Array 1 114-2173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPL010000031.1 Leptolyngbya sp. FACHB-261 contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 114 37 100.0 35 ..................................... CTGAAACGGCTGGAACCGGAGCTTAGAGGGAAGGA 186 37 100.0 36 ..................................... ATTGTGAGGGCTAAGAACGGGGCAGGGAACTGGGAA 259 37 100.0 37 ..................................... GGGCCAATTGCCCTTTCGCCCATGTTCTTCTTCATGA 333 37 100.0 35 ..................................... TCGCCCTTCATCCTGGATTACTTCTTCCTCAACTT 405 37 100.0 37 ..................................... AAGGAGGGAGAGAAGTGATGGCACAATGCAACTGGAT 479 37 100.0 35 ..................................... CCGCTGGATGAGTCTTCCAGCCCTGAGTGATCCAG 551 37 100.0 34 ..................................... TCAGCCGCTTTGTTAGCCGCTTTTGAGCGCTTAG 622 37 100.0 36 ..................................... TTTGACATGGGCTTTATCACTAATGAACGGGGCAGA 695 37 100.0 35 ..................................... ACGCTGTCCTCGCTGGCTCCAGAGCTGCTGTTATC 767 37 100.0 36 ..................................... AGGTAGATTTATCGTTGAGATTAAAGGCGACTGCAT 840 37 100.0 34 ..................................... AAAAACCCCGCGTAAACGTCGAGGGCTCAGGCTG 911 37 100.0 35 ..................................... GAATTACCATCCGCTCAGGATAATCAGGCTTAGCC 983 37 100.0 35 ..................................... GGTTGAAGCGGCGGCATTGCACCAGAATGCTGTAG 1055 37 100.0 33 ..................................... GTATTAGCTCGAAAGCACGCCCGGACCCATCAG 1125 37 100.0 34 ..................................... AGCTTCCGCTCGACCCCTTGGGCCGCTATAACGG 1196 37 100.0 36 ..................................... CGTTTGCCCTGCCAGGGAACTTTGAGGTTGAAGCCT 1269 37 100.0 35 ..................................... AACGGGCAATTCAATGGGGAGACCATTGGCATCAA 1341 37 100.0 35 ..................................... AGCTTGGGGATAGGGGTGCTGGCTAAGAAACTGCC 1413 37 100.0 35 ..................................... CACTGCAGCCAACCCTGTATTTATTGAATACCCTT 1485 37 100.0 36 ..................................... CGGAATCAACCCGGAACGGAAGATCTCAACCTCAAT 1558 37 100.0 36 ..................................... TTTAACTGATGAAATTACGGTTGGCAAAAGGAAAGG 1631 37 100.0 35 ..................................... TCCTCTGTGATTGTTCCGAGGGGAACCTGTATGGA 1703 37 100.0 36 ..................................... GTGAAATCAAAGAAGTGAACTGGAAACTCTCATGAT 1776 37 100.0 35 ..................................... ATCGAACCAGTCCCGATTGGCGCAGGTGGATTTGG 1848 37 100.0 36 ..................................... CACTCATGAGGGAGGCTGAAGCCACACACATAGAGT 1921 37 100.0 37 ..................................... CTACGCCTCTACTTCGGCGCATTCCGAACGAGCTGGA 1995 37 100.0 34 ..................................... GCGGCTACGGACAGCCCGGTAGCTGCGCTAACAG 2066 37 91.9 34 .C...G..................A............ CATTGAGACTGCCCTTCTTGCTGCTGGATAGATG 2137 37 86.5 0 .....G.....G.TG..................C... | ========== ====== ====== ====== ===================================== ===================================== ================== 29 37 99.3 35 GTCGCAAAAACAGCAAATCCCTTTGAGGGATTGAAAC # Left flank : GTGGTTTGTGCTGAAGAATTGGATGCGACAGCGATTGGATGAGTTTGAGAACTTTCGAGATTGTGTGGATGCTGCGTTCAAGCAATGTCCTAACGTATGCGCGTAGAGCTATAG # Right flank : CCAAAGGAACTTCTATCAACCTCAAAAAGTCAAATTCAAAAACACCAACGAGTTGAACTAAACTCCCAACTAGGCCAGCTGAAACTCTTGCAGTGCAGGCAAAAAATTGTGATTCTCGTGTCCAGAGCGGCTGAGTTTTAGCAGAGCAAAACGCTGCAACGGCGTGAGTTCAGCCCATTGTTCAGTCGATATTGCCACCCCTGCCACCTGCCCCTTTGCCAGAACACTATCGGGAATCACCTCCGCTTCTAACCAAGCTGGCTGAGGCTCAACCGGCAGATTTGTAGCTGTGCTGCCTGTATGCTTCTCGATCAGCTCACATAGAAATTGCCGATAAGCCAGAATCTCTGACTCACTAGCACAAGGCAGATCCACCAGAGATTCACGCTCCTGTTGATTGAAGCGATTCCACTGATTCAGCTTCAGCTTAATGCCGCAGGTATCCAGCTTGAAACGGACCTGCATGGGAATGCAGCGCAGAGACTCCACAAAATCAGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAAACAGCAAATCCCTTTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 2200-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPL010000026.1 Leptolyngbya sp. FACHB-261 contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2199 37 100.0 34 ..................................... ACCTATCCTCACCCCATCAGCAAAAAACTTGAAC 2128 37 100.0 35 ..................................... AGCGTTAGCTCTGCCCAGCGGCTCCGATCCAAATC 2056 37 100.0 34 ..................................... TGAGAAGTTGATAGGCAGCCTTGCAATAGATCAA 1985 37 100.0 35 ..................................... TTCGTATTCAGGGGATAACCTAACCACACTCGACT 1913 37 100.0 36 ..................................... AGCAGCTGCTTGATTTAGCTGAGGAAACTGACCTCA 1840 37 100.0 36 ..................................... CCATTGGTCCTAGGAGCAGGTGCCGAAGACGTGGTT 1767 37 100.0 37 ..................................... ATAACAAGCGCTATTGACGAACCATTAATTGCCGAGT 1693 37 100.0 34 ..................................... CCAAGGCGATGCTGGATCAGGCATTTTCTTCTCC 1622 37 100.0 34 ..................................... AATCCCCTTACAACTGGCATCCAAGTCCTCAGGC 1551 37 100.0 34 ..................................... CAGCGGCCAACATGCCATCAACATCTCTGACCCG 1480 37 100.0 35 ..................................... TTGATCGGTAACTAGATGAGGGATCCACTGCTTAT 1408 37 100.0 35 ..................................... GGAGCTTAAACCCGTGGGGCTCAACTGGCTCAACT 1336 37 100.0 35 ..................................... TGGTGAATCCGCAGGCCCCAGCTAGGAGAAAAATA 1264 37 100.0 34 ..................................... AACCGACGCGCGTTCCTAATCGCTCGAAAGATTG 1193 37 100.0 34 ..................................... ATCGTTCCTGTGGCGGTCATCGCTGCTGGTGTAG 1122 37 100.0 37 ..................................... TGATAATTCATCGTTGCTACCCTGCTAAATCCTCGAA 1048 37 100.0 36 ..................................... CAAAATCAGCAACCCGGACGGGTCGCAAATCGATGT 975 37 100.0 34 ..................................... TGACCATGATCCGCCTACTTGGTGGTACGAAATC 904 37 100.0 34 ..................................... AGGGCTGCGACGCCGACCCCCACGACAGCGCCAG 833 37 100.0 36 ..................................... AGAACAGATTCTCCAATGGAATTTGAAGCGCTTAAG 760 37 100.0 34 ..................................... GGTTACTGGCTGTCCACTGCTAGAACGTAGGCTG 689 37 100.0 35 ..................................... GCGTTGGTACTTACAAGGCAAGCCACTAGAAGAAA 617 37 100.0 35 ..................................... CGGGATCTACTGATGCGAACGGGTAACGCTACGGC 545 37 100.0 36 ..................................... TATGACAAGGTTAGATCCCTACATCTCTAATCAGCT 472 37 100.0 35 ..................................... GGGGCAGTACTCCGAGCGGCTTTGCTTCTGTCGCT 400 37 100.0 34 ..................................... TTTCTCTAAGCTTCTGGAGGAAGCTAACCTTAAA 329 37 100.0 36 ..................................... TACCCGCACATCGCGGAGCACATTGGCCGCACTGCG 256 37 100.0 36 ..................................... CAAAGGGGAAAATTGGCTAAAGCATGGCGTTGCCGT 183 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 29 37 100.0 35 GTCGCAAAAACAGCAAATCCCTTTGAGGGATTGAAAC # Left flank : CCAAAATTCATAAGGTTCTCAAGTCCTACGGCCAGTGGATGCAATTCAGCCTGTTTGAATGCAATCTCAGCGATGCTGAATATGCCAAACTGCGTGCTCGTCTCGCAAGACTGATCAAACCCGATCAAGACAGTATCCGCTTCTATTTTCTCTGCGCCTGCTGCCAAGGCAAAGTCGAGCGCATCGGCGGCGAAATGCCCCGAGACGAATCGATCTTCCTGGTCTAATCTGCTGCCTAATCACCTAGCTCCGCGCGAATGGGTAGGTGTTGGAGCCAGCCCAGCAGAAATATCAGCTAAAACCGCTACCCTGAGCCGCTTTGTCCCCTTCATAAGCCCAACCCCATCCGCGCAACTCCCGAAACCCTTGCTACATCCCGAATCCAGCCCCCAAGCCACCTTGACCACTCACGACATCTCCCCCCACAAACGCTATACTCTTGCTGATCCGCGCAACCGAACCTCGAAAACTAAATACACCAAGCCCTCCAGCCCCCCGCC # Right flank : CACAGCACTGACGTACTGATTAGAACGCAAACCTTATAGCCCTACGCACGCACGTTAGGACGCTATTCTAGAGAGAGAAGCATTGAGATACACCCATGCCTGCGCCTTACAGTTATGACCTACGCACCAAAGCGATCGAAGCCGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAAACAGCAAATCCCTTTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 16338-20370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPL010000026.1 Leptolyngbya sp. FACHB-261 contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 16338 37 100.0 36 ..................................... GTCTACGGGACCAGCGCCACTAGCATAAGCACCCGC 16411 37 100.0 36 ..................................... GCTACGGGATTGTGGGCTGCATCACAAAAAGCCCCC 16484 37 100.0 34 ..................................... GGGACACCTCTATTTTAGGCCCGGACCTACTGCT 16555 37 100.0 36 ..................................... GCAAAAGAGCCAAGGCGATTGCGCTTAACTTGGCAG 16628 37 100.0 35 ..................................... TTGGCATTGCAATCAGCCCGCAATGAACCGGACGC 16700 37 100.0 35 ..................................... AGGTTGCGGCTGAGAGGTCCGAGGCTTGCGGCTTG 16772 37 100.0 36 ..................................... GTTAGCCATTGCTGGGAGCCGCCAAGCTCCCAACAG 16845 37 100.0 36 ..................................... TGAAAGTGATTTGTTGAATCACGATTACAGGTGGCT 16918 37 100.0 38 ..................................... ATGACACCCATCTCACACTTGCCCTCTTCTACCCGAGA 16993 37 100.0 35 ..................................... GTAAAGGCTCACTCGACTACCTACCTAGCTATCCT 17065 37 100.0 36 ..................................... CTGGCAGCGACACACAACCTAGGTCAGTCGCCTGTG 17138 37 100.0 36 ..................................... AGGCGTCACCTATCGCCCTGATAAATACGACTTGAT 17211 37 100.0 35 ..................................... GGGGCACCGTAGGAGGGCAGACCGCGCCGCTAATG 17283 37 100.0 36 ..................................... AGGCTGACTGCCAGCAACAGTTGACCGGCTCTGATC 17356 37 100.0 33 ..................................... CACACCCCAATCTCTTCTACTTCGAACTGCCAG 17426 37 100.0 34 ..................................... ATCACTAACACAGTAGACCCTATCTGTGTCCCTG 17497 37 100.0 35 ..................................... CTTTAATGATGCTCGCGCTCGGTCCATCAACATTT 17569 37 100.0 36 ..................................... GAGGAAATCAATGCGCGACTCACTGAGGTTGGGCTT 17642 37 100.0 34 ..................................... ATCGCCTGCGGAAGCTGTTTGTTTTGATGGTTCT 17713 37 100.0 35 ..................................... TGAATCAGGCTGAACACACTAGGGTGTGTAATGCG 17785 37 100.0 35 ..................................... GTAGCGCTTGCCAAAGTGTGAGGCCAGCGCTGGCA 17857 37 100.0 36 ..................................... TTGGAGCGGGCGATTGTGAACATCGCTCGCCACTAC 17930 37 100.0 38 ..................................... ATCGTTGGTCGTGCCAACGATCACTGAATGCCTAGGGA 18005 37 100.0 35 ..................................... CATCCATTGATAAGCCCTTTCCGAAACCTCACCCC 18077 37 100.0 34 ..................................... GCTAACTTGTGTGTGGGCATATCGGAGGGATCTG 18148 37 100.0 35 ..................................... GTGATTTGCGCTTTCAAACCTTCGAATCATTTGCT 18220 37 100.0 36 ..................................... TGCTGTTCCTGCGATTCACGCATGATTCGCTTGAGC 18293 37 100.0 36 ..................................... TTTTCTGCATGTGGCGATGCAGAGTTTGAGGAGGAT 18366 37 100.0 34 ..................................... CTGACAGCGGGTGGATTGAACGCAAGCTGATGCG 18437 37 100.0 35 ..................................... ATCTAAAGAACAATTCTCCCACTTGCCTTTGTAGT 18509 37 100.0 37 ..................................... TTCGTAAACTGCACGCCTAGCAGTTACATTGCGTGGA 18583 37 100.0 38 ..................................... GCGTATTTACATCGAGGTCAAACCGGAGTTTCTCAGCC 18658 37 100.0 35 ..................................... TGATAATCGCCTCCGCACCCCTCAAGGACCCCTAG 18730 37 94.6 35 .....G...................G........... GGTATTGAGGCGATCGATAATCTCGGGCCTGTTCT 18802 37 97.3 37 .....G............................... TTTACTGCGGGAAACTATCCGCCTCAGGCTCCAGCGA 18876 37 94.6 34 .....G...................G........... TACAGCCGCTAGAATTGACGACTAACTCAGAAGT 18947 37 94.6 36 A....G............................... AATACCTGCCCACCCGTGAGAGGGGTACACTCCCTT 19020 37 89.2 34 ..T..................CC....A......... TCCAAACCCGAACCGACCGGAACCGGAGAAAATC 19091 37 89.2 33 .....G....G...........A.........C.... TCTCTAAGACTTCAGGGGGCGTCTGGTATGTAC 19161 37 89.2 35 .....G.....G..G.......A.............. GCTAGCCGATGGGTTCTAGGGCGCACTGGGAAGCT 19233 37 89.2 35 A....G.CA............................ CTGAATGTGGCGGGAAACCGCCAGAGTGACTTTAA 19305 37 97.3 35 .....G............................... AGCTCTCTCACGATCCACTGGCCATCAGCACCGGC 19377 37 100.0 39 ..................................... GTCAAGCTCTACCTAGAGTCCGAGGTACATCGACGAGCA 19453 37 91.9 36 A.G..G............................... TTGATTGTTCAATTATGACCTAGATTGCTGTTGGAC 19526 37 91.9 35 A....G................A.............. TCCTCATATGTGAAGCAGGCTGTACCCCTACTGCT 19598 37 94.6 35 A....G............................... CGCGCTGATACACCTAATTGCAAACGCACCCGAGC 19670 37 86.5 36 A....G................CAA............ ATAACTAGCTTAAGTTGGATCAACTAGCGAAGGAAA 19743 37 91.9 36 A....G....C.......................... TTGATTGTCCAATTGTGACCTAGATTGCTGTTGGAC 19816 37 94.6 35 A....G............................... TGCACCTGGTCTTTGTTGGCTAGCTGGCGTAGGGC 19888 37 100.0 34 ..................................... ATTTAAGCCTCCAATAAAAGTGTTAACTGTCCTT 19959 37 100.0 35 ..................................... GGGTCCCTCCAGGCCAACTACACCGATAAGTTGGC 20031 37 94.6 38 .....G....G.......................... GGTGCTGCACTATTACCTGGGCTTTGCTACGCCCGAAC 20106 37 97.3 50 .....G............................... GGGATAACGCAGGCAGAGAAGCCAGAATCCCTGGGAGCTGGCGCGAGCAG 20193 37 86.5 32 .....G.....G..G.......A............C. CAAGCATAAATTCAGGCATACTTTTAATATTT 20262 37 83.8 35 A..A.G.....A..G.......A.............. GTGCTGGCCCACAAGCTTCTGTTCAGCTCACAGAG 20334 37 78.4 0 .....G.CA.........T.....TG......A...G | ========== ====== ====== ====== ===================================== ================================================== ================== 56 37 96.9 36 GTCGCAAAGAACCTAAATCCCTTTGAGGGATTGAAAC # Left flank : TTGACGAGTGGCGGAATCAACACGCCCGGTCGCTTTATGTGGGATGGCGAGTCGGATCACGATGGCTGGCAAATCTATAACGGCACACGCGTGCAAACCTGCACCTGTCCGCGAGAAATTGTAGAACCCGCTGAGGAGGTCAGGTCATAAGTTAGCGCCTTGAATGCCCAGGCCCCCTTGTGTTTCTGGCATAGGGGGGCTGGCTACAATGGCAGGACTTATGAGTTGGATGCACTGAACAAAGCTCACTCAGCGCGGATGGGTAGGTGTTTTAGCAAGGGTTTCTCTGAAAGTGCTTGAAGCTGCCATGCCACAAGGGTTTGCGGCTGGTGTAGTCCAATTGCGATTCGCGCAAGCGGTGAAGGGATTGGCAGGTCTGGGTTTGAGCCTTGCTATCTCTTCTCTCCCTAATGACTTCCAAAGCGGCAAACGCTATACTCACCTTGTCCCGCGCAACTGGACCTTGAAAACCAAATACACCAAGCTCTCCAGGCCCCCTA # Right flank : GAACTCAATCAGCTTTTGCAAGTCTTAAAGAGCTTAGGAAATGCGATCGAATCAAGAGGTAAATAATTTATTTAATGGGCTTGTTTAGGGGGGCTCAATTCAGATCGATTAGAATCCCAACGAACTTGAGAGGTGTGAATGCCTGTAATTTCTAACCCTGAAATACTAGAGATCCTGATGCCTCTACGAGAATACCTTCAGCAGGAATATCAGGAACGCTTTTATCGCGCTATTCTATTTGGTTCACAGGCAAGAGGTGAAGCAACCGCAGCCTCGGATATAGACATACTGATTGTATTGCAAGACCCAGTGGATGCCAGTGAAGAACTTGAGCGTACCAGTCATTATGTTGCAGGGTTGTGTCTGCAACATAATCTCCTGATTTCCCGACTCTTCATGCCGCGCTCACGCTTCGAGGCTGAGAACTCACCGCTGCTGCGAAATATTCGCTCTGATGGAATTGTCCTATGACTCCAGAACAACAAGCCTTGCTCGATAAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAGAACCTAAATCCCTTTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-59] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 538108-535764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPL010000026.1 Leptolyngbya sp. FACHB-261 contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 538107 37 100.0 39 ..................................... ACCAGACATATTGAAGCCTATAAGCTAACTAGCTGAGCC 538031 37 100.0 35 ..................................... CCATCATTTGCAGAGTGGGAATTGGCTGCATTCTG 537959 37 100.0 36 ..................................... TGAACTGATGAAAGTACAAACACAATACAAACACAC 537886 37 100.0 35 ..................................... ACGTTTTCGCTGTAGACGGCGCCAAAACTGAAGTC 537814 37 100.0 34 ..................................... CTCTTCTGGTCTGGCATTGCTGCTCTCGCCACAG 537743 37 94.6 36 A...........................A........ TCGGGGGTAGTGAGCTTCTGGGCAGGCAATCGGATT 537670 37 94.6 35 A...........................A........ TGCGATGCCAGCGCATGGAGGATCGCCTAGTGAGC 537598 37 91.9 34 ......................CAA............ GAGACAATAGCTCAATAGCGTCTGCGTATCGAAT 537527 37 100.0 35 ..................................... GAAGCCCAATTGCAGCAGCTTTTCAGCAAGCGGAA 537455 37 100.0 35 ..................................... AGATGCTCAAGACGCTTACACCGCGCAGAGCAACA TCAA [537438] 537379 37 100.0 37 ..................................... TCTCGCTCTTACCCGTTCGTATATCGCATCGATGCTA 537305 37 100.0 36 ..................................... CGCTCTAACCGGATTAAGAACGTTTGTACTAGTATC 537232 37 100.0 35 ..................................... GCCAGTACCTGGTCTGCTATTTGCTGCTGCTGCTG 537160 37 100.0 34 ..................................... GTTCCCCTACCCGGATGAGCCGCAAGGGGGCTAT 537089 37 100.0 36 ..................................... ACCGGGCTACGCTCTCCAGACGACGCCGCCGCCGCA 537016 37 100.0 36 ..................................... CCCACCCTTACTCAAGCGGCACATCCACTGGCAGCG 536943 37 100.0 36 ..................................... AAGTGTGGTGAGATTATCGCCCGAGTAGCTGAACAG 536870 37 100.0 35 ..................................... TGGGTTTTTGCAGATACCCGGATGGAACACCCTAG 536798 37 100.0 38 ..................................... AAAGCGTCGCCCCTGGGGGCTACCGCATGGATCCAAGC 536723 37 100.0 35 ..................................... TTGTACTACACATTATCCCGTTAATGAGAATGGAC 536651 37 100.0 34 ..................................... CGATAACGTAGTCCGGAGTCGTACAACCTCCAGA 536580 37 100.0 37 ..................................... ATGCTGCCCCAGAGGCCACCCATATCGAGGTTGAAGT 536506 37 100.0 37 ..................................... CACTTTGCGGCGAGTGGTGACCAGCAAATCATAGGTT 536432 37 100.0 39 ..................................... AGAGCATTTAACTGAGGATATCAGCCTTAGCGATTTAGA 536356 37 100.0 37 ..................................... GCCTAGCAATTCTTTGTAGAGCAGGTCAGCGTAGGCA 536282 37 78.4 11 ...........................C.GC.AGCTT ATTTCGGCCAG Deletion [536235] 536234 37 100.0 34 ..................................... ATAACTAATGGTGCCTTTACTGAGGGTGGTAAAT 536163 37 100.0 37 ..................................... CACGTGTTCGGCCTGAGCGCCGACCGCACAGTTCCCA 536089 37 100.0 36 ..................................... GGGTGGGTGGGCTATGGATCACAGAGTCCTCAGATA 536016 37 97.3 35 ...........G......................... ATGCAAACACCCGGTTTTCTCTATGGCAATTGGGC 535944 37 100.0 34 ..................................... TCCATTGCGCGGTCGCCAACCACGATGAAGCCCG 535873 37 97.3 36 A.................................... TTAGGCGGTGGCAATTAGCTTCGTTGCAGCCCGGAC 535800 37 97.3 0 .............................G....... | ========== ====== ====== ====== ===================================== ======================================= ================== 33 37 98.5 35 GTCGCGAAGAACCTAAATCCCTTTGAGGGATTGAAAC # Left flank : TAAGCAGTGGCGGCATCAACACACCCGGTCGCTTTATGTGGGATGGCGAATCGGATCATGAGGGCTGGCAAATCTATAACGGTACGCGAGTGCAAACCTGCACTTGCCCACGAGAAACTGTAGCTTCGGTTGAGGAGGTCAGGTCATAACTTAGCGCCTTGAATGCCCAGACCCCCTTGTGTTTCTGGCCTTGGGGGTCTGGCTACAATTGCGGGACCGGCAAGTCGGAAGGTATCGGTCAAAGGTCACTAAGCGCGAATGGGTAGGTGTTTTGGCAAGAGTTTTGTCCGAAAGTGCCTACAAGTCCCATGCCACAAGGGTTTGCGGCTGGTGTAGCCCAATCGCGATTCGCGCAAGCGGTGAAGGGCTTGGCAGGTCTGGGTTTGAGCCTTGCTATCTCTTCTCTCCCTAATGACTTCCAAAGCCGCAAACGCTATACTCTCCTTGTCCCGCGCCTAGACCTTGAAAACCAAATACACCAAGCCCTCCAGCCGCCCGCA # Right flank : AAGCCGCGATATCACCAGCCTTTATTGCGAGTAGAGGTGAGGTCTAGCTAGTCAACTTAGACCCCTTCCTCTACAGCGAGCAAATCAGTCAAATTTCCTATCTCGGCCTCGGTCCCGGTGATGTACCGTGTCGAAATCGAGGATAGGACCTTTGGGCACGATGCGAGTTGGGTTGATGTTGGTGTGACTTCTGTAGTAGTGCCGCTTGATGTGGTCTAGGTTGCAAGTATCGCGCACCCCGGGTTGCTGATAGAGGTCGCGCAGATAGCCCCAGAGGTTGTTGTAGTCAACAATGCGGCGCAGATTGCACTTGAAATGGCCGTAATAGACCGCATCAAAGCGAAGCAGGGTTGTGAACATACACCAATCAGCCTCAGTGATGCGATTGCCGCAAAGATAGCGTTGTTGGCCCAACACGTCATTCCAATGATCGAGCGCCTCAAACAGTTCGGTCACCGCTTCTTCGTAGGCTTCTTGCGTCGTGGCAAAGCCTGAACGGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGAAGAACCTAAATCCCTTTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [11-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 119650-114381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPL010000036.1 Leptolyngbya sp. FACHB-261 contig36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 119649 35 100.0 37 ................................... GAGCCAGTAGGAGCACCCCATCCCGATCCTCTACCAT 119577 35 100.0 39 ................................... TTGCTCGGATTGTTCGGGACTTGCGAAGTTTTGCAAGAG 119503 35 100.0 34 ................................... ATGGGTGTCGCACCAAGCCCGACTGAGTTGGATT 119434 35 100.0 37 ................................... TTCGCTGCGACCAGTGAACTCGCCGCGACCAGTGAAC 119362 35 100.0 34 ................................... CAGTCGCAGGCGAGGCGCTAAGCATCAAAGACAC 119293 35 100.0 34 ................................... GCACTGAAGAACCAACGGCAGCCGCAGAATGGCA 119224 35 100.0 35 ................................... TGGTGAATCCCTAAGCCGATTTTTACCCCTGTATT 119154 35 100.0 35 ................................... GGAAACAACAAGGACTGCTGAATCGCAATTCAAAC 119084 35 100.0 34 ................................... CCCTCGCAGATAGAGTGCGCAATAAAGAGGCCCC 119015 35 100.0 34 ................................... TTGAGAGTAGCGGGTAAAGTTCAGTTGCCATAAA 118946 35 100.0 35 ................................... GAAGAACAGGCTGCATACAGACGAGCAGGGCATGG 118876 35 100.0 34 ................................... AAATTTGATGGCTTAAGCGCTCTATCGGGCTTAT 118807 35 100.0 35 ................................... CAAATGCACACTGCGGCAGATATAGACTCAATCAG 118737 35 100.0 39 ................................... CAGATGCTATCTCAAGGGCTTAAGCTTTTGAGTGAGGAG 118663 35 100.0 35 ................................... CTGCTCTAGCTTCTAAGTCGCCAGCTATTAGCGAT 118593 35 100.0 37 ................................... CTATAACGGCAATCCTTCCGCCAGCTTAGGGATTATA 118521 35 100.0 35 ................................... TTTCAGTTAACGATTTACTTGGTAGAAATGCAGGC 118451 35 100.0 34 ................................... GATCCAAGCACGGGCGATTCCGTAGGCAGCAGTG 118382 35 100.0 36 ................................... CCCTTTCCGACCTCACCGTCAGAGTGGAATCCCAGA 118311 35 100.0 34 ................................... CTTAAGAGCAGAGTTTGCATGGTTGGATTGCAGG 118242 35 100.0 39 ................................... GACCAATCCCCCTAGGCTGGGGTGAAATTACTTGCCGAG 118168 35 100.0 36 ................................... ATCGGGAAGCCGTTGCCCACTGAAGCAGTTGTAGGA 118097 35 100.0 35 ................................... TCGGACATTTTTCACCCCAACGTTAAGCACGAGTG 118027 35 100.0 38 ................................... GGAAGCTAAACACGGTCTGTAAGTCAGACATTCAGGGG 117954 35 100.0 37 ................................... GGCGGATAAAGAGGACCATAGGCATCTGTCAATACCG 117882 35 100.0 37 ................................... TCATCATAGGTTTAAGCTCGCAAAGCTACGCCCCCCA 117810 35 100.0 36 ................................... TCGAAGTGGTCTTCGTTGACCTCGTTGCAGCCCTGA 117739 35 100.0 36 ................................... CAGACCATGATCTTTGGGAAGACATCCTCTCTGAGT 117668 35 100.0 41 ................................... AGCTTCAGAATTCTCAACGAAACACCGGAAAGCTATAACGA 117592 35 100.0 35 ................................... ATCCAGAATTTGAGGATGATGAACCGCCAGACCTG 117522 35 100.0 35 ................................... TAGATCTCAGCGTTCTCTGTCTCTCGACCTCGTAA 117452 35 100.0 34 ................................... ATACCGGGATTGTAATCACGGGGATTGATAAATA 117383 35 100.0 35 ................................... GAGAATGTAGGCGGCGGACAAGTTTATAGAGAATT 117313 35 100.0 34 ................................... AGGAGCCATAAAACTCCAAACCTAAGTCAAACTC 117244 35 100.0 36 ................................... TTGGCGGCATTACCGGGAACCGCGGCTGTAGTGTGT 117173 35 100.0 35 ................................... TACCTGCCATTATTTGGAGGCAACTGACGCTGCTT 117103 35 100.0 35 ................................... ACCAGGGACCGATACAGGCGATTGAGTTTCAAGCA 117033 35 100.0 35 ................................... TCACATCATATTCCAGCCTGAAGCCACCGTTATAG 116963 35 100.0 35 ................................... CACAAGATAGTGGCGGTTTAATGCAATTACCACAG 116893 35 97.1 37 ...G............................... ATCGTCAACTGCATGATTGGCTGATGCACCTTAAAAA 116821 35 100.0 36 ................................... TTCACTGTGCCTGTGTAGATCTGAAAGCGCAAGCCG 116750 35 100.0 34 ................................... ATCAGTGTGGAAGATAGGAAGCTTCCTATTAATT 116681 35 100.0 38 ................................... CAGAGAAACTAGGGAAATGGGGTGAAGAAAACTCGCAG 116608 35 100.0 36 ................................... GCGAGACTCAGTTATTAGTACAAGCGGATATCCTGC 116537 35 100.0 35 ................................... GTCATCGTCTCTGGTGGCCCATTGAAGTAAGGAGC 116467 35 100.0 36 ................................... CCTACTACGACGAAATGCTTCCCGGCAACATGCTGA 116396 35 100.0 35 ................................... CGCTGGAATCATGGTCCTCAACGATGGGGTGATCA 116326 35 100.0 35 ................................... GCATCTCTGCCAGGAACGCCGAACAGATAGCGAGG 116256 35 100.0 39 ................................... ATAAGTCGCTCAGAGACAAGCTTGCCTAATGCCCGATAG 116182 35 100.0 35 ................................... CTCATAAAGCCTTTGCCGACAAAATCAACGCAGAG 116112 35 100.0 35 ................................... TCTCCCCATTTGCTCAGTAGCTCCATCTTCCATCC 116042 35 100.0 35 ................................... CTTAAACCCCGCTCACCCCTCCGCAAACTGCTCAA 115972 35 100.0 36 ................................... CAATTTCACCAATCATGACCAACCACCTCCATACAT 115901 35 100.0 37 ................................... AACCATTTTCGAGAGCCAGCCATGCAGATTCCTCCTG 115829 35 100.0 35 ................................... AAATCAATGCTGCCAGAAGCGACCGCAAAAGCACC 115759 35 100.0 35 ................................... ATCGACTCACTGACCAGCGCTAACCGGCACGGCAC 115689 35 100.0 35 ................................... CTTGAACTCCGCAAACTAGGATGCAGAATTGAGCG 115619 35 97.1 35 ...................A............... CAGCACGGGCAGACTGACGGGGTATGGTGCCCTAT 115549 35 94.3 35 .A.................A............... CAGCACGGGCAGACTGACGGGGTATGGTGCCCTAT 115479 35 97.1 37 .A................................. GTCAGCACAAAGATTGCTTCGGGCTCAGTCAGAACCG 115407 35 94.3 39 ......G..............C............. ACCCAAGGCGCGTAAAAGGCGATGTGGCCGAATTGATCA 115333 35 88.6 35 .G....G....C.........C............. ATTTGACTAGTGGTTTTGCCGCCATCAACCAATTC 115263 35 91.4 36 ......G........C.....C............. TACTGGTCAAACGTCGGGAATTGCCTCTCCTTCCTC 115192 35 94.3 36 ......G..............C............. GAGACGGAAATGCAACCTCAAGACTGGATTCAGCAA 115121 35 94.3 35 ......G..............C............. GTCACAGAAAGGCTCAATCATGCCTTCCTCTGTGG 115051 35 91.4 36 ......G........C.....C............. ACCACTAAGCCCCTGATCAAGTTTGTGTTGCCCCGT 114980 35 97.1 34 ......G............................ GGAATAACGCCATTCACCAGAGCCTGAGCCCGTT 114911 35 97.1 37 ......G............................ CGCCACTGAGTAACATCTGCGATCAAGCTCACACTTT 114839 35 97.1 36 .....................C............. ATCGCTTCAGCGAAAAGTATTTAGTCGCTATGGGTG 114768 35 97.1 35 .....................C............. TCCAGCAGCCCGCACAGCAGCAACAGTGACAGGGA 114698 35 100.0 36 ................................... CATCGGCGGCAAAGAAATGGCGGCTAGAGGCGATTT 114627 35 100.0 35 ................................... ACCCAGTAGGTTGCCGAGCCCGCAAAGGCCAAAGT 114557 35 100.0 37 ................................... TTTAAAGGGATTCGGGGAAGATAGTCCGTGTTACGAA 114485 35 100.0 35 ................................... TTCTCCTTTAATGCGCCTCCACCCAAGGCTGAGCC 114415 35 97.1 0 ...T............................... | ========== ====== ====== ====== =================================== ========================================= ================== 75 35 99.0 36 GTGAAAAACCTTTGATGCCGATAGGCGTTGAGCAC # Left flank : CGAGCCAAAGCGCTGGCGGAAGGCTTACAAACTGCTTCAGGGCTACGGTGAGAGTTTGCAATTGTCAATCTTCCGCTGCTGGCTGAGCCAGCGGGACCGCGAGAAATTGCGCTGGGAGTTGGAGAAGGTCCTGGCAGCAGAAGATAGCTTGCTACTTGCTGGCCTGTGCAATCGCTGTGTCGAGAGGGTTCAGGTGTGCAATCACCCGGAAGCTTGGCCTGCCAGTAGTGAGGGATATCGGATTGTCTGATACAAGGATCTGTGGCTGTAAGGTCTGCCTCTGGTGCGTTTCCTGCTTCGAATCCAATCTAGGCCAGGCTTCGGCGGGCTTCTCTAGCTTCTGCAGATGCTTGCAACTACAGAAGCTCAGTCCGTACATGGCTTTCAGGCTCCGTCCTAAGGCAGCAACGTCTCAGCTTTGCTGTGATATTGCTGCCTTAGGACGGAGCCTTGAGAATTCGCTCCCCACCCCTTACAGAGCAAAGCTTTTAGCTCCCGCA # Right flank : TTGATCCGGATCCGCTTACCAACACTTCTCTATCGTGAACAACCTTTGGTTCGATAGAAGTTTGCAGTGCCCTTTTGAAGACAGAAGCTGCGGTATTTTGCTCAATCTTCAGGGGTGGCTCAAGCGGAAATCGTACAAGTTAGGCAACGAGTTGAGACCCAAGCACAATTACAAATTACTCAAGTTGCTGGGTTAGGAAGAATGGGACAGCACCGTTCCTCAGATGCCCAGCATAGAGCGGAGGCTTGGCTTGCTTATGAGCGGGAGGTGGACCCGAACGCGGGCGTTATCCAATGGGTAGCGCAGGCCAAGCCAGGTGATTTAACTCATTTTGGAACAGGGCGAGACAGCAATGATCTTCAGACCTGTCCTACGCTCTTGATTCTGGGTTGTCCTTGCAAGTGACTCTCAGCGCTCAAAGCGGAGTTCACAGTTCTCTACGGGCGTGCTCCAACTGAAGGTGAAATCTATACAGAATACGAGGTACTGTTCGAGGGTGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAAAAACCTTTGATGCCGATAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //