Array 1 185374-185828 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEC01000002.1 Salmonella enterica subsp. enterica serovar Hvittingfoss strain 2011K-1721 NODE_2_length_230798_cov_1.76002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185374 29 100.0 32 ............................. CTCCATCACCCGGTCAGCAAAACGCGTGGAAA 185435 29 100.0 32 ............................. AGAGTGATGCTGAATTTATCGCCGCCGCTAAT 185496 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 185557 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 185618 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 185679 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 185740 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 185801 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 202086-203315 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEC01000002.1 Salmonella enterica subsp. enterica serovar Hvittingfoss strain 2011K-1721 NODE_2_length_230798_cov_1.76002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202086 29 100.0 32 ............................. GCGCGGTTCTGCGCCCTGTTTCCAGTTCAGTA 202147 29 100.0 32 ............................. CGGTAACAGGCACGAATCAGGCGTGTCGGCGT 202208 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 202269 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 202330 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 202391 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 202452 29 100.0 12 ............................. CATTAAAAAAAA Deletion [202493] 202493 29 62.1 32 CAT..G.TATA.GTG.............. TGGTTGTTAATGCTGGCGATATTTTTAGCACA 202554 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 202615 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 202676 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 202737 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 202798 29 100.0 32 ............................. GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 202859 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 202920 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 202981 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 203042 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 203103 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 203164 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 203225 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 203286 29 96.6 0 ............T................ | A [203313] ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //