Array 1 2826109-2825779 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085688.1 Providencia rettgeri strain 06-1619 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2826108 28 100.0 32 ............................ AATTTTTATTGATAAATTGAAATCGGTATCAA 2826048 28 100.0 32 ............................ TTCCGGTACTCAATCCAATTTCTCCAAGTCGT 2825988 28 100.0 32 ............................ GATAATTGTATTGACCTAATTGCAACTGACCC 2825928 28 100.0 32 ............................ TTCCGGTACTCAATCCAATTTCTCCAAGTCGT 2825868 28 100.0 32 ............................ TGTTAAACTGTTAGCCCCTAGCGCATCTGTTG 2825808 28 78.6 0 ......T...GT......A..AG..... | AT [2825787] ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCACCGCCACACAGGCGGCTTAGAAA # Left flank : ATATTAAATCGATTCAGGCAATACCAGAGCAGCATGTTCAAGTCAGTTATATTCGAAAGCATGTAAAAGGGCTGAGCCGAATTGAAGCCGATATGCAGCAAAAAGCACGGTTATGGTCTGAAAAATCAGGGCAACCATTGGAACAGTGTTTGAAAACATTGTCTGAGAGTAAGCCAAAAGCGAACAATCGTTTGCCATTTATTTGGGTTGAAAGTTTACATGCCAGAGATAAGCAAGTCGAAAGCCGGCCTTTTCCTTTGTTTATAGAAAGGATAGAAGCTACACAAAAGCAAATTGGGGTGTTTAGTTGTTATGGTCTTAGTCAAGCAACTAGTGGCTCAGTTTGTTTAGCAACGGTTCCCCATTTTTGACCTTTGCTTTTTGCTCTTTTAAAATTAGTCAGTAAATCAGTAGGTTATAACTACCAGTAAATAAAAGGGTATTTTCCAATAAATACCCTTAATTGATTGTTATCACTTATTTTTATTTTAAAGTGCATC # Right flank : CTGATCTATTTACTGCAGTCGGTATGTAGTACAGACGATACAATGGAATGTGATTTGCACTAAAAAGCAATTTGCATTACAGTGCAAATTATGATGAGGGTATATGTATACTGTAAAATATCATTCTGAGGCTGAAAAAGAAGCAAATGCACTGCCTTTAAAAATCAAGGTGAAATATGACCGCCTCATTAAAAAATTAGATTTATCAGCTAATTATTTAAGAGAACCAGATACTAAATCATTGGGCGATGGATTGTTTGAGATAAGAACTATGGGAAGTGAAATAGCTAGGGGGTTATGGGTTTACCACAAAGATAAAACAATTTTTATGCTCAGGATCTTTATCAAAAAGTCACAAAGAACCCCAAAGTCTGAGTTTTATTTAGCGAGAAAACGTTTATTGGAGCTATTAAACGATGAAAACACATAAAGAGCTACATGATGAATGGATGAAAGATCCAGAATACCAAGCTGCTTATGAAGAAGAAATAAGAACTGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2836321-2834792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085688.1 Providencia rettgeri strain 06-1619 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2836320 28 100.0 32 ............................ TGAAACAGATTCGGTAAGAATTTATTTACAAG 2836260 28 100.0 32 ............................ GTATTTTCCCACGTTACATTGTACTCCCCCGC 2836200 28 100.0 32 ............................ GTCCTTGGGAGGGCGTCACGTTCCATGCCCAG 2836140 28 100.0 32 ............................ GCATGGAAAGACCAGGAGGTTGAGGTGATAAT 2836080 28 100.0 32 ............................ GTTAAACCTAAACTCGCCAGTCCCCGTATTTT 2836020 28 100.0 32 ............................ ACCACCGTATTGGCTTGGGGCTCCTATTGAGC 2835960 28 100.0 32 ............................ GTAAGGACAGGTAAGAGGGTACGTTCTGTCAT 2835900 28 100.0 33 ............................ AATCACAAAGCTCATCATGGTGGGCTTTTTAAT 2835839 28 100.0 32 ............................ GTATCTCTGGAGCAGCCATTGATGCTAAACAA 2835779 28 100.0 32 ............................ TACACCTCAATATCTATCTTTGACCGTATCTC 2835719 28 100.0 32 ............................ ATATGGGGAAGAAACTACCAAGGAGACGATTC 2835659 28 100.0 32 ............................ TTGTAGATATTCGGCATATATTCATTACTTAG 2835599 28 100.0 32 ............................ ACTGAAATTATCAACTGTAATGTTATATGGAT 2835539 28 100.0 32 ............................ TGTAATTTTCGTTGCTGTTGAATAATACACGT 2835479 28 100.0 32 ............................ GTTCCAATTATCAACAAAACCACCTGCTTGAT 2835419 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 2835359 28 100.0 32 ............................ GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGT 2835299 28 100.0 32 ............................ ATATAGACATTACAGATTTCAAGACAGTTGTT 2835239 28 100.0 32 ............................ TAAACCAGAAAGAACTAAAGGCGGTACGTTTT 2835179 28 100.0 32 ............................ GTGGGTGTGGGTTATTGAGTTTAAGCGAGTGT 2835119 28 100.0 32 ............................ ATATAGACATTACAGATTTCAAGACAGTTGTT 2835059 28 100.0 32 ............................ AACTTCAAATCATGCCAGCCGTTTGTATTCCA 2834999 28 100.0 32 ............................ TCGAAAGGGTTTAGTATCACACTGGGCAAGCC 2834939 28 100.0 32 ............................ TAGTTCTGCACGAAGTTGTTCAGTACGTTCGG 2834879 28 100.0 32 ............................ AACCTGAACTCTAATATATGCAGAATATTGCC 2834819 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTGAAGCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTGAATTTTTTAGCTGACACGCGCTCGATTCAAAACGCAGCCCGTAAAAGTGAGTTGTTAGAAACAAATTGGACTGGCACCACCACAGATTATTATAAAGAAAAAGCGATGTTTGAAGCTTCACAAAGTATTTTCAAAGACTTAAATAGCATGTCACTTTTCGGCAGCCGTTAATTATTTAATATTCTTTTTACTCACCGCGCTTTGGAGCCATTCAAGCGCGGTTTTTTGTTTGGGGGGTTTTTAGTCACCACAAAAAGGGGATTTGAGTTTATTATTGTGTCTTTTTTATATTGCATAAATTTGCTTTTGTTTTACCCTTATTTGACCTTTCATTTTTGCTCTTTAAAAATCCGCTGATTTAACAATTAGTTATAGGATTCACTAAAAACAAAGGTATTTTTTGTATTTTAAAGCTAGTCAGTTGTTTTTATTTGTTTTAATCTATTTTTGTTATA # Right flank : GCGCTATCGATTTTATGTATAAAGATAATCAGGTTTATGGTCACAAGGATGGTATAAAAAGAGCATCAGTGAGTATTTTTTTACTGGTCATTCTGTGAAACCCTTCGCAAATTTGGCTTTGGTTGAAAACAAGGACTTGTTTCGTGGGATAAAGCTTATTCTAATAGATTGATTCAAAAATCTTATTATTTAAGGACAGAATCCAACTATTATGGACGATTTTTCACCAAGTGAATTAAAAACTATTTTACATTCGAAACGCGCCAATATGTATTACTTGGAACATTGCCGAGTTATGCAAAAAGACGGCCGTGTTCTTTATTTCACTGAAGCTAAAAACGAAAACCTCTATTTTAATATTCCAATCGCAAATACCACGGTCTTACTTCTGGGCACTGGAACCTCTATTACTCAAGCAGCAATGAGAATGTTATCTCAAGCAGGGGTATTAGTTGGCTTTTGTGGCGGCGGCGGTACACCGCTGTATATGTCTACCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //