Array 1 583249-582330 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR699783.1 Streptococcus sp. Marseille-P644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 583248 29 100.0 46 ............................. TCTTTAGCGTAGCATACTGCTGTATTTTTCAGTAAGGATCTTAAAA 583173 29 100.0 48 ............................. ATTAGGAAACTTAGCTACAGCATCACGACCAGTATAGTATTTATGAGG 583096 29 100.0 41 ............................. AATCTTTCGATTCAAATGATGTTTCCATTTTATTCACCTTA 583026 29 100.0 46 ............................. TTTTTGAATAAGCACTAGCTCGAACAGGAACAGTATTTTTTGGTTT 582951 29 100.0 31 ............................. CGACCATAATCAAATCAAATCAACCTTGTGT Deletion [582892] 582891 29 100.0 36 ............................. ACTTTGTTGCATTCATCCTTTAAGATTACTAAAATC Deletion [582827] 582826 29 100.0 47 ............................. ATAAGGTTACTAATGTAACGTAGCTTTTCAAAAGTTAAGGCTTTCAA 582750 29 100.0 49 ............................. TTTTTAGCGTGGATAAGTGTACTTTCTGAAATATCCATTTCTACCGTTT 582672 29 100.0 47 ............................. TTCGCACAGAAATTGCACTTTTGTGCTTCCTCTCCACGCGAATTTTT 582596 29 100.0 52 ............................. GAAACTACTAGCTAGATACTAACCCTAGAGGATTCAGTTTAGCCGATAAATC 582515 29 96.6 53 ..A.......................... AAATATTACCTCCTCTAAAGAGAAAAATTTGAGTTCGAAGTCATACATAACTT 582433 29 100.0 46 ............................. TGTTTTCAAAGTTTGACATAGATTTTTTACCTCTAATTTTTTTATT 582358 29 86.2 0 .........................CTTG | ========== ====== ====== ====== ============================= ===================================================== ================== 13 29 98.7 45 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTACAGTTTGCATCTGGATTTTGCAGATTATATGAAGCCGGTTATCGTGGATCGAGTGATTTTGAGTTTGATCAATAAACATCAAATCAATGCCACAGATCATTTTGAAGAAAGGGAAGATGGCTCGGTTTATCTGAATCGGGAAGGGAAGTATATCGTCTTGAGAAGTTTTGAGGACAAGCTACAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATTCGGCAGTTTAAGAGAATCTTGCAGCAAGATGGTGACTTGAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATTTTTTGTCTCTTTTTCAAAAGCTGTCAACCAAGCGGTTTATGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAGAATGCTGTT # Right flank : TGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCATGTCTGCTGGGAAGCCTGAGAATTTGTTCGTCTTTTGTTTGGTAGGATTATTTGAAATTTTCGTCATGATTTGCTATACTGGTAGCAGTTAAAGATTGTAGCAGAGCTGTTGCTCGCTGCATGGATAATCAAGAAAAGTACTCTTTAGTGCTTTTTTATTGTTATAGAAAATGGAGGGATTATGCTTTACATTTGGTCTTATTTGAAACGCTACCCCAAATGGTTGGTGCTGGATTTTGTGTCGGCCATCTTTTTTGTAGTGGTCAATCTAGGGCTGCCAACGGTTTTGGCGCGCATGATTGACGAAGGGATTAACCAAGGCGATCAGGAACGCCTATATTTCTGGGGCTTTATCATGCTGCTGGTTATTATCCTTGGGATTTTGGGGCGGATCGTCCTTTCCTATGCTGCTGGAAAATTAACGACCAGCATGGTGCGAGATATGAGGAATGAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 762490-760086 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR699783.1 Streptococcus sp. Marseille-P644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 762489 23 95.7 50 ..A.................... TAGTTGATGGATATCTCCATATACTGTTAATGTTTTGGTTAGAACCCCCT 762416 23 95.7 49 ..A.................... GACAGAGGCCGATATCCTGTCTGAGAGGACGGTCAGGTTAGAACCCCCT 762344 23 95.7 48 ..A.................... TGAGCGTCCAAACTCTGTAGAAATTGCTTGGTTTGTTAGAACCCCCCT 762273 23 100.0 50 ....................... AAATTGTACTTGCACTCCAGCCCAAACCAGCGCTTGATAGCCCCCGAAAA 762200 23 91.3 51 .......A......T........ TGAGCAGGGGTGACGCTTTTAACTCCGCAACAATCTCGTTAGAACCTCCCT 762126 23 95.7 47 ........C.............. TTTCTGAGCTTGTTCAATTTTTGCTACATCTGAGTTAGAACCCCCAT 762055 23 100.0 49 ....................... CCTTGCCTTCAGTACGAATGATTTCGTATGTTTTAGTTAGAACCCCCAA 761982 23 95.7 50 ........C.............. TCAACAGGAACTGCAGTATTACTTAATACCACTTTAAGTTGACTCCCCCT 761909 23 95.7 48 ..A.................... CGATAAACGTAAGTTACAACTGTCTTACCTTCTACGTTAGCTCCCCCC 761838 23 95.7 51 ........C.............. TTACGTTGAATGTGTAAGGGAAGAACGTCAATGTACGGTTAGACTCCCCCT 761763 23 87.0 45 ..A.....C.......T...... TCAGTTACTTTTGTCATAATTATTTTCCTTTCGTTAGAGCTCCCC 761695 23 95.7 49 ........C.............. TGAGCGATTTTATTCGCAACAAACAACAGATTAGCGTTAGCTCCCCCCT 761623 23 100.0 51 ....................... TTAGTACCATTGATTACCCTAGTCTCTCCAAACGTGAGTTAGAACCCACCT 761549 23 100.0 49 ....................... TATTTTAGCTAAAACCATAGGCGAAACACTATATTGTTAGAACCCACCT 761477 23 100.0 50 ....................... TTCAACATCCAAGTCACCTAGAGTTCTTATACTTTCGTTAGAACCCACCT 761404 23 100.0 48 ....................... TTAGTAACAGTCACACCATTACCACTAATAGTAAGGTTAGAACCCCCT 761333 23 100.0 50 ....................... TTATCATCGATATCCGCAGTCATTGTCTTAACGACCGGTTAGCCTCCCCT 761260 23 95.7 49 ..A.................... AAGTTTTCCTGCAATCGAAAACGCTGAAGCCGTTGCGTTAGACCCACCA 761188 23 91.3 51 ........C.......T...... AAATTGACGACGACCATTGACGATGACAGGGCGCTTTGTTAGAACCCCCAT 761114 23 95.7 49 ........C.............. TCAACTGCTCTAGAGTGAGTATCATTGTAGTAAGAGTTAGAACCCTCCA 761042 23 91.3 50 T.............T........ GGATTTGCTGATTTTGCTTGTCGATAGTCTGCATGCTGTTAGATCCCCCA 760969 23 95.7 47 ........C.............. TCATTTTGGTAATCGGTCATTGGTTTACCGATTTTGTTAGCCCCCCA 760899 23 95.7 50 ........C.............. TTATCATCGATATCCGCAGTCATTGTCTTAACGACCGGTTAGACCCCCCT 760826 23 91.3 48 ..A.............T...... GAATAATGACATAGTTTGTCCTTTCTGATTACATGTTAGAACCCCCAT 760755 23 91.3 49 ........C.......T...... ATAAACGCTAGCTCAATCTTAGACTTGATAAAATTCGTTAGACCCCCCT 760683 23 95.7 46 ..............T........ GCGATATTTTTCGCCGAAACTGATGGCGGTGGAGTTAGACCCCCCC 760614 23 91.3 49 ........C.....T........ CCACCAATCTTTTTAAATTTATCTTGAAATTTATTTCGTTAGATCCCCC 760542 23 95.7 50 ........C.............. GGTACGTTAGGGTTCTTAGCGTTCAAGTAGTTTTGGTTAGCTCCCCACCA 760469 23 91.3 47 ........C.....T........ TTTGTATTTTTTACCATTATCTTCCTTCTTTCTGTTAGAACCCTCCA 760399 23 95.7 50 T...................... GACTGGTGCTGCATCATGTCTCTGTCGTAATTAAACGTTAGACCCCCCAC 760325 23 82.6 46 ...T....C.....T.....G.. AATTTCGTTGTTTTGATAAGTTCTAATGCATGTGTTATAACTCCCT 760256 23 95.7 52 G...................... GGATACGTAGCGATACCAGTACGAGGGTCTGAAATTGAGTTAGAACCCCCCA 760181 23 100.0 50 ....................... GAGCTTCTCAATCTTAGTTAATTTTTTATTCATTATGTTAGATCCCCCCT 760108 23 78.3 0 ........C........A..GTG | ========== ====== ====== ====== ======================= ==================================================== ================== 34 23 94.7 49 AATCCTCGAGAGGGGACGGAAAC # Left flank : TGGATCCAGATGAGTATGTGTCGAGCTATACGGGAGGAGGGAAAGATGGTCTTCTTTAATCTTGATGATGATGAAAAAGAGTTTGCCAGAAAGAAAACGAAATTTTGTCTGGTCATTTATGATATCGTGAGCCATAAGCGACGCCTGAAGCTATCAAAGCTTTTAGAAGGCTATGGTGTGAGGGTTCAGCGTTCCTGCTTTGAGCTGGCTCTTGATAAGCTGGACTTTGACTGCCTTGTGAGGGAGCTGAGGGCCTTTTATCAGGCAGAAGAAGGGGACAATATCATTATCTATCTGGGGCACAAGGAAGAAAGGGTTGTTTTTAATCCATATAATGGCGCGGGCGCGGAGTTGATAGACGATATTTTGTTCTTTTAAGTTTTGATTTCTGGGCTAGGCATGGTATAATGAGGTTAGGGTTTAACTAGTTTTTAGGGGACACAAGATGTAGTGGTGGGGCTTCTGCGCTTCTATACAAGATATGGGGGTTAGAACCCCCT # Right flank : GATAGGGGCTTTTTTACTTTCCCTCAGATTCTTGCTTTGCCAAGAAAGAAGGATGTTGGCTGCTTAAGCTTTTTCAAACGCTTCAAAAATATTGACAACGCTTTCAAAACTTGATATAATAAGCTCAGTAAATAGTAATCGTTCTAAAGGGCGCCATGAAATCGGTGAAAGATTCTTTTGCCTTTTTCGGGCGCTTTTGCAGTATAGAGAGGAGACCGTGTGAAGAAAGTAGAGTTACATTTATCAAAAACAAGACTAAAAGACGAAGAATTGATCAGTAAACTTCAGGGCTTTTTGATGGCGCAGATTTCGCCAGACTTTGCGACCTTTCTACATGAGCAGGAGACCAATCCCTACTCGCTGAATCTGAGCTCCAGGCACGATGAGTCGGTGTGGGTTGTCAATTTGCTTTCAGAAGAGGCGGAACAGCAAATGCTAGCTCCCTTATTAAACTTGGAAACCATCAAGCTAGAGAGCTATGCTGAGGAAATCCTTGTCAA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCTCGAGAGGGGACGGAAAC # Alternate repeat : AATCCTCGCGAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //