Array 1 72915-71017 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTB01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss17 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72914 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 72853 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 72792 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 72731 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 72669 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 72608 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 72547 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 72486 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 72425 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 72364 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 72303 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 72242 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 72181 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 72120 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 72059 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 71998 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 71937 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 71876 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 71815 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 71754 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 71696 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 71635 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 71574 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 71513 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 71452 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 71391 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 71330 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 71269 29 100.0 11 ............................. CGGCCAGCCAT Deletion [71230] 71229 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 71168 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 71107 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 71046 29 93.1 0 A...........T................ | A [71019] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90813-89197 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTB01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss17 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90812 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 90750 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 90689 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 90628 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 90567 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 90506 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 90445 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 90384 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 90323 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 90262 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 90201 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 90140 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 90079 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 90018 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 89957 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 89896 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 89835 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 89774 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 89712 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 89651 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 89590 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 89529 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 89468 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 89407 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 89346 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 89285 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 89224 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //