Array 1 54312-54567 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPJ01000011.1 Thermus composti strain JCM 19902 sequence11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 54312 35 100.0 40 ................................... CCTTTCCAAGGCCTCCTCCATGGAGAGGTCCACCAAGGAG 54387 35 97.1 41 ............................G...... TTCCAGGAAGCCCGCTTCTACATGCGTCCCCCTCTCCTCCC 54463 35 100.0 35 ................................... CTTGCCCCCGGAGCCGTCGGGGTTGAAGAAGACGG 54533 35 88.6 0 .............................AA.AT. | ========== ====== ====== ====== =================================== ========================================= ================== 4 35 96.4 39 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGA # Left flank : GTCCCATAGCGCCGGGCCAGGGAGAAGAGGGTGTCCCCGGGGGCCACGGTGTGGGTGGGCTGGGCCAGGGCCAGGCCCAGGGCTAAAAGCCAGGGGATTTGGCGCCGCACGGCCCCATTCTACCCCGGCCAAGCCCCCATCCCGGCGGCCAAAGGGCAAGGCTCTTGACGCGACGGATAAGGCAAATCTTGGACTTTAGAAGGTAAAGTGCAGTCCTGAAAGTGGATTGCGTGATAAGTATAGACCGGGTTCATCATCGCAGTAAGGTGCTATAATGGCCTTGTCCGGGAAGCCGAACGGGAATCTTGAAAGCCTATTTTCCCTTGGGGAAGGGCAATATGCGCTTTTGCCTTCTCATCGCTCCTTCTTCCTGTGGCTTCGCGACGAGCTAAACCCCCAAAAAGGGCCGTTATACGGCCTATGCATATTCCAAGTTTCATCTTTCTCACAAACCCCCCCTCCAGGAGCCCTCTCCAAGACGAGGTTCTTGAGGGGGTACC # Right flank : ACATGCGACACCCAGAAGGGGCGTGGCGGCGCCGCGCCGTGGGGGAGCCGGGTTGGGGTTTTCCCACGGGGTAAAGGAGGGGCCCCCGCCCTTTCCCAAGCCGCCTACCCCCTTGGCCCAAAGGCCAAGGGTGTGCTAGAATCCCCCAAGGCGGGGGCCGTTAGCTCAACTGGCAGAGCACCGGTCTCCAAAACCGGGGGTTGGAGGTTCGAGTCCTTCACGGCCCGCCAAGGTGCCCTCCTCCCAAGGAGGGCTTCTTTTTTGGGGTATGCGCCGCTACCAGGTCCTCATCGTAGGGGCGGGCTTCGCGGGAAGCGAGGCCGCCTACCTTCTAGCCCAGAAGGGGGTGCGGGTGGGCCTCCTCACCCAAAGCCTGGACTCGGTGATGATGCCCTTTCTGCCCCCAAAGCCCCCCTTCCCCCCAGGAAGCCTCCTGGAAAAGGCCTACGACCCAGAGGACGAGCGGGTCTGGGCTTTCCACGCCCGGGCCAAGTACCTGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 11471-10402 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPJ01000017.1 Thermus composti strain JCM 19902 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 11470 29 100.0 33 ............................. GGAGAATCGCCCAATGTGGGGGGAGGGCTAGGC 11408 29 100.0 32 ............................. CTCATGCAAGAAATCCTGCGTCTCAGCGGCAT 11347 29 100.0 32 ............................. GTTCCGGCAGGCCCCCTCTAGGGTGCGCATTC 11286 29 100.0 32 ............................. ACGCTTGAGGCTAAGGCAAAGCCTGCTTCGAG 11225 29 100.0 32 ............................. AATGCCTTCCGAAGCGCCGTAGAAACCTACCA 11164 29 96.6 33 ............................A TATGCGCCTCGGCCTCCCGGAGGAAGCACGGCC 11102 29 100.0 32 ............................. TCCGCTCCCGTCCTCACCGCCCTCCACGAGAG 11041 29 100.0 32 ............................. CCAAGGGCCCTGGCATCAATCTTGGGGAGCAG 10980 29 100.0 32 ............................. CCACATAGAACCCCGAGGCCGCCTTCGCTGGG 10919 29 100.0 32 ............................. CGCCTTGCGTAGACGCTCGGCCCGTTCCGTAT 10858 29 100.0 32 ............................. TTCCCCCGCGAGCGCTTCGCTAGCCCGGGGAA 10797 29 100.0 31 ............................. CGCTGGGTCAGATTGCGTCAGGTTCAGGCCC 10737 29 96.6 32 ............................T GGGGTTATCCGGCAGGTCTGCGCCGAGCGGGG 10676 29 100.0 32 ............................. GTTAACCCCGGGCGATTGCCCGGGGCTAGTGG 10615 29 100.0 34 ............................. GACCCCAACTTCGTCCGGGCTACTGACGCGGGCC 10552 29 100.0 32 ............................. CGCCCACTCACGTATGGCGGCATACTCCCCAC 10491 29 100.0 32 ............................. TCTCCGGTTCAAGCGGTTATGCGGTTCAGACC 10430 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ================================== ================== 18 29 99.4 32 GTAGTCCCCACGCATGTGGGGATGGACCG # Left flank : GCGCTTTGGTACTGCTTCGTGGGGGCCTGGTGGTAAAGGAGGCGGCCTGCGGCGAAAAGGGCCAGGGCCTCTATGGGGTGGAGGCTTGGGGGGCGGTCGGGGATCCGGTAAAGGCCCCGCCCCACCCGCTCCACGGGGTAGCCCTGGCGGGAGAGGGCCTCGAGGTCCCGCTCCACGGTGCGGTCGCTTACCCCGTAGAGCCGGGCCTGCTCGCCCACCCGGTAGGGGCGGAGCTTAAGCCGCTCTACCAGGTCCAGAAGGCGGAAAGCCTTCTCCTTTGGCCCCATGGGGAAAGGATACACCGCCTTCCCCCTCCTCCCGGGTTAAAATGACCTTAAGGCCCCACCCTCCTCCGCACCCTCACCGGGCCGGGCCGGGAGAAGCACCCGGCGAGGACCTTGACAACCCAAACCCCACGCACCTCCCGGTTTCTTTGGGTCTTTTCCCTTTAAAGACACATAAAGGGGGGTAAGCGGGGGTTTTTGCCGTCCTGGTCATGT # Right flank : ACCTCTAGAGGACCGCAGGCGCCCTGAAAGGAGGCCGGGGTAAACCCCCGAGGGGCCTTTCCGCTTCCCCCTGCCTTGCTTTAAGCAGGAAACAAAGAAACCCGGTTTCTTGGTATACTGAAATCATGGAGCTGGCCAAACTCAGCCGCAAGGGCCAACTCTCCATCCCCAAGCGCCTCCTTAAGGCCTTGGGCGTGGAGGGGGAGGCCTACTTCCTGGTGGAGCTCGCCCCCGAAGGGGGCCTTCTCCTGCGCCCCGCCGGGGTCTACCCCCTGGAGGTTTACACGGAAGAGCGCCTCCAGGAGCTCCTGGCCGAGGACGCCCTCACCGAAGAGGAGCGCGCCCGCCTTGCCGCCCTCGCCCGTTAGGCTCTTCCTGGATGCCAACATCCTCTTCGCCGCTTGCTGGCAAGAGGGGAGGGCGCGGGCCCTTTTGGAGCTGGCGCCTAGGGCCAAGGTCCTTCTCCTCACCTCCCCCCACGCCCTGGAGGAAGCCCGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21403-22355 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPJ01000017.1 Thermus composti strain JCM 19902 sequence17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 21403 29 100.0 34 ............................. GTTCACTTCGCCCGGGCGGTTCGCCCTGGCGTTC 21466 29 100.0 33 ............................. GCCAGGTGGCGGATCTCCTCCACCGGGTGAGGG 21528 29 100.0 32 ............................. TGGGAGCCGCACCTGCGGGGTCTAAAAGCCGA 21589 29 100.0 31 ............................. GTCTTCGCCGTGAAGGGCGAGGAGGCGAGGC 21649 29 100.0 32 ............................. AGGAGGGGGAGGTGCTAAGCGATGAAGGGGTT 21710 29 100.0 33 ............................. GGGAGGCTGTACGCCCGCCCCTATGGGGAACGG 21772 29 96.6 33 ............................A GCGGCTTCTGGCGGCCTCTGCACGGTGATGTAC 21834 29 100.0 31 ............................. CGGTCCTGGTTGGAGCGGCGGTTGTCCTCTA 21894 29 100.0 34 ............................. CGGTTGTCCTCTAACCGGACCTTTGCTAGCTATC 21957 29 100.0 34 ............................. AAAAGAAGCACGTCCGAATCCGGTGGGTAGTACC 22020 29 100.0 32 ............................. TGGCAAATCTACCCTGGCCCGGCGGATCATCC 22081 29 100.0 32 ............................. ACTACCCTCAGCCGCCAGAGCTGTGCCCCTAC 22142 29 100.0 33 ............................. GACAGAACGCTCCCACTCCACTCCAGCTCCACC 22204 29 100.0 32 ............................. GGTTTTTACCTGAAGTCTAGCCACTTTGCACC 22265 29 100.0 33 ............................. GTCTACCCCCTTAACGCCTATTCCGAGGGGGGC 22327 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.8 33 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : AGACCCCACCCGCCCTGGGGGCTTATGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGACCTCACCCGCTTCCTGGTGGAGGTGGACACCGGGGTCTTCGTGGGCCGGGTCAGCGCCACGGTGCGGGAACTCCTTTGGGAGCGGGCCGTGGAGAAGGCCGGGGGCGGAAGGGTGGCCCTCGCCTACCGGACGAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACTCGGACCGCTTCCTGCGGGACTTTGATGGTATATTGCTGGTGAGCGTTCGGAACGCCGAGGCGGTGCGGAAAGCGGAGAAGCTGGCCAAACAAGTCGCGCGGTTAAAGAAACACTTTGCCGAGGGTTCCGAAGGGGATCTTGAAAGCCAAAACCCGTAATCACTCCCGAAAAGACACATAAAGGGGGGTTAGGGGTCGTTTTTGCCGTCCTGGTCATGT # Right flank : GCCCGAAACCCCCCTAGCGGGGGCCAGGGGCAGGGGCCCGAAGCGGAGGAGGACCTCCGCCTCCTTCAAGGCCTCCACCCGCACCGCCTCGGGGGAGCCTTCGGCCCTGAACCCTTCCCGGCCCTGGGGGACCACCCGGTAGACCCCGGGGACCACCACCCCCTGCCCCGGGCAGGGAAGGTAGAGGCTTCCCGCCTCCCCCAGGAGGTAGGCCCCGAGGCCCCCCTCCCCCTCGCACCGGAGGCGCACGAGGCCCGCCCCCTCCAGGTCCACGGCCAAAAACCCCCCGGGGCGGGCCGGGACCTCCTTGGGAAGGGCCAGGGCCCCTTCCGGGGGCTCCACCCTCAAGACCTCCCCCTCCCGGTCCAGGAAGAGGCGGAACCGCCCCTCCCCATCGGTTTGGGCCAGGCCGTGGCGTCCCACCACCCTCGCCCCCGCCAAGGGCTTCCCCTCGAGGCGCACCAGGCCTTCCACGGGTGCCTGCTCGTACCCCCCGAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //