Array 1 2199-2946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDTU010000037.1 Pseudomonas aeruginosa strain 9-25 BGGFLAHE_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2199 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 2259 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 2319 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 2379 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2439 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2499 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2559 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2619 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2679 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2739 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2799 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2859 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2919 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13359-11471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDTU010000037.1 Pseudomonas aeruginosa strain 9-25 BGGFLAHE_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13358 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 13298 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 13238 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 13178 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 13118 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 13058 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 12998 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 12938 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 12878 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 12818 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 12758 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 12698 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 12638 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 12578 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 12518 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 12458 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 12398 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 12338 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 12278 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 12218 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 12158 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 12098 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 12038 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 11978 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 11918 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 11858 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 11798 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 11738 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 11678 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 11618 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 11558 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 11498 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //