Array 1 18428-23833 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765899.1 Mycoplasma ovipneumoniae strain TC1 scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 18428 36 100.0 30 .................................... CATTACAAATCCTTTTGAATCGGGATCATA 18494 36 100.0 30 .................................... ATCTGAGTCAAAAATAGCTAACTTATGACC 18560 36 100.0 30 .................................... CTCCACCCGGACCTCTTGCTCCGGTCGCTC 18626 36 100.0 30 .................................... GCATTTATTAAAAGACTACACCGGAATTAT 18692 36 100.0 30 .................................... CCTTGTTCCCCTTTTTCTCCTTTTAGTCCC 18758 36 100.0 30 .................................... GTCTGAGTCAAAAATTGCTAATTTGTGTCC 18824 36 100.0 30 .................................... ATATAATAGAAAAAAGGTGAGTTAGTGTTT 18890 36 100.0 30 .................................... ATTAAAGGCCAATTTTCCTTAAAATCACCA 18956 36 100.0 30 .................................... TTATTAATAAATCAATTTGATTTAGATCTC 19022 36 100.0 30 .................................... CTCTTGAGAATGTTGTTGATGTGGCTGCCA 19088 36 100.0 30 .................................... AATTTGCCCTCGACTTAGAAAAGCAAAATG 19154 36 100.0 30 .................................... AATACTCAATAAATGCCTGAGATTTTATAA 19220 36 100.0 30 .................................... GACGCGGCAAACATTCTTACAGAACTGTCC 19286 36 100.0 31 .................................... AATAAAAACACAATAACTGCTTCAAAAAATA 19353 36 100.0 30 .................................... TCTCATTCTAAAAATTTAATATTATTAACA 19419 36 100.0 31 .................................... TGGAAGAGAAGCAAAGGGTATACCAGTAGTG 19486 36 100.0 30 .................................... CCGCTGCCAAATTCCTTATATTTTATATCA 19552 36 100.0 30 .................................... GAGAGAGGTGCAAGAGGAGAAAGAGGCGAA 19618 36 100.0 30 .................................... TTAAAAATTACTATTTTAAATGCGGTTAAT 19684 36 100.0 30 .................................... ATCAAGTATACCTGTGCGAAGAATTACTGA 19750 36 100.0 30 .................................... TTTTTTAAGTCTAAATAATAACTTCAGGGT 19816 36 100.0 30 .................................... CCTTTGTCTCCTTTTTCGCCTTTTAATCCA 19882 36 100.0 31 .................................... AACGGGCAATAGCAAAATTTTATGCCACTCA 19949 36 100.0 30 .................................... TGTTTGCTGCGTCAGCAGACTTATTTGTAA 20015 36 100.0 30 .................................... TTAGTTCAATTGTTCCTTTTTTTAGGATTT 20081 36 100.0 30 .................................... TGAAAGTTTGCTTAAATATATGTGAAATAT 20147 36 100.0 30 .................................... AAACAATATTGTATTAAAAAAGAAGCATGA 20213 36 100.0 30 .................................... CGTGCGTCTTGGTATTTTTGAACTCTACCC 20279 36 100.0 30 .................................... ACATTGGTATCATAAACAAAATAGTGAATT 20345 36 100.0 30 .................................... TCAGTATGAGCCAAAACTTTTTCAGATTTT 20411 36 100.0 30 .................................... TTTTGCTCTAATTCTTTTTGATCTTGTCTA 20477 36 100.0 30 .................................... CAAAAAAACGCAAAATTTAATAATTGACCT 20543 36 100.0 30 .................................... ACCTCCTCTCCAGAGCAAAGGTTCCCCCAA 20609 36 100.0 30 .................................... AGCAGATACCCTTTTTTGATTAATTTAAAC 20675 36 100.0 30 .................................... AACTACCCCCTATTTTGTGTCTTAATGATA 20741 36 100.0 30 .................................... AAGGGAAATTGAAAAAGTGTTTGTTTGTTC 20807 36 100.0 30 .................................... ACTTTATATACAAAAAGTATTAGTCATCTC 20873 36 100.0 30 .................................... TTTTTGAAAATATTTCATTAGCATTTTGAT 20939 36 100.0 30 .................................... TCTCATCCCTAGATCATTTTTAGACATTTC 21005 36 100.0 30 .................................... CTTAAATATTCTTTATTACGCCGAAGAAGC 21071 36 100.0 30 .................................... CTATCCATTTGTTTTAAAACAACCGCTTCC 21137 36 100.0 30 .................................... TTTCAAAGATGTCTATGGTTATGCCTTGCC 21203 36 100.0 30 .................................... CACCTTTCAGTCCTTGTAGACCTTGAATTC 21269 36 100.0 30 .................................... GATTATAGGGGGGGTTAATTTTAGGGGATT 21335 36 100.0 30 .................................... TTTTTAAGTTTTCAGCATTGACTATTTTTT 21401 36 100.0 30 .................................... TTTTTTTTGTTAGGGGCCTTTTTGTCATTG 21467 36 100.0 30 .................................... CACCTGCTCAAAGACTACACCGGAATTATC 21533 36 100.0 31 .................................... TTTAGATCGTGTAATAACAGATCCCGTTCTC 21600 36 100.0 30 .................................... TAAGACTTCCAGGTTGCCTACCAATTCCCG 21666 36 100.0 30 .................................... AGTAATTTTCTTTGACGAGTTTGTCCCGTT 21732 36 100.0 30 .................................... TGGTTTTATCAACTTCTCCCCAAATTTTCC 21798 36 100.0 30 .................................... AAGAATATGACGGTCTAGAACTAAAAACTT 21864 36 100.0 30 .................................... CTGTAAGGAAGTTTACAAACAAAACCGTTC 21930 36 100.0 30 .................................... AAAAATGCCTTAACCCAAAATATGAAAAAT 21996 36 100.0 30 .................................... TTTTTAAAAATAAAAATATGGAAATATTCA 22062 36 100.0 30 .................................... TGCCGCATATAAATCTCTTTGATTTTCAAT 22128 36 100.0 29 .................................... AACAATTAGCACCGCATGGTCTGAATTGA 22193 36 100.0 30 .................................... AGATATCGCAATAATACGTTCAAAAAAATA 22259 36 100.0 30 .................................... CTCTTAAAGGCACACCATTTTTTGAATAAA 22325 36 100.0 30 .................................... CGGATTAGACTTAACTAGACTAAACGATCC 22391 36 100.0 31 .................................... AAGTCTAATCCGTCAGTATTTACTTCAATAT 22458 36 100.0 30 .................................... TAAGGGCCCTTTTTATAAGGGGGGGGATTA 22524 36 100.0 30 .................................... GCTACCGGAGCAAGGGGTGCAGCAGGTGCT 22590 36 100.0 31 .................................... TTTACAAGGACTGAAAGGTGAGACTGGTGAA 22657 36 100.0 30 .................................... TTTCAAATTTTTTACTTTTTTTTGAAAATT 22723 36 100.0 30 .................................... GGCGTTATTAGACTTAACAAAAACAATCTC 22789 36 100.0 30 .................................... AGGACTATTAGTTATTTGAGATATTAATAA 22855 36 100.0 29 .................................... TTATCACCGTCGGCTCAACAACGCGTATA 22920 36 100.0 30 .................................... GTAGTCCCGAGGCAGCATAGTATAAATGTA 22986 36 100.0 30 .................................... GCTCTTCGATTATTAAATTCAGTTCAGGCT 23052 36 100.0 30 .................................... AATTACTCAATATATTGAACTACATGCTTT 23118 36 97.2 30 ............C....................... CTAAATAGTTCTGATATTTTAGTCAAAAGA 23184 36 94.4 29 ..................................CT CATCTAGAAATTACCAAACCATCTAGATT 23249 36 97.2 29 ...................................A CTATTGCTATTTTGACTAGAACTTTTTAA 23314 36 91.7 31 ............CG..........T........... AGAAAAAAGAAATACCTTTTCGTCAGAAAAA 23381 36 97.2 30 .........T.......................... CATCCAAACCCACATAAGAATCTAATTTTT 23447 36 86.1 30 A........G..........A...T..........T TTAATTTTATTCAAAAAAATTATATTAAAG 23513 36 86.1 30 A........G..........A...T..........T GTAAAAATTATTGTCTAAAAAATCTATATC 23579 36 91.7 35 .........T..........A..G............ TAAATTTGATTTTTTTTTTTTTTTTTTGATTTTTA 23650 36 94.4 46 .........T..................T....... AAAATTTTTTTCTGCTTTATATATACTTTATATATAATTATAAGTA 23732 36 94.4 30 ....................A...T........... TATCATGAACTTGAAACAAAAAATCAAGCA 23798 36 88.9 0 .......CCT....T..................... | ========== ====== ====== ====== ==================================== ============================================== ================== 82 36 99.0 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : TTTAAACTATGAAATTGATAATGTAAAACTAATTAAAGCAATTTTTAACATCGAAAATGATATATTAATAAATAAGGAAAACTTTAAGAATCTTGCCGAAATTATTTTTAGTACAATGAAACAGACAATTGTAATTCTGAAAGATCTTGATTATATAAAATTTGAAAAGCTGTTTAAATATAATAATATAACTTTCCTAATTTTGACAAATGATTTTACAAAATATATTTCTAAATTTAGTGAACTTGAATTAGTTGCTTTTTATTCACAGAAAACTGTAATTGATGTAATTGATAATTTGCCGATTATTCGTTATTTTGAAAATCTCAAAAATCGGCCTGTCGATGAAGATGAGCTAATATACACTTCTGAAGAAGAGAGAATGGCAGCAAAAATGCATTTTTACAAAATAAAAACAAGTTTTTTAAACTAAAAATCCTTTTATAATTGATTTTTTAGTGTAAAAATCAAAAAAAATACCTTTTTTTCTTGGAAATGAG # Right flank : CTGAATTTGATTTTTTGTTTTTTTTTTTTTTTTTTTNGATTTTTTACTTTTATACTGTATAATTTGTTACTAGAGTAAAACCACTCTACTTATAATTTATCATTATAGTTTTTGCTCTACACAATTTCTTGCTAGATTAAAACTCATATAAATAATTATACCATATTTTCGGTGTTTTTGCTCTGCATAATTTCTTACTAGAGTAAAACAAAACTAAAAATAAAAATGTAAATTTAAAAAGGAGTAAAATAAAATGAAAAAACAAAATACCAAAACTAATAAAAAGGAGTTTAAAAATGTTAGACATTATCGAGTTAGAAATAAAAAATATGTTGCCTAAAAAAAGAGAAGAATTCTATAAAGCGGTAAACGGTGAAATAGGTAAAAATCAAAAATCTAACCAACTAAAAATTCAAATTGGAAACAAAAAAATAGAATTTGATGAAATATTAGATGCCAGTTTTAGAGAATATCCTGATATGTTTATCAACTTCCAAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //