Array 1 5581-5974 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXV02000007.1 Salmonella enterica subsp. enterica serovar Kiambu strain HIY0048 NODE_7_length_265142_cov_32.480792, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5581 29 100.0 32 ............................. GTAATTTTACCAAAAATTCTTTCTTTTTCTTC 5642 29 100.0 32 ............................. CCGCCAGTGCCGCCTTTAGAATATCTGTATTA 5703 29 100.0 32 ............................. GACGTATTGATAGTTTAGACAGTAAAGTTGAT 5764 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 5825 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 5886 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 5947 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTATCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAACTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22115-25196 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXV02000007.1 Salmonella enterica subsp. enterica serovar Kiambu strain HIY0048 NODE_7_length_265142_cov_32.480792, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22115 29 100.0 32 ............................. CGCCCCTCATCCACCAGGGCGATGTGATTCCC 22176 29 100.0 32 ............................. TGGTAGCCGACGGGCGTATTGCGGGGTGCATA 22237 29 100.0 32 ............................. GCTGTTTTGACTTTGGATCGTGAGCAGAGCGT 22298 29 100.0 32 ............................. CGCGTTCAGACATTTATCAAAAAACGCGACGC 22359 29 100.0 32 ............................. TTTGCCGCCTCGTAGTAATCCACCAGGCCAGC 22420 29 100.0 32 ............................. TTTTGAGAAATAGCCATCTTTTTTAACTAACT 22481 29 100.0 32 ............................. CGAACGGTGCTGAAATTATTGAAAATGCGGTA 22542 29 100.0 32 ............................. ACAGTTTGTTGAAATCTACGACTTGAGGACTA 22603 29 100.0 32 ............................. GACAAACGCGCGGCTGGAGTCAGGATCAGATA 22664 29 100.0 32 ............................. GACGACAGTTATATGAAAACGCATTGAGCGGT 22725 29 100.0 32 ............................. TTATCGATCGTCCAATCGACCTGCATCTCGGT 22786 29 100.0 32 ............................. CGATTCCAGGCGAACGCGCGTCTCAGCAGGCA 22847 29 100.0 32 ............................. GACACTGGTCTATTATCGCCCACCGGAAGAAT 22908 29 100.0 32 ............................. CCGCACCGCTGGACAGTCGAAGAACTGGCAGA 22969 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 23030 29 100.0 32 ............................. GTATCGATCAACACTAATTCGCCAGTGTTCAG 23091 29 100.0 32 ............................. TGGCGCCGTAGGGGGTTGCAGAATTTTATAAA 23152 29 100.0 32 ............................. GCGAACCCTCATCTGTTACTGGATCAGTGCGT 23213 29 100.0 32 ............................. AATTGCCCTTGCTGCCCGGCTCTTCTACGGTC 23274 29 100.0 32 ............................. CATCCAGACGAAAAAGCGCGTTTCGCGGCGCT 23335 29 100.0 32 ............................. CTGGTTGTTGGCTTTTACATGGATTCTGGTCT 23396 29 100.0 32 ............................. CGGCTAACGAGTGTCGCCCGTGGAAACGTAAC 23457 29 100.0 33 ............................. GATCGCTCCGTTCGCGTCGAACACCCGGAGGGG 23519 29 100.0 32 ............................. GGGGAGAGAGGAAAGGGGGGTTTGGGGGGTAT 23580 29 100.0 32 ............................. ATCGTTGTGGTCCGCGTTGCTGAGGACGAGGA 23641 29 100.0 32 ............................. CGCGACAGCGCGTTTCACTGCATCGTCCATAA 23702 29 100.0 33 ............................. CCAGTCAGCACCAGACCAGAAGCCGTTAACCGC 23764 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 23825 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 23886 29 100.0 32 ............................. TTCGTGCTTAATAGAGGAGGCTGGTTAGATAT 23947 29 100.0 32 ............................. GCGGGACTGTTAGGGATAGACCCCGGAGATTT 24008 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 24069 29 100.0 32 ............................. ACCAGATTAAAGTCGGTCTGGAAATGGTCATG 24130 29 100.0 32 ............................. TTATCTGGACAGGTGACAGCGAACACGAAATC 24191 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 24252 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 24313 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 24374 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 24435 29 96.6 32 .............T............... CCGGGTGCACGCTTTTATTTTTTATGACTCCC 24496 29 96.6 32 .............T............... CAATTTTTAACGATCACTCAGATAAAACAGCA 24557 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 24618 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 24679 29 96.6 32 .............T............... ACCTATATGCGCGCCACGGGTAAGACCTGGGA 24740 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 24801 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 24862 29 96.6 32 .......................T..... CACTTGTAATTCTTCGAGTTTATCGATGAATT 24923 29 100.0 32 ............................. ACGTTTATTCATCAAATGGGGAGATTCTGCTG 24984 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 25045 29 100.0 32 ............................. TTCCGCCATGACCGTTTCGGCCTCCAGCTTTC 25106 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 25167 29 96.6 0 A............................ | A [25193] ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGTGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //