Array 1 208900-206093 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAA01000004.1 Pectinatus cerevisiiphilus strain DSM 20467 Ga0244680_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 208899 30 96.7 36 .....T........................ TTGTCTGTAGGATATATTAATGCAACATATTTTTAC 208833 30 96.7 37 .....T........................ ACTGACATTATACCAGCATCACTATTTTCTAAGGTTT 208766 30 96.7 37 .....T........................ TGTAATTGTTTGGTAGGAGCGGTGGTAATACGCATTT 208699 30 96.7 36 .....T........................ TAGTGTCCTTTTGTTTAACATCACCTATTGTGTTGT 208633 30 96.7 36 .....T........................ GCTAGATTCGGTGTTTGCTTTTTCGTTGGCAAGTTT 208567 30 96.7 36 .....T........................ TATTTTAGGTCGATTATATCGAGATGGCCGTCGTAA 208501 30 96.7 36 .....T........................ TCACATCCGAGGGCGGCTTACTTTTTGTCATGTCAA 208435 30 96.7 36 .....T........................ GTTTTTAGACTTTGTACTTGTGGCATTCTGCAAATG 208369 30 96.7 37 .....T........................ TCGTTTTCATTTTAAATTTGTCCCGACCTGTCGTATA 208302 30 96.7 36 .....T........................ TGTTTTAAAACTTTTAGGCAGCCTACGACATCTTAA 208236 30 96.7 36 .....T........................ GAGCGTTTTTTGTGTGCGCAATTTTCCTTCAATTTT 208170 30 93.3 38 .....T.......................A TTCATCTCTTTTGTAATTACTATTCTATATTATTTTGA 208102 30 93.3 36 .....T.......................A TCAGCAAGCAACGTCGTTGCATGGGTATGCCGTAGT 208036 30 93.3 36 .....T.......................A CTGACATAGAATATCAAACCACACTGCGAAAATTAG 207970 30 93.3 36 .....T.......................A TTGCATGATATTGCTCAAAGTCCGAGTCACCTGTCG 207904 30 96.7 36 .....T........................ GCAGTTAACGAATACTGTGCTGTGATCGGGTGCATG 207838 30 96.7 36 .....T........................ ATGAGTGTTTTTATTTTTTCTCTGCATTTGTCATAT 207772 30 100.0 36 .............................. ACAAACAGTACCTGCGGGCTAACAATTTTCGGCTGT 207706 30 100.0 36 .............................. GCTTATACATGATTCATTTGGTACAGATTTAGGTAA 207640 30 100.0 36 .............................. GATTATAGCGGATTTAAGCCATATATGGAGTTATTT 207574 30 100.0 36 .............................. GAATATACGTGGTAAAAGGAAAACTCCTGTAGTTAT 207508 30 100.0 36 .............................. TGCGTCATTGACGATGGACAGGGCGGGACGTCGGCA 207442 30 100.0 37 .............................. TTAAATATAGTACCAAGCACTGTACCGCTACCGCTTG 207375 30 100.0 36 .............................. TTTGCCGACAATTATAGCAGATATTTAATGATTTAA 207309 30 100.0 36 .............................. ATTATTTGTACTTTAGCATTACTATTAATACACTGT 207243 30 100.0 36 .............................. TAGCCGAGTCTAAATTATCTGTTATAAATACAACTT 207177 30 100.0 36 .............................. TAATCCAACACCTCCTTGCTTGTCACTAGCCCATAA 207111 30 100.0 36 .............................. TCCTGCAACTGCTTACGGATATACACAGGAGATAAC 207045 30 100.0 36 .............................. AAGTTTTAACGTGATCCAGTCAGGCGAAAACCTTGT 206979 30 100.0 37 .............................. ATACAGGCAATCAGTCTGCGGCTACCAATACAGGCGA 206912 30 100.0 36 .............................. AGCGTTATAAAATGTTTGTCTTTTGTACGCAGCTTT 206846 30 100.0 36 .............................. TTCACCAGCTGCAACCTTGCCATTAAACGTTAATGA 206780 30 100.0 35 .............................. TCAGCACTTAAAGCTGTACCTGTTACGTTAGTATC 206715 30 100.0 36 .............................. GCGCTCTATGACAACATCTTTTTTGGAGATACTCCA 206649 30 100.0 36 .............................. CTACTTGTTCAGCGGTAGGTGCTGCTGGTTGAGTCG 206583 30 100.0 36 .............................. ATCGATGGGCTTACGTTATACAAAGAAAATAAACCG 206517 30 100.0 36 .............................. TGGTTATATAGCTGGTTATGGCCTCCGTGCGTTTAT 206451 30 100.0 36 .............................. AAGTTTTTGCCTCTGGTTTTAGTATTTTAGGCATAA 206385 30 100.0 36 .............................. CCGATCATCGTCGCCCAGCGTAAGCTTTTTTTCTTT 206319 30 100.0 36 .............................. AAGATAGTTGCTGATATACTCATTATTTATTCCTCC 206253 30 100.0 35 .............................. GCTTTAGATGGCCCGGCAAGCAGCATTTTATGTCC 206188 30 100.0 36 .............................. CCGATGCTTTGAACTTCGTTGATAGGAACTTTGTTG 206122 30 93.3 0 .........C........C........... | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 98.2 36 GTTTAGAATTGAGCAGAATGTAATGTAAAT # Left flank : TGAAGCATCTGTATGAATGTAATACCGAGACAATCCTTGGCTAACTTTAGTAGCAATGAGGTCTATGATTTTGCGAAAGAATATTGACAGTACCGCTACAATACACGTTACATCCAGA # Right flank : GCAGGTAAACTGCAATAACAGGACTAAGGTTTTGAAAAGAATATGTTTCGGTGCCAGGAACTTTAAAAGTAAGCGATCAATCAAATAGTGTATAGCAATAATGCCGCTGGTATTATATTTACTATACAATACCAGCGGCATTTTAAGATACTATAATATTATTTGGTTAAATGTTTATGATTTAAACAGATGTAAGATATCAGCTACGGCTTATTACATCAATACCCATATATTTGCGCAAGACTTTTGGTACAATTACGCTGCCATCAGCTTGCTGATAATTTTCTAATATTGCCGCTACGGTTCTGCCTACAGCAAGACCGGAACCATTCAATGTATGAACATATTCTGGTTTTGTTTTAGGGGAACGACGAAATCTTATGTTGGCACGACGTGCCTGATAGTCTTCAACATTGGAGCAGGAAGAGATTTCTCTATACATATTACAGCTTGGTAACCAAACTTCAATATCATAGGTTTTGGCTGCGGTAAAGCCTATA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATTGAGCAGAATGTAATGTAAAT # Alternate repeat : GTTTATAATTGAGCAGAATGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 35774-35198 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAA01000006.1 Pectinatus cerevisiiphilus strain DSM 20467 Ga0244680_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 35773 33 100.0 35 ................................. TCTTTTATGCAGCTTTACTGTTGTCAGTAACATTG 35705 33 100.0 35 ................................. TGACAAACGGAGTAATCCCCATCTTGCTATGTTGT 35637 33 100.0 36 ................................. CACATATACGCTAAAAAAGTTGCTAAAAGGGCATAC 35568 33 100.0 35 ................................. AAGAATCTACTAATAGACATCTTGCTAATAAACTG 35500 33 100.0 34 ................................. AGCAAAAGCTTCTTTTGTGGTTCCCTGCCAATCA 35433 33 100.0 36 ................................. ATAAGGCCACCTGTGGCCCTATGATTAAAACCGCTC 35364 33 100.0 34 ................................. ATGTTCCCCCAGCGTCCTTCGTTTATTTTTTTAA 35297 33 100.0 34 ................................. CTGCGTAGATGCACCGCCAACCGTCAGCGCTTTA 35230 33 97.0 0 .............C................... | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 99.7 35 GTCGCTCTCCATGTGGAGAGCGTGAATTGAAGT # Left flank : TTAACTATAGGAATAGGTGCTTTTATATTTAATGTTATTTTTGCAGCTTTTTACAATAAAATTTATATCAAAGAACTAATGAGTAAACGCTTTACTTATGCAGATGAAGCTTCACGCAATTATCTGATTCAATATGAAATCATAAGAGAAGATATACCGACAGACACTACTCCCCTATCAACTGACATCGTGAAAACAAATAATCAAGTTGATAAAATAGAATAAAAGCTAAAAGAATTTACTCATTATAAACTTGTTCAAAATGTCTTAATATAAAACCATTATACTAATTTATGTTGTGCAAATGTTCAATAAAAATTTTTAAACAAGCTTTAACGCAAGTGCGAATGTTAAGTGATCAGTCTTCTTCCTATACTTTCGCACTAAAATATAGATGATTTATGTTAAATAATCGCAAAAAAATTGATATTAATTAATACCCAAAATAGGAAATATCTATATTTATTATTTTTAATTTGCTATACATACTATATGTAGCG # Right flank : ATTAAATCCATTATCAAGGGCTGCTGTGGACATCGCTCTCCATTCGTATAAGGTATAATATTTTTCGCTAAATGATAAAAAAATGTCGTTAAAACTAACAACTTACATATTATTAATTTAGCGACTACAATAATTATTATAAAATGGTATAGTAGATGGAAAATGAGTTAAATGGGAGAGTTTTTTATTATGAAAAACTTCAAGGAGTTCATGGAAAAAAACAAAGAAGTATGGTTAGTAAAATTGCCTTACGAAAAAACAATTAGAAATAAAGCAATATAGAATTGACTGGCTTAAAATCATTGATTTCATCTTCCCTACGAACTACAAGTGCCATGGTAGGAGTCCACTCTGCCTATATTTAAAGCAGTCTGAGAAACGTCAAGCTACTCATCCAGGTCTTTATCCATTTCAGACTCCGTCTTACCATGATAAAAAGACCTCTTATTATTAGCTTTAATAACAGGAGGTCTTATGACTTCGAGATGAAGTTTATTTAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCATGTGGAGAGCGTGAATTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 144-897 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAA01000017.1 Pectinatus cerevisiiphilus strain DSM 20467 Ga0244680_117, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 144 30 100.0 36 .............................. AAGGACACTGCCATCCCATGCAAATTCTCGATCCAT 210 30 100.0 36 .............................. TCCTCCACAACCCGCCACCTTTGAAACAATAAAAAG 276 30 100.0 36 .............................. ATGAGAATAACGGAAGCAATGAGAGAAACAAACAAA 342 30 100.0 36 .............................. AAATTTGCGTGCATTTGAAACACTTGTTATTGATAC 408 30 100.0 36 .............................. CGGCGCGGTAGATAGCTTAAGTTGATGCTTTGGCTG 474 30 100.0 36 .............................. TATGCACTGCCTATTTTCATGTACTTATACTGTTCA 540 30 100.0 35 .............................. AAAAATACCGTATACACCGGACGAAATACAGATAC 605 30 100.0 35 .............................. TTGATTATAACTTTACGACTAAGGACAAGCAGCTT 670 30 100.0 36 .............................. GTCCTGTTCTTCAGTTTGTTCTTTTCTGTCATATTC 736 30 100.0 36 .............................. GCAGGTCCGCCGCTATACCCGACAGTTTTACGGATC 802 30 100.0 36 .............................. ATAGATTAGGCGTTTGATAGCTGCCTGTTTTTCTAA 868 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 100.0 37 ATTTACATTACATTCTGCTCAATTATAAAC # Left flank : CGTCTCCTTTGCGGGTTTTGTTTGGCGACTTAATTTTAGCAAAAGACGAGGCCTATGTCTTTATTTAATTTTGCGAAAAATATTATACCTTATCCTCAATTATAAACTACTAACAAATAATCGCTGTTTATTTTCTCTATTAAA # Right flank : CATATACTAATAATATATCTATGTCGTGGTATAGTGAAGTTGTAACACCTCTGTCTAATAGATTACAATAAATCTATAAAAGAAAGAGAGAGAAAGATGACACATTACGAAGAAGACTTCAAGAAAAAAGTCGTTCGCCTGCATTTAGAAGAGGGAAGGACGTTAAAAAGTTTAGCCGATGAGTATGGTGCATCAAAAGCAGCTATTTCTAAATGGATAAGAACCTATCGCGAAGAATGCCAAATAAACCCAAACAGTAAAAATGAATATGACTATATGAAAGAAAACCTCAAACTCAGAAAACAGCTGGAAGAAACAGAAAAGGAAAATCGCTTCTTAAAAAAAGCCGCGGCATTCTTTGCGAAGGAAATCGAGTAAGAGTTTATCGATTTATTCAACATTATCATTTTGAATTTGGGCTTAGATGGCTGCTGAGAAAATTTGAGCTAAGTCCAAATGCCTACTACAATTTCAAGAAAGATAAAAAAAGTAAATATCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTACATTCTGCTCAATTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 13517-2195 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAA01000017.1 Pectinatus cerevisiiphilus strain DSM 20467 Ga0244680_117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13516 30 100.0 35 .............................. CGTCGTATTATTAACAAGCTCATGTATCTGATCGG 13451 30 100.0 37 .............................. TAATCTTTTACACCATCCGCTGAATTACGATTTTCAT 13384 30 100.0 36 .............................. TGTCGTCAATGCGGTGATGCGCTGCCTTAGCAGACA 13318 30 100.0 36 .............................. AAATAAAATGCGGCAATCTATAGGTCTAACTATTGA 13252 30 100.0 35 .............................. TTTGCTATAATTACATTGCCGTCTTTGTCTGGCGG 13187 30 100.0 36 .............................. ACATTTAACATAGTTAAGGTGATTGTTCCTGTAAAT 13121 30 100.0 37 .............................. TAGTATGCACACTATTATTATGCATTATTCCGACTAG 13054 30 100.0 36 .............................. TAACAATCGGTACTTGTGACTGTAATAATTTTTTTC 12988 30 100.0 37 .............................. GTAAGAATGAAGATCCTATAAAAACCGTTACGACTAA 12921 30 100.0 35 .............................. GTTGCACCAGCTGCAAAAAAAATAGAATCGGTTGT 12856 30 100.0 36 .............................. TTTATTGCCTGTGTGGCTGTTGGTGCGACAATTTTA 12790 30 100.0 39 .............................. CCAAAACTGTGTATGGACAAGCTACCATTAGCGGTTATA 12721 30 100.0 36 .............................. GCTGCCGATAATCGCACACGCATAGTATTGATCCAC 12655 30 100.0 36 .............................. GCAGGAATCGTTACAGTTGAAGTGATGGATACTGCT 12589 30 100.0 36 .............................. AGTAAACTTACTGCACTTAGTGATGAATACAGCAGT 12523 30 100.0 36 .............................. TCCTTTAGCATCACTCATCAATTGCAGTAATCATCT 12457 30 100.0 36 .............................. GCCTTCTGTTAAAAGCATCGAGTTACAAAGAACGTT 12391 30 100.0 37 .............................. AAATGCAGTGTATTTTTATATTTTTTAGCGCAGGTCC 12324 30 100.0 36 .............................. TTTTATCTTTAAATTCAAGATCATTATTATTATCAG 12258 30 100.0 36 .............................. ATAAATTTGTACACAAGATAGAGGATATAGGGTTTA 12192 30 100.0 36 .............................. TGGTTTGTTGCTAAGGATGTTTGTGATGCATTAGAA 12126 30 100.0 36 .............................. GATATAGATGATAATACAATACGCAAAAATTATAGT 12060 30 100.0 37 .............................. GTGGCACCAAAGAAAGAACCAGATATAAAAGACAGCG 11993 30 100.0 36 .............................. GATAAAAACCGTACATATGACTGTGCCTGCTCTTTA 11927 30 100.0 37 .............................. TGCACTAATTGATAGCCGGAAACAATCATGACAATGA 11860 30 100.0 36 .............................. ATGGGGACGCTTGATATTAAGACTATACTAGATTCA 11794 30 100.0 37 .............................. TTTGTATATCACACCTCCCATACCAAATGAAGATATG 11727 30 100.0 36 .............................. ATGGGGACGCTTGATATTAAGACTATACTAGATTCA 11661 30 100.0 37 .............................. TTTGTATATCACACCTCCCATACCAAATGAAGATATG 11594 30 100.0 36 .............................. GGTTGTTCAGCCCATTCAAGCATTTTATCGTATTGC 11528 30 100.0 36 .............................. GCAGCGCAAACATGCGCTCAAGTATGTCCGGAGATA 11462 30 100.0 36 .............................. TGTTTCGCCCGGATGTTTTAAAACCCCCGCAGTCAG 11396 30 100.0 36 .............................. GAAACTAATATAAGTTCTTTTGTCTTTTTTAAATGT 11330 30 100.0 36 .............................. GAAAATTACTGTTTGCTAATCCTTTTATGCTTGCCA 11264 30 100.0 36 .............................. GATGTACTTTTAAATTCAAAAGAATTTAATGCATTG 11198 30 100.0 35 .............................. AAAGCCCCGAAAGCAGGTACCTGCATTAGCGGTGA 11133 30 100.0 36 .............................. ATGGCACGCGCAGTTTTTTTATAAACGGTTTTACAT 11067 30 100.0 36 .............................. GTTGATCTTGCTGCGAAACGAATGTCAACGTTCTGG 11001 30 100.0 36 .............................. TTTCCTGCGGCACGGTGCATAGTCGAATTAACATAT 10935 30 100.0 36 .............................. ATCACGTAGTTGCATCTTTATCACCTGTATTGTTAG 10869 30 100.0 36 .............................. TATGTTTTGCGCCATCTGCGTATGCGGCCCTGCTGC 10803 30 100.0 36 .............................. TCACTGGCGGCACAATAGTTGAACTTGCCAAGCAAG 10737 30 100.0 36 .............................. GGTTAAGTTGCAGGGCCAATCAAAAAATAGGATTGA 10671 30 100.0 36 .............................. TCTTGATATGCCTTCCTGATCTGTTTCTATACTTTG 10605 30 100.0 36 .............................. TTTCATATACATTAGCCTGTATTGCCTCTATCATTG 10539 30 100.0 34 .............................. AAAAGATCGCAATACTTTGTGACTGATTATCCGG 10475 30 100.0 36 .............................. ACCGTTTTACCGGATCTAACAGACCCCTCAAGGATA 10409 30 100.0 37 .............................. ACAATTCGCAGACAGCGAGATGTGGTCTGGCAAGCCT 10342 30 100.0 33 .............................. ATACACACGTGAAGCTTTGGCGGCATCAAAAAA 10279 30 100.0 36 .............................. AGCGAATACCGTCCTGGAGGTGAACTGATTGGATAA 10213 30 100.0 37 .............................. ACAGACTACACAAAAGACTACTCAAAAGAAACAACAA 10146 30 100.0 36 .............................. GAATATAACGCGCAAAAATACTGTCATGACTGTCAA 10080 30 100.0 36 .............................. GGAATTACGTAGATTATCATTTGTCCTCCTTTTTGT 10014 30 100.0 35 .............................. AAGTTTTCAAGGTCATGATAGTCGTATGCGGCTAC 9949 30 100.0 36 .............................. AAGCTTATGAATGGAAATCAGCTCATAACTATACAA 9883 30 100.0 36 .............................. TTGATTTTACGCAGATTTTTGATAACTATTGGGTAA 9817 30 100.0 36 .............................. CTAAAAAAACGTATGCTACAAAAAGCAACGTGTCAA 9751 30 100.0 35 .............................. GATTATACAAGTAATATAGATTTGTCAGCAATATC 9686 30 100.0 37 .............................. CTTATCATTAGATAGGTGGCTATTTTAATAGGTGATA 9619 30 100.0 36 .............................. CTGTTTAATAACCAACAGCGATAAACCTAAAACTTG 9553 30 100.0 36 .............................. AGAGTACGAAAGGAGTGGTAAAATGTCAGTTTCGTC 9487 30 100.0 36 .............................. TTTATCTATCGTGATGGTATTTAAGGAGAAAATCAA 9421 30 100.0 37 .............................. CCAGTTAAATTTGGGCATGAAGAAAGCACCCCATTGG 9354 30 100.0 36 .............................. AAGCAGATACCAGAATATTTAAACTTTAAGTTAATA 9288 30 100.0 36 .............................. TGCGCTTGATATGCCGAAGTTTATGGAGGAGGCACA 9222 30 100.0 36 .............................. ACGATTTTGCTGACTCTTCTTTTGCTTTTGCTTCTT 9156 30 100.0 36 .............................. GTGTCATCTGCTGTATAGCCGGTGACATTTAATATA 9090 30 100.0 35 .............................. TAGTAACCGTTTTAGTAACATTGTCGGCTAGTTCC 9025 30 100.0 36 .............................. TCTGTTGCCCTCTCAGGATTATACCTGTTAGAACTA 8959 30 100.0 36 .............................. GAAAAATAAACACATTTTATACCATCAAGTTTTCCT 8893 30 100.0 36 .............................. GAATACGTTCCATTAAAAATGCAAATAAACCCTGTG 8827 30 100.0 37 .............................. GAAGAAGATAGACGATTTCTGTGTAGATTTTTATTTA 8760 30 100.0 36 .............................. TGATTTTACGGTGTTTATGCTTACTGCATACTTTTT 8694 30 100.0 37 .............................. TTGCACTGAAGGTATATATCAGGTGATGCATTTGATC 8627 30 100.0 36 .............................. GACAATCCAATGCTGCAAAAAGAACTGCCTGTGAGT 8561 30 100.0 36 .............................. TGTTTCAGGGATAGTTGCCTGCTTTCCTATATATGC 8495 30 100.0 37 .............................. AGATAAATTGTTTTTGTTGCCTGTACAGGTATCATTT 8428 30 100.0 36 .............................. TCATCAATTTTGGCCATAACCCCTATTTCTCTATGC 8362 30 100.0 36 .............................. AATATTTGATTATTATTGGACCGCTCCTGCTCTGCG 8296 30 100.0 35 .............................. GGGCGATTATCATTTGTCCCGGTATAAGCTTCATC 8231 30 100.0 36 .............................. TGTTACGAAAATCGTCCTTCATGGGCGGTTTTTATG 8165 30 100.0 36 .............................. TCAGTAAGTGTTCCATCGCCTAATTTCATACTTGTG 8099 30 100.0 35 .............................. TAATAATGCAGCAAGAAAAGCAATAAGGCCGCGGC 8034 30 100.0 36 .............................. ATAGAAAAGCTTGTTGGAAAATTAAAAGGGGCTTAT 7968 30 100.0 36 .............................. TCTGATAAGGTAATCCGCAGTGTTTTGTATATTTTG 7902 30 100.0 36 .............................. TTGTCATTAATAGTGGCAGCAATATTTTTAATCCAG 7836 30 100.0 36 .............................. ATTGGCCTAACTGTTTCTATGTAATCAGCCACGTTT 7770 30 100.0 36 .............................. GTGTATAAAAAAAGGTACTGTGCCAGCAGAAATTTA 7704 30 100.0 36 .............................. TAAGGCTGGTATTTTTATCTGTACTTGTAGATATTT 7638 30 100.0 36 .............................. GTGTATAAAAAAAGGTACTGTGCCAGCAGAAATTTA 7572 30 100.0 36 .............................. TAAGGCTGGTATTTTTATCTGTACTTGTAGATAATT 7506 30 100.0 36 .............................. GCTTTAGAATTTGGCTCTTTTATTTCCTTGGCTGCA 7440 30 100.0 35 .............................. CCTTGCCGCATAACCACGTGTATCAACATGTACAA 7375 30 100.0 36 .............................. TGCAACCCCTTCAATCGGGTTTATAAAGCAAAATTC 7309 30 100.0 36 .............................. CATTTATTTATCCTCCGATTTTTCCCTTTTGTCAGA 7243 30 100.0 36 .............................. TTGGTCAAATTATTTTCTATATGACGATATCATTTT 7177 30 100.0 37 .............................. TAAGCATTGTCATAGATACGGTACCGCCATCGTTCAG 7110 30 100.0 36 .............................. TTTATAAAACGCCCTTTCATTTTTTAAATCCATACC 7044 30 100.0 35 .............................. TTAGATAAGCTTTGGAGAGCATTACCTTGTCCTGC 6979 30 100.0 36 .............................. TTCAATCGATTCTGGTTCTGGTAGTGGATTTATTAA 6913 30 100.0 36 .............................. CTGTAGTAAATGTGGCAAAGATAAGTGGATATACAA 6847 30 100.0 36 .............................. GCTTGGTATTATCAAAAGCAATTCTATGTTTGTCTT 6781 30 100.0 36 .............................. TTCGAGCTGCCATTTAATTGTGCGAACGATTGGTTG 6715 30 100.0 36 .............................. GATTATAACCACACAGAAATAAGATACGGTGGGACA 6649 30 100.0 36 .............................. GCTGGATGAGCGCACTAATAGTATCTTTTGAATCTC 6583 30 100.0 36 .............................. TGCAATTTTATTGAGCTTTGTATCTATCGCCCGTTT 6517 30 100.0 36 .............................. TCCTGTGTAATTGCTTCACAGCAGGGATTCACACCA 6451 30 100.0 36 .............................. TTCGCGGCACAGTGGCAACAGGGTAACGTAATGCTC 6385 30 100.0 35 .............................. ATGAAATTAAAAAGGAGATCGCTTAATATGCAAGC 6320 30 100.0 36 .............................. TTCGCGGCACAGTGGCAACAGGGTAACGTAATGCTC 6254 30 100.0 35 .............................. ATGAAATTAAAAAGGAGATCGCTTAATATGCAAGC 6189 30 100.0 36 .............................. TCATTGACGAGGTTAAAAAAGGCAAAGATGGCATAT 6123 30 100.0 36 .............................. TGGCTATATGATTAACCGTAATCGGCTTGCCCTTTA 6057 30 100.0 36 .............................. TAATACCGATATTAAAAGAACACTATGATCAATCTG 5991 30 100.0 36 .............................. ACATTTGAAAATACTGCAGCGTTTTCAAGTGTACAA 5925 30 100.0 36 .............................. CCGGAAATAAGATCATCAATAGCTGCTCTTATAACA 5859 30 100.0 36 .............................. AATGGAACAGACTGCGCAAATAAATAAGCGTATGAG 5793 30 100.0 36 .............................. TTGGTTGCCAAACATTATCTTTTGTCTGTCCTTCTA 5727 30 100.0 36 .............................. TTTTTGTTGTGCACTGCTGTCCTTTGCGTAGTCGTC 5661 30 100.0 36 .............................. GCAATAGCCGCATTATGCTTTTTATTACTAAAGCTT 5595 30 100.0 36 .............................. GGGGAGAAAGTTGTTATTGAAGCATTTTGTGAGGAG 5529 30 100.0 36 .............................. TTGTACGGTGCACGCCGAACATATTTAATAATATTT 5463 30 100.0 36 .............................. TCATAAAGCAAGGAAACATCTTATAACCAGCCTTTT 5397 30 100.0 36 .............................. ACGAACAAAAATTGTCGGCGCTTATTTTATGCCTGT 5331 30 100.0 37 .............................. ATGGCCAGATAATACAAAATTAAGGTGCTTATCGTCA 5264 30 100.0 36 .............................. TGAGAACCCTTCACTACTTTCTATTCTTATTGTTCT 5198 30 100.0 36 .............................. GCACAATACATTCAAATAGTGCTGAGGAAACATTGC 5132 30 100.0 37 .............................. ACGGCTCTTACGTGGAAACATTCTATGTTTGTAACAG 5065 30 100.0 35 .............................. AAAGCAAAAATATATTTATGATATTGAGCAAAATA 5000 30 100.0 37 .............................. ACGGCTCTTACGTGGAAACATTCTATGTTTGTAACAG 4933 30 100.0 35 .............................. AAAGCAAAAATATATTTATGATATTGAGCAAAATA 4868 30 100.0 37 .............................. ATGAATAAAATTTTATTATCCGATATTTTTTTAGCAG 4801 30 100.0 35 .............................. TTTTTTTGTTAAATTTATATATGTTTTTCTTCTAA 4736 30 100.0 37 .............................. TATTCTTTACGTGCAAAATAATCAAAACAATGAAGAA 4669 30 100.0 36 .............................. ATAATTACTAGCATATACACCGCAGTTAAGACCTAG 4603 30 100.0 35 .............................. TGGACTTTTACTTTTCCGATTGCATTTAGCAATAC 4538 30 100.0 36 .............................. ATACATTTGTATTACATAAAATATATTATCGTCTTT 4472 30 100.0 37 .............................. CTGCACATAGCGAAATCGGCTTCATTGTTGGATGTTC 4405 30 100.0 36 .............................. TCATATCCATATGCGACTCAATTTTATCTTGATTAT 4339 30 100.0 35 .............................. AAAAAATTAAAAAACACGTTAGAACAATTGTCAAA 4274 30 100.0 36 .............................. AATTATCAACGGTTATAAAATTTATTAAATCATAAA 4208 30 100.0 36 .............................. ATTCAAGTACGACAACGGGTACAACAGATTCTTCCA 4142 30 100.0 35 .............................. ATTAATAATCAACGCAAGATAAAGATAAGATATAA 4077 30 100.0 37 .............................. ACGGGGAGCAGAGTAATCCCGCATGACAAGTCAATAC 4010 30 100.0 36 .............................. GTTGGCAAAAATCGCCGAACAATGCGGAGCAGACGG 3944 30 100.0 36 .............................. GAGCTTATTCACGTCGTTACCGAGATTCAGCGCCAT 3878 30 100.0 36 .............................. CTGTTAGTGAGGTTGCTATGCCGCCCGCGGCTTTTG 3812 30 100.0 36 .............................. GCTATAACTTTTGCCGAATTTGAAGATTTAGACAGT 3746 30 100.0 37 .............................. ATGGATTCGCCTTGTTGTGCAGGATGCCGCAACCGAA 3679 30 100.0 36 .............................. GTAGTGCCGATACAGTAAGTGGTGTTATATTTGGGG 3613 30 96.7 37 .G............................ TTTTTCTACCAGCAGCTTTATTATTATTCACAGTCCA 3546 30 100.0 36 .............................. ATTAACCGTTACCGCAAATGCAACAGATACAAGTAT 3480 30 100.0 35 .............................. TGGGTCAAAATTAAAGCCCTTACGTTCCTTGTATT 3415 30 100.0 36 .............................. TCGGTCAATCGGATGGTTATTATATATCAGTTTTTT 3349 30 100.0 36 .............................. TATTTTTTTTATATCTTGCTATGCATGGATGTCCAT 3283 30 100.0 36 .............................. AAGCCCTTGTAGTGCAGTTACACATTCATCTGATAG 3217 30 100.0 36 .............................. AATCGTATAATGTCATTATGAAATCATTTGGATTAG 3151 30 96.7 38 .............................A CAGTGATACGCAATGATAAAGATTAGCCGTTATCATTG 3083 30 100.0 36 .............................. GACGCACTTTGCGGGTACATAGCGTTATATGTGTCC 3017 30 96.7 36 .....G........................ ACAAACAGTACCTGCGGGCTAACAATTTTCGGCTGT 2951 30 96.7 36 .....G........................ GCTTATACATGATTCATTTGGTACAGATTTAGGTAA 2885 30 96.7 37 .....G........................ GTGAAGATATCACGAATCTTGAAAGTAACTCGATCCC 2818 30 100.0 36 .............................. TCTTAATATTATCTTCGTTACTTAATTCCTGTGGTA 2752 30 100.0 36 .............................. TTCGTAAGCTCATTGCTTTCAAGTTGAATATATTTT 2686 30 100.0 36 .............................. CTTATATTGATTTATTAATTTACATAGCAGATCAAC 2620 30 100.0 37 .............................. ATAATACCGACAAAAAATATTATAATTATACCTGTTA 2553 30 100.0 36 .............................. TATCTTCGTTGAAACTGTCAATTATTTTATAGATAA 2487 30 100.0 35 .............................. ATTGGAAAAGGTTTGTAGGAGATGTAGGCAGTTGG 2422 30 100.0 36 .............................. TAGATTCGGCGATTGTTTCTTTAAATGTTGAAAAGT 2356 30 100.0 36 .............................. TGAGTTCACGCAACACATTTGTAACTTCTAAGGGGA 2290 30 100.0 36 .............................. CAAAAGGATTAGCCATTTTTATACACTCCCGTCTAA 2224 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 172 30 99.9 36 GTTTATAATTGAGCAGAATGTAATGTAAAT # Left flank : CATTTAAGATATGGTGGTGAGAATGTGTATCTCGTATTGGTATATGATATAAAACTTGATGTACAAGGAGCTAAAGTATTGCGTAATGTATTTAAAATTTGTAAGAAGTATTTGACACATATACAAAATTCTGTGTTTGAAGGTGAATTATCTGATGGTCAATTATTGAAATTAAAAATAGAAATACAAAAGTATTTACGGCAAGATATAGATTCATGTATTATATTTAAAGGACGTAATAATATATGGATGCAAAAAGAATTTATTACTGACGAAGATGATAAAACTAGTCAATTTTTATAGTTATGTAGATTTTTAAGATATTCTGTCGATCAGCAATTTAGTAAAAATATAATGGGTACGACAGTCAATATAAAAAGCCTAGCTATAAGGATTGAAAAGAATAGATGATATTTTATAGAAACATTTGATAAAAATAATCGGGGATCGACAATTTTATTATTATAAACAGTGTAACCACAAGGCCCTTTTTAAGTCCT # Right flank : TTATCTACAATAGTAATAGTGTAATGGTCAAGCATTTTTGTAACACTTTAGACTACTTTTTTCACTCTTAAATCTCGCTTCAAATGGAGTCAGGTTATGGTTATAGGAATGGGGTCTCATGTGGTTATACCAAATATAAGCAAAGTCACTAACGGCTTGATCCAATTCTTTCTCTGAATGATAATAGTGTAAATTTAATTTTTCATTTTTTAATGTATTATAATATCTTTCCATCGGGGCATTATCATAGGGATAACCAGCTTTACTCATACTTTGTGTAATCTTCATCGACTTGCAGAACTCAACAAATTCTTTCGAAGTAAATTGCGACCCTTGATCACTATGGAGTAGTAATTTATTTTTTATAGTCGGTTGGGAAGCAATTGCTTTTTTTACGGCACGAATGGCAAGGTCACTGGTTATCTCTTTCCCGTTAATACTTGCGACAACACTGCGATCATAAAGATCTATTATGGAGCAATTATAGTACTTGCTGCCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAATTGAGCAGAATGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //