Array 1 38-1588 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYF01000023.1 Campylobacter fetus strain wqj525 contig00023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38 30 100.0 36 .............................. TTTCTACGTTCCTGGATTCTTCTATTATTAAATTCC 104 30 100.0 37 .............................. TCTGTTGTGGCAAATTCAAACAAAGCCTTTCCGCTTC 171 30 100.0 37 .............................. ATCTTATAGCAACAAACGCGATTGATGAGGCGTATAA 238 30 100.0 36 .............................. AAAGCAAATAAGCACTCTAATTATGCTTAAATGGCA 304 30 100.0 36 .............................. AAAGCAAATAAGCACTCTAATTATGCTTAAATGGCA 370 30 100.0 36 .............................. CAAAAAGAGACTATCTCTGCTGATGTTTTTAAGATA 436 30 100.0 35 .............................. CTCATACCCCTATCTTTGTACAGTGGATTTGAAAA 501 30 100.0 36 .............................. AAAGCAAATAAGCACTCTAATTATGCTTAAATGGCA 567 30 100.0 36 .............................. ACGCCCTTTGAAGAGCGTAGCCTTTTTCATCAAATT 633 30 100.0 36 .............................. AATGCCAGCTTTTATGGACGCAAAAAATCTTCAAAG 699 30 100.0 37 .............................. AGTTTATCGATTTTACTATACTTATAGCTTTGTTCGG 766 30 100.0 37 .............................. ATATAAACTCATAAGCATAACACGTTAATAGGTTATC 833 30 100.0 36 .............................. GTTTTAAATTTCTTTTTAACACTCTCTTCAAAAAGT 899 30 100.0 36 .............................. TAAGCCATAACCTTTTTATCAAATTCGCTTGGCGCT 965 30 100.0 37 .............................. GAGATAACAGCAGGTTTTAAAGAAAAAGTACTAAAAA 1032 30 100.0 36 .............................. CTATCTAACTGCTCTTTAAGCTTTTGTTTTTCAAGT 1098 30 100.0 36 .............................. TCTAGAATCTCTACATTTATACTTTGTGTATCTTCG 1164 30 100.0 36 .............................. AATAGAAGCCTTAGGTGATTTGATATGTGAGGCTAT 1230 30 96.7 35 .....T........................ ATACTTTAGTAAAAAACTAAGTAGAAAAGATAGTG 1295 30 100.0 35 .............................. AGTTTGAGGGCTTAGTTCCATTTGAGTTTTAGGAG 1360 30 100.0 36 .............................. AAAAACTCCAGCGCTACCTCGCGAAATATAAATTTA 1426 30 96.7 36 ...............G.............. AATTCCGCGCAATATTTTCCAGAATGGTTAAGCCAT 1492 30 100.0 37 .............................. TGGTGTGTCCAGCTGGTCGGTCTCCTGCTGGTTGCCA 1559 30 96.7 0 ......................A....... | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.6 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : ACATAGTAAAAAGAACCGAGCTTTAAAAAACGCAATCG # Right flank : CTTGTCGAACGCCTATTCTACCACTTCTAAATAACCAACTTGAAAATACACTTTATAAAAAAGCTGAAATTTATTAAACTATTTTTCGAATGGTAAATTAAAATAGTAAAAAATATAATTTTGAAAACTTAGGCAAGAGGTTATTTATATAAGATATATATAAGTATATATAGTATATAATAAAATAAAAAGGATAAACTATGAAAAGCTACTGCTTGAAGTTAGATGATGACACATTTGCACAATTAAATCAAATCGTAAAAAATAGCAAAACAACTATGGCTGAATTTATCAGAAATGCACTAGATCAAAAATTAAAAGAAACCAAAGGTTCGCTATCATACAGGCTAACTACGCTTAGTTACTGCGATAAAAAAGAGAGCGACGAGATACTAGATAGTCTAAAACATCTAAACGACGACGAGTTAAAGATAGCCAAAAAAGAAACCATAAACTTATGAAGCTAGAAATCAACTATACCAAAGTTTCTATAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 37-1908 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYF01000018.1 Campylobacter fetus strain wqj525 contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37 30 100.0 35 .............................. CGCGCAAACAACAGACCTTTAACTGCGTATTTAGA 102 30 100.0 35 .............................. TTATTTGAAACATATATTTTAAAAGTTTAAAATAA 167 30 100.0 35 .............................. TCTGTTACAAAGCCTACTTGCTTTAAGCCCTGGCT 232 30 100.0 35 .............................. AAGTAACTAGTATTTGCACTTAGCACGCCTTTAAA 297 30 100.0 36 .............................. TTAGGAACGCTATTTTTTTCCAGTTCTTTACTTTGT 363 30 100.0 36 .............................. TTTTATAAATTTCAGTTGCGAGGTCTAAATTTATCT 429 30 100.0 36 .............................. ATAAACTATCGTTTTAACCTTAAAGTGTCACGCTCT 495 30 96.7 36 ...............G.............. AAAGAATAATCTTCTAAAATAACATCGGCATTATCT 561 30 100.0 35 .............................. GTGAGGCGTTGGGGGCGTCCATATAATAATTAAAT 626 30 100.0 37 .............................. TCGATTTTTGACGAATGTGATCCAGACGGAGATGCGG 693 30 100.0 36 .............................. CGCAAATAATCGCTCATTTTCATCCTTTTCAAATTG 759 30 100.0 36 .............................. AAGAAATGCTCAAATAACTCGTACATTTCTTTTAAA 825 30 100.0 34 .............................. TTAGAAATAATTTGTATTTTCCCGTGGCTATTAT 889 30 100.0 36 .............................. CTTATATTTATGGTCCTTTTTAGGGTGTTACTTCCA 955 30 100.0 34 .............................. TTAGAAATAATTTGTATTTTCCCGTGGCTATTAT 1019 30 100.0 36 .............................. CTTATATTTATGGTCCTTTTTAGGGTGTTACTTCCA 1085 30 100.0 36 .............................. GGTATAGACCTAATATTTTAGTAGCAAACTCTAATA 1151 30 100.0 37 .............................. TTGTTAATTAGAAGTAGAATTTCATCGGTATGCTTCT 1218 30 100.0 37 .............................. ACGATTATGGCGTCTCTGATGTATCTTCTTATAGGAT 1285 30 96.7 36 ...............G.............. CTAGGGGAAAGGGATTTACTAAGCTCCTCGTCAAAT 1351 30 96.7 36 ...............G.............. ATCACATTTTTAGATATATCAGAACTAGAAGTAATG 1417 30 100.0 36 .............................. TAGGTTTCCCTCCTCGTTACCCTTGTTGTACTCCTG 1483 30 100.0 36 .............................. AATTTAGATTTTAATCCATAAGACGCTAGTAAATCT 1549 30 96.7 36 .............................T AACGAAAAAGAAGGAAGTTGGGCTGTGGGCATAAAA 1615 30 96.7 37 ...............G.............. CTCAGAAAAATTCTGTTGCTTCTAATTCTCAAAAGCT 1682 30 96.7 36 ...............G.............. AACGAAAAAGAAGGAAGTTGGGCTGTGGGCATAAAA 1748 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 1813 30 100.0 36 .............................. CCCAAAGTTGCTACCAAAAATCCATAACCGATAGTA 1879 30 73.3 0 ..........A....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 29 30 98.4 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TGATACATTTAGAATTATAAGATCGTCTGATCCTATG # Right flank : TCACATAGAGCTCCAAAGCAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAAAATAACAAATATATAAACGCTTTCAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 83-2014 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLYF01000034.1 Campylobacter fetus strain wqj525 contig00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 83 30 100.0 35 .............................. TTTGGTAACTCCAAACGCTTCTAACGCCGTTATAT 148 30 100.0 36 .............................. ATTTTGTGCAAAAAGGTTAAATAAGTTGCTAAAATC 214 30 100.0 36 .............................. CAGGGTGATTATATAGCAAATATGAGAAACAATGAA 280 30 100.0 35 .............................. GAATGTAGCAAGTAAAACAGGAGTTTTTAGTGGAA 345 30 100.0 34 .............................. ACGGACAATAAAACCTATAATATCAGCGTTGCGC 409 30 100.0 36 .............................. TCCCCGTTGTCGATTTCTGGGGTCATGCTCTCTCCG 475 30 100.0 36 .............................. CCGGTTATTGCAAGGCTTAGAGGCACATCTTTTGCC 541 30 100.0 36 .............................. TCTAAAGGCATGATAACTCTAACTAATATATCTTTT 607 30 100.0 36 .............................. GCTATAGACTACTGTATAAAGGAGTTCCCTACTTCT 673 30 100.0 36 .............................. TAGTCCAGGCAACCTTTTTTATAATACCCTGCGTAG 739 30 100.0 36 .............................. AGTCGCTTTCTGTCATTTCCATTAATTTCTTTTCCA 805 30 100.0 36 .............................. ATCAGCACGTGTTTAACTATTTGAGTGAGTGGATAA 871 30 100.0 36 .............................. TTTACAAACTGCAGATTATCATTTAATCTTATATTT 937 30 100.0 35 .............................. AGCTGATCGTATTTGAGTTGAATATTCTCGATGTT 1002 30 100.0 35 .............................. GTGTTAAATATATCTTCTAAGGATGTATCACTTCC 1067 30 100.0 35 .............................. TTTTGCAAAGGCTTTAGATCCACACTCACGCCACT 1132 30 100.0 36 .............................. CCTAATAGCCCTGTAAATAACCCTGCTGCGCTACTG 1198 30 100.0 36 .............................. ATAGCACACTTTATTATTTTTTTATGTGTGCTATTC 1264 30 100.0 36 .............................. AAACAATTTACTAGTCCCAAATTGGAGATACCGCAA 1330 30 100.0 35 .............................. ACTACAGGTACATTAGATATTTTTAAATCTAATGT 1395 30 100.0 36 .............................. TTTTATAAATTTCAGCTGCGAGGTCTAAATTTATCT 1461 30 100.0 36 .............................. ATCAGCACGTGTTTAACTATTTGAGTGAGTGGATAA 1527 30 100.0 35 .............................. CCCCTACGCCCTTGCGATGCCAAATATCAGCCTAC 1592 30 100.0 33 .............................. ATCACATTTTAGATATATCAGAACTAGCAGTAA 1655 30 100.0 36 .............................. AAGAAAATGAAGATTTTAAAATAGAGATTCTAGAGA 1721 30 100.0 36 .............................. TAGGTAATCTTGAGCAACAACAAAGCGAGAAACTAG 1787 30 100.0 36 .............................. AGGAGATAAAATGAGTAAGTTAAAAGAGCTAGGAGT 1853 30 100.0 36 .............................. ACTTAACTCCGCAAAACAACGAAATAGCCTATAAAA 1919 30 100.0 36 .............................. CAGGAACGCTTACAGTGGTAACAGAGCTTAGCGGCT 1985 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 30 30 100.0 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CAATAGTTTTTTAAATTTATTTCTTATTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTATGG # Right flank : CAATTTCTTTTTTAATGCAAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATATATGATAAAAAAGAGGTGATAAAATGGAAAATCGCAAATTTACTATAGAATTTTATGAAATAGAGTGGTTTATAGATCTTCAATCTCACATAGATAATGGCGATAGCCAATTAGATATAATTCGACCTATTACAAAGATAAGAGATAAAAGAATAGCTCGTATATTTGATATCTTTGCCCCGGAAACTGAATGCATAGATAAGGCAAAAGAGCATAAAGAATTCTATGAGATCTGCGATTTTGAAGTACCGCAAACTAATCATAAATTCACAGGTACTTTTATAGACGCTTTAGAATATATAAAAGATACCTTTAATCAAGTTTCAAAGACTGTTTAACATCATTTAAAACCTTGCTAAAAAGCGTTTTGGTTTTTGCATTACAGGAGAGAGTGCTAATAAGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //