGAGCAGAGGTACC # Right flank : CCTGCGGTGTCAGATGGGTGGGGGCTAAAAGCGGCGGACGAGCATCCGAGACCGGATCACCGCCGGACTGGTATCGAGCCACACTGTCACCACCGGCACCGCTTCCGTCACGCCCGTAGAGGCGCGCAGATAGTGATCCAACCGCATCTCGCGCGCGGCGACGTCACGGATCGTCGACAGGAACGGTGCGTCCAGCACGATGGGGAAGGCCGCCGCGAGGGTGAGGCCGGTCCGGATGAGTCCGTCGTAGATCCCTGGGGCGACGAGCGACCGGTAGGTGTCGGAGTCGCGGTCGAACCGGTCACCGGTCAATCTTCCCATCACCGATTCCTCGAGTAACGGCGCGAACCGGTCCTTGTCCAGCACCGCCGTACCTAGAACGCGCGCCAGAAAGTCCGCGGCCGTCGATTTTCCCGACGCCGGAAACCCACACACAACAACCACACCACAGCTACCCAGTCCGCCGACCGCGTCGCGCAACACCTCCCGCTGCGACTCGG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.47, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2606381-2607568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOF010000001.1 Nocardia abscessus strain FDAARGOS_1596 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2606381 28 100.0 33 ............................ CACCACACCCTCGGGCGGCCCCGACCCGCTGCC 2606442 28 100.0 33 ............................ CCGAGCACCATGCGGACTATGTGGGCCAGGACC 2606503 28 100.0 33 ............................ TCCGCGTCAGGATCTCGGCAAGACGCACGACGC 2606564 28 100.0 33 ............................ CCCCGAGTCCGTCGAGCGGGCGATCCACAACTG 2606625 28 100.0 33 ............................ CGGCTATGCCGTAGATGCCCTAGATAGGGACTT 2606686 28 100.0 33 ............................ CTTCCCGACCTCGCGAGGGTTCGTAGCCACCCA 2606747 28 100.0 33 ............................ CAAATACTGGGTCGACTGGAGCGATGCGAGCTT 2606808 28 100.0 33 ............................ CGTAAAGTTTCTTGTTCGTTGGTGGGGCGGCCT 2606869 28 100.0 33 ............................ CTCGGCGCCGAGCGAATGCCCAACCACGGTCAC 2606930 28 100.0 33 ............................ CTCGCCCCCGTCCGCGCTGGACCGGGGCGAGCT 2606991 28 100.0 33 ............................ CCACAGCGCCAGCAGAGTTCACCCGCCGAGTCG 2607052 28 100.0 33 ............................ CCCGTCCATCAGCTACGACGGCGCGACCAACAC 2607113 28 100.0 33 ............................ CGAGTCGCAACCATGATCATTCAGTTTGATTAG 2607174 28 100.0 33 ............................ CCTCGCGTTCGAGCGCGACTGGGCGGTCTGGGA 2607235 28 100.0 33 ............................ CAGCTCCTCCATCGTGGGCTGCGTCATGTGGCC 2607296 28 100.0 33 ............................ CGCACAGGACGGGGGTCGACACGCCCGACAGAG 2607357 28 100.0 33 ............................ CTGAACCAGGGTGTCCAACTCGATCCCAGGTTC 2607418 28 96.4 33 ...............T............ CGTGATCGACGAAGCGACCGTGCCGGTGCTCGA G [2607435] 2607480 27 92.9 32 ...........T.............-.. CGTCCGAGGTTCGGGTTCGTTACGACTTCGGT C [2607501] 2607540 28 71.4 0 ...TAG...A..T....C......G.A. | C [2607563] ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.0 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : CCCGGCGGCTGCCAGCAGTCCCAAGTAGTCGCTCAACGCTCCGAAATCCACCGCACCAGAGGCCCGAAACGGAGTCACCACCGCCACAATCACAGAACTCGCCATCCCTCGATTCAACCGCCCACAGCAAGCCTGAGGCGCTTGCCTCGACGACAGGCCACGATGTGACGTGGTCAGATGCGGCGATTCCGGCACCTGGCGGAGGTGAATACGGCGCTGGACCCCATTCCGGCGTGCGCCTGCAGGGCCGGCAGCGCACACGGACTCTCGCTCGTCTTGGGTTGTACGCGGACGACCGAGCGTGCGACTTTTCGAAGGATGGTAGACATTCGAACTCGGCGAGAAGTGTCCGATCCGCAGCTGCTTGGACGGCAAAATAAATGCAGCGAACCGCACGATCGGTGCAAGGCCATCAAACGAGTCTGGATCGGAGCAGTCGATCGCTCACAAAAGTGAATGAAAACCAGCTCGCCCAGCAGAGAACATGCTGGTCAACAAGT # Right flank : CGGCGACCGAGCCGTGTGGCTCGGCCGCTACCTTGCGTGCTGCTGGCTGAGGACCCTTTGTGGATAGCGAAAATGTTTGAAACGCAGCATAAGTGGGTAAGGACTGCTACCTTCGATGCGCGGACAGCCTGGCGTCGAAGTTGGGGCGCGAAGTTGTCGGTGTGGGGCTATATCGTTCGGCGCGTACGAGGGTCTGATCGTTATGGGGGCATGGTGCTGAGTAGGGCGACGTTGTCGGCCTGGGCCAAGAGTGACCGTGATGGTGGAAGCCTTTCTCTTGTCAGGCACCTGGCTGATTCTGCTGAGGTTGCGAAGTTGGTGTGGGATCACTGGTTGCCGCGGCATACGCGGGAGGTGATCTGTGATGGGCTTCCGGCTGGTGAGGCTGATGGGCGGTTGCTGCTGTGTTGGCTGGCGGGTGTGCATGATCTCGGGAAGCTGACGCCGGCGTTCGCGTGTCAGGTGCCGGGGTTGGCGGATGCCATGCACGCCAAGGGTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2616669-2617547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOF010000001.1 Nocardia abscessus strain FDAARGOS_1596 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2616669 28 100.0 33 ............................ CTCGGAGAGCTTTCCGGAGTCTCAGCGGCATAC 2616730 28 100.0 34 ............................ CAGATAACGAACAATGGTGCGGGCGTACCGTAGA 2616792 28 100.0 33 ............................ CTCGTATCACAGACGTCTGACATCAAATCGAGC 2616853 28 100.0 33 ............................ CATGAGCCACTCCGCGAACGCCGCCGACAAGCG 2616914 28 100.0 33 ............................ CCCGGAAAATCGTCGATCGTCGAATCGGCACAT 2616975 28 100.0 33 ............................ CTCCTCATCCGAGCCCGCGCCCGGAAGCGCCGA 2617036 28 100.0 33 ............................ CACGGATTTGCCGAATCCTGGTGTGCCGTAAAC 2617097 28 100.0 33 ............................ CCAGGCTCGCGCTTGCGGATCGAATTTCTCGGC 2617158 28 92.9 33 ..C..........G.............. CTTGCGAGGGGTGGCAGATGACCATCCCGTTCA 2617219 28 96.4 33 ...T........................ CGTGCGGTGATCGATGCGCCGCAGCCAGACGGG 2617280 26 92.9 33 ........--.................. GGACTCGGCGTGACCGGCGCGACGACCACGCCG 2617339 28 100.0 32 ............................ CCGCGACATAGAACAGCCGGCCCGGCCGACGA 2617399 28 100.0 33 ............................ CTGCGCCCAGGTGGAGCACCCGGCGGGAAATCC 2617460 28 92.9 32 ............TA.............. CAGGCCCAGCGCCCGGATACCGACCTCACCAA 2617520 28 82.1 0 A..........A..T.......GT.... | ========== ====== ====== ====== ============================ ================================== ================== 15 28 97.1 33 GTGCTCCCCGCGCCCGCGGGGATGAGCC # Left flank : AGTGGGACACAGACATTGTCGAGTTGTGGGATCGCAAAGGCAATGTGGCAGGAGGTATCTCCTACGGCGACGAGGACCTGCCGTGGTAGTTCTCGTGCTCAGCGCTTGCCCCGCCGGCCTGCGTGGCCACCTCACCCGCTGGTTCCTCGAAATCAGCCCCGGCGTATTCGTCGGCATCGCCAGCGCACGAGTACGGGAGCTTGCCTGGCAACGCGTCGTGGAACTCTCCAAAGACGGCCGCGCCATCATGATCCACTCCACCAGAGGTGAACAGCGACTCGCCTTCAAAGTCCACCACCACGACTGGCAACCCACCGACTTCGACGGCATCCACCTCATGCGCCGACCACACACCAGCGACGTCAAGCCGGGAGGAGCCCGCGCCGGATGGAGTAAAGCCAGCCGCTACCACCGGGCGGCCAAGAAGCGCACCCTCGACCCGCCGCGCGAAAGTGAATGAAAATCGAGAGGGCTGCCGAAGAACCTGCAGGTCAGGAAGT # Right flank : CCATGTCGCGGTCCGTGCCGCGGGATCACAGGTGATGACGCCGTCATCACCTGTCAGTGTGATGCACCTGTTTTGGCTGGTGATGACCATGTCATCAGCTGAGTGGTACATTCCATATTGAAATGTAGCGACACGTCGTGAAACGGCAGTTGAGCGGCGGCGATGTAGCAAGGCCAGCTTCTTGACCAGGCCTTTTGCGCCAAGGCGGCCGAGGGTTCGATTCCCCCAGGCGGCTCCACGTAAAGCCAGGTCACCCGTGGTTTCAGTATCCTGGAACCGCCTCGTTCTCATCTCTGTGGGTCATCACCCTGCTCGATGCGAGTGTCTTCCGGCAACCGGATGAGGTGTTTACGAGCCTTTTGCTCGGCGGCCTCGGCGGCCGCCTCCCAATGAGTGCTGGTGCGCGGTCTGCAGCAGCATCGCGAACAGAACATCTGCCAGCTCCGGGGGCACCCGGCGGCGCCGCGGCGGCAGTGCCCGCTCGCTGGGCACGCTCGACA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 7825150-7824999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOF010000001.1 Nocardia abscessus strain FDAARGOS_1596 ctg.s1.000000F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7825149 29 100.0 32 ............................. TCCCCGACCGTCCCGGTACGTCCCGGCCCGGT 7825088 29 100.0 32 ............................. CGCTTTCGTACTTGAGCCGCCGACCGATCCCG 7825027 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCACCCGCGGGGATGATCCG # Left flank : GACGAACGCGGCGCGGATGATGGGCGTGATCTGATCCGGGTGGGGTGGAGTGAGGCTGGCGATCAACTCCTCCACACTCACCGCGGCTGGCGTTTGACCGGTCGGCTCTAACTCATCGACGGCGTGGGTGTCGTAGCTGGGAACGGGGTGCCTGCCAGTGCTGGTGGAATATTCAACAGGGTTGGTTGGCCGATTCTCCATGCAGTACCTCCCGGATCACTTGTGCTTGCAGGATGGTGAGGTGGCAGTCTTACGCGCCGCCGAGGTGGTTGATGGTGTCAGTGACGGTCAGGCGTCGACCTCGGTGACTGCGTGCGTGTGGTTCCGCTTGTGAGGTGTCTGTGGGTTTGCTGTTCATGCTCGGTGCAATGTGGGTGCTGATGCAACGGCATTTGTCGGTAGTCGGGGCTGGACTGCGGAGCCCGGCATTAGGCATCTTGCCGGATGTCAAACCGATTGAAGATCGGCCGCTCTGGCAAAATACTTGCTGGTCAAAAAGT # Right flank : ATTTCTGTCGCCACATCAACTGCTTCGCGCGGGTGCTCCCCCCCAAGACCGACAACGGCTGGCGGCGCATCCTGCTGCCCGCCCACACCGTCGAGGCCGTCCGAGAGGCCGTCAAGGACCTGGAAGTCGGCGACCGCCCCAACCCGATGGGACTGCTGTTCCCGGCCCGCAACGGGTCGCTGCGCAACCCGAACAACTTCGGCCGCACCTGCGTGCAGCACGCGGGGAGAACTTCGCCTGGGTGACCCCGCGCACGTTCCGCAAAGGCGCGGCCACCGCGGTCGACCACGCCTACGGCGACCCCGAACGCGCCGCCCGCCAGCTCGGCAACACCCGCGCGGTGGCCAAGGCGCACTACATCGACGTCCCGGAGACCGTTCCGGACAATCGAGACGTGCTCGAGCGGTGGGCTCGGGGCTCCACCGGCCCGAAAACGTGAGATTTCTGTGAGAACCGCTCGAATCCGAGCCCGTCACCGGAACGAGAAAACCCCTTCCGAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //