Array 1 16565-22297 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHN01000051.1 Vibrio cholerae strain N2784 NODE_394, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16565 28 100.0 32 ............................ ATGCTGCGTTTATCATCTGAGAGAGAATTTTG 16625 28 100.0 32 ............................ TTCCGGTTTGGATGAGGAACGCCAGTCCATGT 16685 28 100.0 32 ............................ TTGAGGATAATCCTGATATTATCGGCTCTGAG 16745 28 100.0 32 ............................ TACAGGTGAGCTAACCGCATTCTGCGGTCATC 16805 28 100.0 32 ............................ AATGCAAGAGCATGAAAAGGGTGATTATCTTC 16865 28 100.0 32 ............................ TGAAAAAGAACGGATGTATTTATCGCTAAAGC 16925 28 100.0 32 ............................ TTCCGTCTACGTCCTTGAGGCTATGGAATAAG 16985 28 100.0 32 ............................ ATTGAGACGCTATCAGAACCAGATCTTGAACT 17045 28 100.0 32 ............................ AGATGGATGGCTTATTAAAACAAACACTGTGA 17105 28 100.0 32 ............................ TGTTTTAGAAATAACAAAGCTCATTTGTGCAT 17165 28 100.0 32 ............................ ACGCTAACTGCTGCGATGGAATGGGCGCCGCT 17225 28 100.0 32 ............................ GCATCATCATGGGATGAAAGTGAGTTAAGGAA 17285 28 100.0 32 ............................ ATCTGAGAGATAAGGATGAATTTCCACTTTGC 17345 28 100.0 32 ............................ ATAAGGTTAAAAAGCTAGGAGATTACCGTGGA 17405 28 100.0 33 ............................ ATACTCCAGTTGATATTACTAAGCTTTTACCGT 17466 28 100.0 32 ............................ TCACAGGCAGGAAGTTTTCCGACCATGAATTG 17526 28 100.0 33 ............................ CAGCAATGTGAATTTGTGCTTACTCAGTCAATG 17587 28 100.0 32 ............................ AAGCCGCGGAAATCTTTGGGTAAGAAAGCTTA 17647 28 100.0 32 ............................ GCTTACATCGATGTTGATACGCAGTCTGGTGA 17707 28 100.0 32 ............................ CGTTTCATGCTCTTGCATTGGAAGCATTAGAG 17767 28 100.0 32 ............................ TCCAAAGGCTGCATACCTTCGATGTTGGTTAC 17827 28 100.0 32 ............................ CTTCCTGACGAAATACGTTATTACGCTTTTAT 17887 28 100.0 32 ............................ AGGCATTGGCTCTGGTGTCGATTTCGGTGAGC 17947 28 100.0 32 ............................ ATTAAAAGCGCCTGACTCCCGAAGCGCTTGGT 18007 28 100.0 32 ............................ ATGGCGAAGTTGAATCCTTTTTAGAGCTACTT 18067 28 100.0 32 ............................ AGTAGAAGAAGCAGCAAAACTTTGTTTTAAGA 18127 28 100.0 32 ............................ GACTCGCTCTACAAGTGAGCCGACTCTAAATG 18187 28 100.0 32 ............................ AAATCAGAAACTGCTGCTCTATAACTGCCAAT 18247 28 100.0 32 ............................ TACCAGAAAGGAAGCTGAGGACTACTGGGAGA 18307 28 100.0 32 ............................ TCAGCAAAGCAACAGCGGATGAGCTCAAAAAA 18367 28 100.0 32 ............................ TATTCAAAGACCGCAATAAGGCGCACGAAGCT 18427 28 100.0 32 ............................ TTACGGTGGTTAGAAATCGGTTTAAAAAATAT 18487 28 100.0 32 ............................ TTACAGCGAAGTCGCTTTCTGTCGAACTGAAT 18547 28 100.0 32 ............................ TACATCACGGTGTACATCGACGGCCTTGCCGC 18607 28 100.0 32 ............................ ACTAACCACTCTTGCATGGTGCGCATGCGCTC 18667 28 100.0 32 ............................ GCATAGTGCAGGTCTCGCTCTTCCATTTCTTC 18727 28 100.0 32 ............................ CGAAAGTGCGCATCAAAGTGCCAGAGCCAGAA 18787 28 100.0 32 ............................ ACCACTTGATTCAGGATTCGTTCATCTCGCTG 18847 28 100.0 32 ............................ TTGCAGCACAAGGCTTACAGAGGGGTGCTGCT 18907 28 100.0 33 ............................ AGGTGGGGAAGAGGTAAATTAAGTAATTTTTAT 18968 28 100.0 32 ............................ ACGCGGCGTTTTTCCTGCTTGCCGTTATGTTT 19028 28 100.0 32 ............................ AATGGCTAGCGGCTCCCACTCGGTCTTTTCTT 19088 28 100.0 32 ............................ TTTAGAAACCAGTTCGCCATTGAAACCTAGCC 19148 28 100.0 32 ............................ ATAAGAGAAATCACTAACGCGGCCAATGTTAT 19208 28 100.0 33 ............................ GTTACCCAGAAGCTTTCTGTTTTCATTTGTCCT 19269 28 100.0 32 ............................ TTTAGCTGGATATAGCTCTTTAAGCGCAACTC 19329 28 100.0 32 ............................ CAATGCATTCGGAGAGATAGTGAAGAAATCAA 19389 28 100.0 32 ............................ ATACAGATGTTGATCATTGCCCAATCGTCTTT 19449 28 100.0 32 ............................ CGGTCATGAGCGAGGCAACCGCTATTCCAATG 19509 28 100.0 32 ............................ AGCAGAAACCGTGATTGCTTGGCTATCGACTC 19569 28 100.0 32 ............................ AACAATCTGGAGAATATTCCTATGGCTAACAC 19629 28 100.0 32 ............................ GAATAGGTGCCGTGAGGATAGTGGTTCTGAAA 19689 28 100.0 32 ............................ ATGACTAGAGATGTATTCGTTTCTAAAATCTT 19749 28 100.0 32 ............................ ACTGCTCTTTAATCCAAGAATTATCACCATCG 19809 28 100.0 32 ............................ GCTTGTCGGCTCCACGCCGTGTAATTTTTCAA 19869 28 100.0 32 ............................ TTCAGCCTCTTCAATGGCCGTGTATAGACGCA 19929 28 100.0 32 ............................ TGGTCAAAGATGGTAACGCCTATGTAATCAAG 19989 28 100.0 32 ............................ ACGTTACTCAAGTCCGCGCGTCAGTTACTCCT 20049 28 100.0 32 ............................ ATCAATCCACAGCTTCAGGTAGGTAACTTCAA 20109 28 96.4 32 ...........T................ GTAATGGCCGTGCATTGAATAGAATTCAAGTA 20169 28 96.4 32 ...........T................ GTTAAATGGCGCTAAGATTGAGATGCTAAATA 20229 28 96.4 32 ...........T................ CCCCCGTGGGCAGTGAAGCTGTGGTAATGGCG 20289 28 96.4 32 ...........T................ ACTCTCGCCTGACGTATTGGAAACGAAAATAA 20349 28 96.4 32 ...........T................ AGCAACGCAAACAATAACAACGGAGCAGGTCA 20409 28 96.4 32 ...........T................ TTCTTGTAGTAATCAATGGTTAGCGGTGAGCT 20469 28 96.4 32 ...........T................ AGCAGAAAAGGAGGCAATCAGTTCAGCGAAAG 20529 28 96.4 32 ...........T................ GAAGCTTTGAAGCTTATGGGCTGGCAGTCCTC 20589 28 96.4 32 ...........T................ TAGTCGGCAGGGATGCCCCCACTGGCAGAAAT 20649 28 96.4 32 ...........T................ TGTCTCTGGCACTCGCCAACCCACCACGGTGT 20709 28 96.4 32 ...........T................ TGACCCATGGCGATGGCGAGGTGTTCACGCAT 20769 28 96.4 32 ...........T................ CCAAGAACTCACGATTACAGCAATAAACACCA 20829 28 96.4 32 ...........T................ GTTACTAGGGCGCGGCCTACCATAGAATAAAT 20889 28 96.4 32 ...........T................ TTGCGTTTCAAGTCATCCAATTGGAATTGAAC 20949 28 96.4 32 ...........T................ ATTGTAAGCATCGTCAGCCGTAAGCTTTACAA 21009 28 96.4 32 ...........T................ ATTTTTGCGGTGAGCAACACGGTGAAGATTTT 21069 28 96.4 32 ...........T................ AAGAGTGCGCTTAATAAGAGCAAGTCGAGCTC 21129 28 96.4 32 ...........T................ TATAAACGGACAGCAGATTTTTATGCTGAATA 21189 28 96.4 32 ...........T................ AAAATCGATGCGTCCCACCCACACCACCAAAA 21249 28 96.4 32 ...........T................ GTGTTTAACGACCTGACCGGTGCTGTTGTGCC 21309 28 96.4 32 ...........T................ CAATAGAGCTGCATCCTGGTCATGCTACATTT 21369 28 96.4 32 ...........T................ GTCCACCAGCATAACTCGTGAAGTGATGGTTT 21429 28 96.4 33 ...........T................ ATACGGCTAGAGCTTGGCGATATCGAGTGCGAT 21490 28 96.4 32 ...........T................ AGACGGCCATTCCACTGCAGTTTGAAAAGTAC 21550 28 96.4 32 ...........T................ TAGGAGAATGACATGACATTAGGTACAGAATC 21610 28 96.4 32 ...........T................ AAGAGTCGCTTGAACCATCAATTTTGTAATTG 21670 28 96.4 32 ...........T................ CCAATATCGTACCAGAGCAAAGTTCCTTGAAG 21730 28 96.4 32 ...........T................ TTCGAGCGGCTTGCCCGTTTGCGCGTTCATGC 21790 28 96.4 32 ...........T................ TTTCCATCCAGTTGCAAGCTCAAACTGCTTTT 21850 28 96.4 32 ...........T................ AGTATAGCCAGTAGGGAACTCTGAGACTGCAA 21910 28 96.4 32 ...........T................ AATCTCTAACAGCGTTCAGGTAAGTCGGGGCT 21970 28 96.4 32 ...........T................ GTCCGGGGTTCGGTAGTAAGTCGACCCGATGT 22030 28 96.4 32 ...........T................ ATCAAATCTTTTATCATTTGCTAGTACGAACA 22090 28 92.9 32 ...........T.....T.......... AATTGGGGGTAATGGGCTAGTAGGGTCATTGG 22150 28 96.4 32 ...........T................ TTTTTCTCATAAGTGCGGATGTAGCGTTCAGC 22210 28 100.0 32 ............................ GCACTGGTTGCAGTGGAATTGCAGCTCGTGCT 22270 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 96 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTGCGCTCAAGGTAGTCAGTGCGGTTATAGGCACTGCGGACCTGATTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //