Array 1 1956798-1956253 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386489.1 Methylocaldum szegediense O-12 strain O12 MetszDRAFT_MSL.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1956797 37 78.4 38 .GG..GTGACA.......................... CAGGGCCCGAATACCTGATTGCAATCGCCAAGGCGGAG 1956721 37 100.0 34 ..................................... CCGACTCACCCATAAAGAGATTGTCGCCGGGTCA 1956650 37 100.0 36 ..................................... CATCCTCCACCATGCGCGCGTAATCGACGCCCGAGG 1956577 37 100.0 35 ..................................... TAGGTCCTCGATCTGCGAGTACGCGGCCAACAGTT 1956505 37 100.0 35 ..................................... TAACTCTCTAGCCCGCCGCTTGGCGGCGAGGATGG 1956433 37 100.0 36 ..................................... CCTTTTGAGCGAAGAGATCTACGAAATAGCAGAACG 1956360 37 100.0 34 ..................................... TGCCTCGACGTTTGCGGGCCGAATGGATACGCCC 1956289 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 97.3 36 GTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAAC # Left flank : CGCGTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAACTGGTTCGGGGGCGTGGTGATGGATGCCGGCGCCGCGTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAACATCTCGGACAACCCTTTGTCGACGCCGTTGAGCCGCGTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAACCAGCACCGAGCGCTCTAGCGCCAGGCGCAATTCGGTAACTCCCGGCTTAATTGTCAAGTCCCGCACGATTGTAAACCCTCTTTCGAAAAAGATGAGGATGGGACAGTTGCCAGTTTTTGAGAGTCTGAATTGGGGTGAGATGGCCTAAGGCCTTTTGGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGCTCCGGGCTTCAAACAGAGCATAACTCCTTCTCGGTAAATAATCATAC # Right flank : ATGTACAGGAGTCGGCTCCGGAGGCCAACGCTCTATCCAACTGAGCTACGGGCGCATGCCGCGCAATCAATAACTTACCGCGCATGTCCAAATTAGGCCAACGCCCTGTGTCACACTTCTGTCACAGAGGCGATTATGGCGACTATCCGAAAACGGGGGTCAAGTTGGCAGGTTCAGGTTAGAAAAAAGGGGCAGATGCTCTCCAAAACCTTCGAGAGAAAGACAGACGCTCAGACGTGGGCGGCCGAAATCGAGGGACAAATCGGCAAAGGTACCTTTGTAAATCCTACATTCGCCGAGCGCACGACACTCAATGAGCTTTTGGACCGATTCGAAGCGGAGATACTACCTTCGCTTCGCGGGCAGAAGGCCGAAAAAACCCGGATCAAACATCTACGGCGTGAACTTGGCAAGCATACCTTGGTGGAACTCACACCTTGCCGTTTAGCGGAATTCCGACAAGAACGCTTGAAAGCTCTTAGTCCGCAATCGGTCAAGCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 2 1958234-1957113 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386489.1 Methylocaldum szegediense O-12 strain O12 MetszDRAFT_MSL.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1958233 37 83.8 36 .G....TGACA.......................... ATTTAGGCGTTATGCCTTATGATTCGGCGGCTTGAG 1958160 37 100.0 35 ..................................... CAGCTCGCCGGGTACGCCGGAACCGGCAAGACTAC 1958088 37 100.0 35 ..................................... CCTTAATACCTTACTGAATCGCGTCGGGCTGCCGG 1958016 37 100.0 36 ..................................... AATTAATCATAGTCGGGGTGTGTGACAAGTCAAAGT 1957943 37 100.0 36 ..................................... TTTTTACCGGGAGCCCCTGTGCTCGCGGTCATATCG 1957870 37 100.0 35 ..................................... TCAGCAGTAGCCGCTACAGAAGCATAGATGTCAGA 1957798 37 100.0 36 ..................................... CTCACGCTCTGCGCGCGAACGCAGCACCGCAAGGGC 1957725 37 100.0 35 ..................................... CCCTAGAAACTGGTCGCCTGCGCTGCCACCGCACC 1957653 37 100.0 35 ..................................... ACGGTGTGCGGCCTGTAGCGCCGCCTCGGCCTCCG 1957581 37 100.0 36 ..................................... ATGGCCGCTTCGGTTCTTGCCTGCGCCACCTGCCGC 1957508 37 100.0 35 ..................................... ACGGTGTGCGGCCTGTAGCGCCGCCTCGGCCTCCG 1957436 37 100.0 34 ..................................... AAACGAGGCGCAGCGGCTGACCGATCTCAAGGTG 1957365 37 100.0 34 ..................................... TCCCCGATCGCCGGATTAGAAACTGCCTTCGCGC 1957294 37 100.0 35 ..................................... TGGTTCGGGGGCGTGGTGATGGATGCCGGCGCCGC 1957222 37 100.0 36 ..................................... ATCTCGGACAACCCTTTGTCGACGCCGTTGAGCCGC 1957149 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 99.0 35 GTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAAC # Left flank : CAGGCATATGTGCGATTGGAGGATCTCGCTTGCCTGCCCCATCCAGTACCTTTCGAAAATCGCTCAGTAACGCCCCAGACACCGGAGACGACTTATCCGGCGGCATGCTCGGCTCCCGGAACCGTGATGGAATGCTTTTCCATCAAACGATATAGGGTCACTCGGGAAACGCCGAGGCGGCGTGCCGCGCTGGTGATGCTCTTGGACTCCGCCAGTGCGGACATCACCGCTTGTTCGACCGCCTGAGCCTTTACCTCCCTCAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCACCGCTATGTCGACCTGTACAATCATCATATTCCTCAACGGGCCTTAGGCCATCTCACCCCGATTCAGGCTCTTAAAAACTGGCAAATGTCTCATCCCCATCTTTTTCGCAAGAAGGTTCATAATCTTGC # Right flank : CAGCACCGAGCGCTCTAGCGCCAGGCGCAATTCGGTAACTCCCGGCTTAATTGTCAAGTCCCGCACGATTGTAAACCCTCTTTCGAAAAAGATGAGGATGGGACAGTTGCCAGTTTTTGAGAGTCTGAATTGGGGTGAGATGGCCTAAGGCCTTTTGGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGCTCCGGGCTTCAAACAGAGCATAACTCCTTCTCGGTAAATAATCATACGGGACGTGACACTTAATAACCGGGAGTGGATTGAAACCCAGGGCCCGAATACCTGATTGCAATCGCCAAGGCGGAGGTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAACCCGACTCACCCATAAAGAGATTGTCGCCGGGTCAGTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 3 1965939-1962655 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386489.1 Methylocaldum szegediense O-12 strain O12 MetszDRAFT_MSL.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1965938 37 100.0 34 ..................................... GGGCGGAAACTTCGCTAGCGTATGCGGCTTGATA 1965867 37 100.0 34 ..................................... ACCTACAGACGTTTGCGACAAAAGCGAACCGCGC 1965796 37 100.0 37 ..................................... TCTTGCTGCCTGCGACTGCGCGTTTTTAACCGCTAAA 1965722 37 100.0 38 ..................................... CAGCACGGAAACCGGGTATCAATAGCCTGCTCAGAGGC 1965647 37 100.0 36 ..................................... CGTCATTCCGGCCAAAAGAGTTCGCTTTTCGTGATC 1965574 37 100.0 35 ..................................... CGATCAATTGCTGCAAACGGTCCAAGGTTTCCGCC 1965502 37 100.0 35 ..................................... AATTTATCGGAGGATAGACCGCATGAATATACTAG 1965430 37 100.0 36 ..................................... CTCGTGCGCCGCACCCCAAGCCATGCGGTCGTGGCG 1965357 37 100.0 35 ..................................... TTTAGTTTCCTGTGTTTCTTCTGAGCTTCTTTGAA 1965285 37 100.0 34 ..................................... ACTGTAGTGGAGTCAGTATATGATGTTGTCGATG 1965214 37 100.0 35 ..................................... ACGAGAAAGTGAACGAGGCGGTGCGGGAGCTCTCC 1965142 37 100.0 34 ..................................... CAGGAGTTCCTGCGCACCGAACTGGTGAAGCGCT 1965071 37 100.0 36 ..................................... GTCGATTTCCTGACCCGATTGACGCCCGACGAGGCG 1964998 37 100.0 36 ..................................... CCTGGAACACGGGGGCAGAAAATGAACGATTTCGGC 1964925 37 100.0 36 ..................................... TGTGCTCTAGCCATAGCCTGTTGCCAAGCAGCAGCG 1964852 37 100.0 37 ..................................... TGATCGTAATTATCCGCTACATGTTGAGCAAAAGCCT 1964778 37 100.0 34 ..................................... ATAGGTGTCTGTTCCTCGATAGTTGTCATAGGTC 1964707 37 100.0 34 ..................................... TCAGCTATCCTCAACAATATTGCAGAGGAACAAG 1964636 37 100.0 35 ..................................... CTTGATAGAAAAAGCTACAGGGGTATCTACCTTAC 1964564 37 100.0 37 ..................................... TCGTCTAAGGATATTACTTTGCCCGCTCCCGCCGCTC 1964490 37 100.0 35 ..................................... CAATAATACTTGTAGACGTAGATAGCGTTTCTCTC 1964418 37 100.0 36 ..................................... CTCTATTCGGCATGCATAAGTGGCACGGGGGAAAGA 1964345 37 100.0 39 ..................................... ATACTGCATTACAGCGCTGTCTGCTTGGTACGCTATATC 1964269 37 100.0 34 ..................................... ATCTTAAGACCATTATTTTATTTATGGTCTATTT 1964198 37 100.0 35 ..................................... ACGAGAAAGTGAACGAGGCGGTGCGGGAGCTCTCC 1964126 37 100.0 35 ..................................... AGGAACCGCTTAGGTTTCTTGTCTGATGAAAACAT 1964054 37 100.0 35 ..................................... AGTAGAAGAGCTTGAATATATCTTTGAGTTGATGC 1963982 37 100.0 36 ..................................... AGCAAACTTCGCATAGTGCTGTCTAAAATTCCATGT 1963909 37 100.0 34 ..................................... CCTGAAGAAACCCTTCCAGTCTACTCTATAGATT 1963838 37 100.0 36 ..................................... TTATCGTTATAGTAGGAATAAGCTAAAGTCAGAGCT 1963765 37 100.0 34 ..................................... CCAGTATTCGCCTAATGGTTTGAAATCCTCGGTT 1963694 37 100.0 34 ..................................... TTGCCATACCTCAGCTGTCAGCGTCACATTCGAC 1963623 37 100.0 34 ..................................... AATTTATCGGAGGATAGACCGCATGAATATACTA 1963552 37 100.0 34 ..................................... ATGAAACACCTTGTAAGTGTAAGCCCTGAGGTAG 1963481 37 100.0 34 ..................................... TAATCGACCACGTTTTGAGCAAGCTTTAGCGTGG 1963410 37 100.0 37 ..................................... ACAAATTGGGTAACCATTGGTTTGATGGTACTAGTAT 1963336 37 100.0 35 ..................................... CTAATCTTGGCCGCACAAACCGGGCAGGCCCAAAC 1963264 37 100.0 35 ..................................... AAAAATAGTATGGTCTATAGCAAAAGACCTTGAAG 1963192 37 100.0 36 ..................................... TTGGTTACAGCGCGGATACCTTCAGTGTTAGCCTTC 1963119 37 100.0 34 ..................................... TCGGCGATCTGAATGCTGTCCTCGTCGTAACAGG 1963048 37 100.0 35 ..................................... ATAACTCAACCTCTCAATTAGTTAAAAAAAAAGTG 1962976 37 100.0 34 ..................................... GGTTTGAGGTTCGGGCCGATAATCCGGCCGAGCT 1962905 37 100.0 34 ..................................... TTCGCGCCGAACGTACCTACTGCGGCAACTTCTT 1962834 37 100.0 34 ..................................... AATGCTTAAATGTCCGTTTTGCAAAGAGCAGGCC 1962763 37 100.0 35 ..................................... AAATATAGCAAATATCCATAAGGAATCAACCCATG 1962691 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 46 37 100.0 35 GTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAAC # Left flank : CTGAATCGCTGAGGTCAACATGTTGGTTCTGGTCAGTTACGACGTCTCGACGGAAACTTCCGATGGCCGCCGAAGGCTTCGGCGCGTCGCCAAAATCTGCCTTAATTACGGGCAGCGCGTGCAGAAATCGGTGTTCGAGTGCAAAGTCGAACCGATGCAGCTCGAAACCCTAAAGAACGATTTACTCGATATCATCAATGAGGAGGAAGACAGCTTGCGGATTTACCGGATCGTGGAACCCTTGGAGAAAAACGTCATAGAATTCGGCAAGTTCAAAGCCGTTGACTTTGCGGACACCTTGATCGTATGAACATCCTGCCGATGCGCGAACCTAGAGTGGCGGGAAAATGCCGGGACATTCGCGCAGTACATAAGCGTATGATTTTATTTGACTTCGTCACCAACGATCGCCTGTCTCGCCCATCTCCGACACTCCTTCGTCACCGGTTCGCGCTTCTCTCCTATTTTTTCTTGATTTATTCTTGCTTTGCCGAAAGGCT # Right flank : CCATCCGCTCATGTCATCCAATAATTGCCATGACGTAACTCCCGGCTTAATTGTCGCGTTCCGTGTGATTATTTACCGAGAAGGAGTTATGCTCTGTTCGAAGCCAGGAGCCTTCTCCAGGAGATATTCGGTCCGTCCAAGTGAGATTCCTCACCATGCAGATTCGTCTTCATAAAAATGCCCGTACCACACCGGCCGTGCGACAGGCCATTCAAGCGTCCACGTTGAGCGAACGCGCCTTGGCCCAAAAGTACGGCGTCAGCCGGACAACCATCCGTAAGTGGAAACACCGCTCCTCGGTCGAAGATGCCTCACACCGGCCTCACACCCTCAAGACCACACTCACGCCCGCCCAGGAAGCCATCGTGGTCTATCTCCGCCAATCCCTGCTCCTCCCCTTGGATGATCTCCTGGCCGTCACCCGGGAATTTCTCAATCCCGACGTCTCCCGGTCCGGGTTGAACCGCTGCCTGCGCCGTCATGGGGTCGCGTCTCTCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 1633341-1633559 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386490.1 Methylocaldum szegediense O-12 strain O12 MetszDRAFT_MSL.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 1633341 25 100.0 40 ......................... GAGTGTCGCGAAAGATTGAACAATGCTGCGGCTTACCGGA 1633406 25 100.0 40 ......................... GAGTTCCGCAGCTTTCGGGGCACTGGCACGTCGCGACCGA 1633471 25 96.0 39 .......................G. GAACGCAACTCACAGACGGACGCACCGAGAGAGCGGGGC 1633535 25 80.0 0 ....GA.C....G.......A.... | ========== ====== ====== ====== ========================= ======================================== ================== 4 25 94.0 40 GTTACCAATCCCAATAAGGGGTTAT # Left flank : GCCTAGCTCGCCAAATCGATAAAAAACTCCAAGCGGTTGCCGGATCTTGAGATTCGCTACAGAAAAACGGCTCTGCGCCGTATCCTCCAATCAGATTTCGTCAAGGCATCTGTCACCGACGTCGGTGCCCCTGGATTCTTCAGCGGAACGATCTTATTTCACTCATAGCGCGTTCCGTCCTCTTGTAGGAATTGATGACTTTGAGGACTAACAAGGGCGCGCTGTCTACCTCAATCGGTCATCCACAACTTTCGAGCATGACTTGACCTAGTCAAAAACTGAATCTGGAAAATGCAAAGTGAAGCGAATTAGCCTCAATGACCATAGAAGAGATTTCACCGTTCTATAGCCTCCGATTTTCCGCTATCGACTTCGATCCGATGTGAAGTTCCGATGTGAAGTAAATAATACGGATGAATGACGTAGAGATGCTTGGCCTGCAGCGCGTTTTCCTTATTCTGCTACCATTGAGAAGGTAGGTGTTTGTTGAGAAATCGGGG # Right flank : TAGGCAAGAAGAGCTCAATGAAGTCACGAACCAGAGGCTTGTTACAAATCCGGTCGTGATTAACGACAGAAGGATGTAATGGAGATCGTAGCGGTGAAGAAAGAGCCTTATGGAGGCTTCATGCATCTGGATCGATTGGGAGAAGCCCAGGGTTTTTCGGGTATAGCGCGCCAAACGCTGAAGCAAGGTATTGTTCCAGCGTTCGACGTGAACCGTTCGACCCGCCGATTTCCGGCGAGGCTGACGTTGATTCACGGGAATCACAGCGGCATACGGTTCCCAGCCATCGGTGTAGACCTCGGCCTCACGACAGCCGGCCGGAACTCGATCCCACAGCTGGCGGGCCGTCGCTTCCGTGCGGTCGCCCAATGCGTAGGCCACGATTTGGCGGGTGTGCGGGGCGAAGGCAATCCTCACCCACGCCGGTATGGCTTTCCGGCCAACGTTGCTCCGGACCCTATCGGAAGGTAGCCGTCGATGTCTGCCTATTGCATGTATCT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCAATCCCAATAAGGGGTTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1981694-1976842 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386490.1 Methylocaldum szegediense O-12 strain O12 MetszDRAFT_MSL.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 1981693 29 100.0 32 ............................. ACGTTCGGCCGCATGATGCAGGTGTCGATCGC 1981632 29 100.0 32 ............................. TCCCGCTTCACCACCATGTCATCCTCGCCGGG 1981571 29 100.0 32 ............................. CCGAACGGCTGTATCGCGCTAAGGCGCGGTAC 1981510 29 96.6 33 ............................A TGAATCGGGCTTCACACATCGTGACGCCTTTCC 1981448 29 100.0 32 ............................. CCTGGATGATCTGGGCACAACCAACAACCAAC 1981387 29 100.0 32 ............................. GCTCGATACAAGTTCGAGCTTCTACCGGTCCT 1981326 29 100.0 32 ............................. GGATTGCGGAAGCGGCGACGTTGGTGCCAATG 1981265 29 100.0 32 ............................. ATACCTAACAGTATTGAGCATGGCTGGTTTTT 1981204 29 100.0 32 ............................. GCCGCGATGATGCTGTGGGAGCAGCGCGAGGC 1981143 29 100.0 32 ............................. CCGCTCGTTCGGACTCGCTGCGCTCGCCACAC 1981082 29 100.0 32 ............................. CCGTTTGCAACCAGATCAGTCAACCCATGCGC 1981021 29 100.0 32 ............................. GATCGAGTGAATCATCCGGTTTACTAGCGCCC 1980960 29 100.0 32 ............................. CGCTAAACCTAATCCGGTCAGCTACGGGAAAT 1980899 29 100.0 32 ............................. CAGACCCTTTAGATCGTCTTGTCGGGAATGAG 1980838 29 100.0 32 ............................. CCCCTGCTAAGGGGCTATGACTCGGAGGCCTC 1980777 29 100.0 32 ............................. CACCACACCGCCCGACGCGCGATGTTGCTGCA 1980716 29 100.0 32 ............................. GCAGCGGCACAAACTCAAGCCGCCGGATCATC 1980655 29 100.0 32 ............................. CACGCGATCAAATTTTCGATCGCGGTAGACAA 1980594 29 100.0 32 ............................. CGAGCCGTCGGCCTCGACGCGCGCCAGTTCAT 1980533 29 100.0 32 ............................. ATAGCGTTGGCTGCTGATAATGATGGCGGTCA 1980472 29 100.0 32 ............................. CCGAGACGCCCGACGGATCAGCCGATCCGTAC 1980411 29 100.0 32 ............................. ACCCGCGCGATGCTGGCGCATCCGGGAACCTA 1980350 29 100.0 32 ............................. TAATCGTTCCTCGCTCCGAGGACGCCTCTTAT 1980289 29 100.0 32 ............................. TATGTCACCTAAATTTAATGTCTTTGTATTCC 1980228 29 100.0 32 ............................. GTTTCATTGAAACCCAAAAAATCCAGGGCGTT 1980167 29 100.0 32 ............................. CAAAAGGGTTCTCTTAGCGTCCTCACAGGTGG 1980106 29 100.0 32 ............................. ACAGTTAGCCGTCCGATGACCCGGCAAAAGTT 1980045 29 100.0 32 ............................. CATGATCCGCGAGGAAACCCGCTATATCTCTT 1979984 29 100.0 32 ............................. CAGACCCTTTAAATCGTCATGTCGAGAATGCG 1979923 29 100.0 32 ............................. GACCTCGTTAATCCGGCAGATGTACTTCCCGC 1979862 29 100.0 32 ............................. ACACCGTAAACGAAATAACCAAAACAGAGGAA 1979801 29 100.0 32 ............................. GTCTGTGAAGCTCTCAACGCTATGCAAGATAC 1979740 29 100.0 32 ............................. GACTTGCCCGTGCCCCGCCGTCCGCGGAGGAC 1979679 29 100.0 32 ............................. CCGGCGGCGGGGTTGTGGGCTTTGATTGTTCT 1979618 29 100.0 31 ............................. ATATTTCTTGATAAATCGCGCGCTTAATGCC 1979558 29 100.0 32 ............................. GCCGGTTTCTCACCGTTGCCGTCCAAGACTGT 1979497 29 100.0 32 ............................. CAATCCCCCGGCCCGCCCCCTCTGTATTCAAC 1979436 29 100.0 32 ............................. CGCCATTCCTCTAGCTCGATTTCGCCCAAGAG 1979375 29 96.6 32 ............................T GGCGATCAGCTTCATCTGCCGCCGCTGGTTAC 1979314 29 100.0 34 ............................. CACGGCCTTCGCTCGGAGGTTGCGACGTGCTTCC 1979251 29 100.0 32 ............................. ACCCGACAGGGGAATCACTCCGCCGTTCCTTC 1979190 29 100.0 32 ............................. TGCGGATGCCAGCCGTTGGCGCCGTGCGTGAC 1979129 29 100.0 33 ............................. GCGGCGGAACAGCTCGTCCTCGGAACGGCATGC 1979067 29 100.0 32 ............................. GTTCGCGGGGAAGTGACCGCCAATGTCTTAAG 1979006 29 100.0 32 ............................. GAAAGAATCCAATGGGTATTTGACCATCAAGA 1978945 29 100.0 32 ............................. CCGACGCAAAAGTTGAGCGGAGCCTGTATGAA 1978884 29 100.0 32 ............................. GTCCAGGCCTGCGTCAAGGGCTCCAAGCAATC 1978823 29 100.0 32 ............................. TCCCAGCAGCGCCTGAAGGACCTGGAGAAGGA 1978762 29 100.0 32 ............................. TATTCGCCCATCTCCGAGCGGAGCGCGACGAG 1978701 29 100.0 32 ............................. GCCGCACGAACATCAGGGTCCACCTGGCCGGC 1978640 29 100.0 32 ............................. AGATTGAAAAGCCCGAGACCCCCGCATACGCT 1978579 29 100.0 32 ............................. CTTGATTTCGAAAACCTGCTCGTCCTCAATCA 1978518 29 100.0 32 ............................. GAAATCAGTGAATCGACTGCGGTATGCCGTTT 1978457 29 100.0 32 ............................. AAAGTCCTTGGAGTTGATCTCGATACCTATGG 1978396 29 100.0 32 ............................. CTATTCAACTTACGATTCAGATTGGTGCAGAC 1978335 29 100.0 32 ............................. CATGAAAGGTCTACCGACTCTCCGCGAACTCA 1978274 29 100.0 32 ............................. AGCAGGTCTGAGTTTATGGCTGCTCTAAACAA 1978213 29 100.0 32 ............................. AGCCTCTATTCAACTATGCTCGATCCTCAGGA 1978152 29 100.0 32 ............................. GTTGAGCGACAGGTTCTGCCAGTCTATCCCGC 1978091 29 100.0 32 ............................. TTCCGGCGACGGCACCGACGAGCCACCAGCTC 1978030 29 100.0 32 ............................. GGTTTTTATGAAGAAGCCGAAAATGCGTTAAC 1977969 29 100.0 32 ............................. GACGCAGCATGAGTGATTACAAGCGGAAACTG 1977908 29 100.0 33 ............................. GCGAAGCACGTCAGCGGGCGTAATGCCGTTTAT 1977846 29 100.0 32 ............................. TCAAGGCGGCTGGTGCGAAAGCCGGAATCCCA 1977785 29 100.0 32 ............................. CTGTTGCGCTGGGTCACACAACATGGGATGCG 1977724 29 100.0 32 ............................. GCATACAGGCTATATCCAGCAGCAACACCAGC 1977663 29 100.0 32 ............................. AGCTGCTGTCGGTCCGCGCGGAGCAGGGCTTC 1977602 29 100.0 32 ............................. CCATCGAGCGCATCGCCGCGCAGAGTCGCTAG 1977541 29 100.0 32 ............................. GTTTTAAATTTGATCGCACCGACCGTCAACCA 1977480 29 100.0 32 ............................. CCGGTTATCAAAATATTTTCAGGGAGCCCAGC 1977419 29 100.0 32 ............................. GGGTTGCCTCCGGCCCGCGCTCTAGTGCCGGA 1977358 29 100.0 32 ............................. CGGCATTTCCGCTGGTCCATTTTGAAAGAGTT 1977297 29 100.0 32 ............................. GCGTTCCGCGAGTTCCACCGGATGGGCGTGAT 1977236 29 100.0 32 ............................. CGGGGAGTTACGCCAGCAAGTGGGGACTCGAT 1977175 29 100.0 32 ............................. TTTATAGCCGGGGGCGCGAGGAATACAAGACC 1977114 29 100.0 32 ............................. TCTTCGGTATTACGCACGCATCGAGTATTGGC 1977053 29 100.0 32 ............................. TAATGGCTCGCCGCTCACAAACCGCACAGCAG 1976992 29 89.7 93 ............TG.............G. GGAAGTCTGCGCCATAGCATCGCAAGGACACGTCCTTGTGGCCTCAGCCTGCCCGCCATTCCAAGGCGGGCGTTCGCGGCTCCTATCCCGCCG 1976870 29 79.3 0 ..CAC.......TG.............T. | ========== ====== ====== ====== ============================= ============================================================================================= ================== 79 29 99.5 33 CTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : ACCATCGAAGAAATACTGGCCGCAGGCGGACTGGAACCGCCGGAAGCACCGGAAGACGCCGTCGGCCCTGCCATCCCCAACCCCAAGAGTCTCGGCGATGCTGGTCATCGTGGTTGAAAACGTACCTCCCCGGCTGCGCGGCCGCCTGGGCGTGTGGCTGATAGAAATCCGCGCCGGCGTTTATGTCGGCGATTTGTCGAAGCGCGTGCGCAAAATGCTCTGGGCGCAGGTCGAGGCCGGCCTCGGAGACGGCAACGCGGTGATGGTGTGGTCCACCAATACTGAATCAGGCTTCGACTTCGTAACGCTCGGCAAGAACCGGCGCATGCCCGTCGAACTCGACGGCCTGAAACTCGTGTCCTTCTATCCTCCCGAACCGGCCGACGGGGAGGGAAAAGATGCTCTTTAACAGCTTGGATTTTTCATTTTCAAAGCGGCTATTGGCCGGTAGAATTTCTGCCGGCCTTTTTCGCCATTTCTAACAAAGGGTTAGAAATGGT # Right flank : CGCTTTTTGCCTCGTCACCGAGTAAGCCCACATGAAACCAAACGCAGTGAAATTCCGGGAGGTCGTAGCGCCGATCATCCCGGATTCTGCAAGCTCATCCGGGCTACGTCGGCTGTACGCTTACTCGCGACCCGTGATATTGAGCCAATGAGGGCGTCGGCGACGGGTAGCCGATCGACCCATGCTCGGATCGATTCATCCGAACCAAAGGCACCACCCGTCGAGCATCTTTTGCCGTACGAGCGAGATGAAAACGTGCTAATGCGCTTTGCCGATGCCTGGGACGCGAAATGCCCGGCCACCGGCCGAAGCGGCCGGCGGACGCGCTACTTCTAATCCGCAAAGGCATGCCACCGCCACCGTCGAGTCGCTCGACGTCTGTCCGCACAAGCCTCTCAGGACAGTCCCTTCGACTTAGCTCAGCACCGGCCCGACGAAGGGCTCAGGACGAACGGCTTACCGGAATAGGCTCTTGGACAAGGTGGTGGGATGGGGATTCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2176883-2176340 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386490.1 Methylocaldum szegediense O-12 strain O12 MetszDRAFT_MSL.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2176882 37 100.0 35 ..................................... TAGGTCCTCGATCTGCGAGTACGCGGCCAACAGTT 2176810 37 100.0 37 ..................................... CTCTAAAAACGCCCTCTCGTGTGGGTGCCAGTCCAGC 2176736 37 100.0 35 ..................................... TAACTCTCTAGCCCGCCGCTTGGCGGCGAGGATGG 2176664 37 100.0 36 ..................................... CCTTTTGAGCGAAGAGATCTACGAAATAGCAGAACG 2176591 37 100.0 34 ..................................... TGCCTCGACGTTTGCGGGCCGAATGGATACGCCC 2176520 37 100.0 34 ..................................... TCATTATCGCGGCTCAGTTCGACCAGGTAGTGCG 2176449 37 100.0 36 ..................................... CTGATGACATAGTCCTCGGTCGTTCTCCCGTAGGCG 2176376 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 100.0 35 GTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAAC # Left flank : GAAATGCAGCTCTACCAGCTACCTTGGCCTGTCGACGTATTGCGCCAACTTCCTCCTGAACTGGAGGTGAAGCTTCGCGTAACGCTGTCCTATTTTATTGAACCCAACCCCGGTCGACGGGGCTATCGCCAGCGCTATAGCTATCAATCTCATGGACTGCGATTCAAAGTCATTCGCCCCGGACAATCGCTCAAGAATTTCCGCGCTTCGATAAACGACCTGGCAGTGGCCGAAGATTACGATGGCCCCGAAGGTGATGGATGTCAAGTCCCGCAAGATCGTAAACCTTCTTTCGAAAAAGATGAGGATGGGACAGTTGCCAGTTTTTGAGAGCCTGGATCGGGGTGAGATGGCGTAAGGCCTTTTGGGGAATGTGATGATTGTACAGCTCGACATAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GACAATTAAGCAAACTGCCGTTATCGAGAGATGACAGCGTTTTCGCCGGGATAACGTCATGGTGATTTTGTGATTTTGGGTGAGTCCCGTTGCTCGGCGGGCAAATCACCTGGTCGCCATGCTCCTGCTTGGTGGAGACATCCCCGCAACAGCAGCGTGCGCTTTCGACCGTATGTTGAGTACAGTCCTTCAGACAGGCTCAAGACAAACTTGCCGAACGTTTTGCTGAGCCTATCGTAGGGCATGAAACAGAATCTACGTTAGAACCTCCCTAACCTGGCGTGAAAGGGCGAGGAAGCGATATGTAGGGCGATTTCGTCGATTCGTGTCCCCCTGGATTAGGCGACAACGCGTATCGACGTTTAGGCTTCTATCACTTGAGACGCGGTGCCAACAGGATGGGAAGATAGCGCACCACGAACACGACATAGGCTGCGCTCCACAACCCTACCGCGGCCGCCATGGCGAGCCCACCCGGTTGCGCAAAAAGGCGGAAAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACTCCCGGCTTAATAACCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 4 2476892-2473342 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386490.1 Methylocaldum szegediense O-12 strain O12 MetszDRAFT_MSL.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2476891 36 100.0 35 .................................... ACACCTATGAAAATTCGCTGGAACTCGGCACCCCA 2476820 36 100.0 35 .................................... TGCCATCCGGAGTACGGATGGTGATGGCGTGCGGA 2476749 36 100.0 32 .................................... AGTCGACCAAAGGAAATTTCGCTCTGAGATCA 2476681 36 100.0 35 .................................... CATCTTCTCGCGATTGATTGCGATATGCATAGTGG 2476610 36 100.0 36 .................................... CCCCTTTAGCGTTTGGATGTCTGTGATTATGCTCCG 2476538 36 100.0 34 .................................... CTCAAGCCAAGATCGGTGTCGTAAAAGCTACCCA 2476468 36 100.0 34 .................................... CTCGTGCCGAGGAATGTATACTCGGTCCACTCTT 2476398 36 100.0 33 .................................... TTGCGGCTTTTGCCGCTTGCTGTCTCTTAGTCT 2476329 36 100.0 33 .................................... AAAGCTCGAACTTATACTTCGCCTTTGCCCGAT 2476260 36 100.0 36 .................................... TTCCAATCAACAAACACATCAACACCATGGTCTCCC 2476188 36 100.0 33 .................................... CCGCATTTTGCGGGTTTTGGCGAGTTTCTCCGC 2476119 36 100.0 34 .................................... GATTTTTCAATCCAGAAATCCCATACCGTTTTTT 2476049 36 100.0 34 .................................... GTTGGTCAGAGTGATAGTTTTCATCACCTTATCT 2475979 36 100.0 35 .................................... ATCAGAGTAGTCGCCTTGATGATTGCCCGACTGCA 2475908 36 100.0 34 .................................... TATCTTGTCTAGTCGCAGTTTCCCATTAGGGAAC 2475838 36 100.0 34 .................................... GTTCGTTGATCTCAATAGTTCTTCAACCACGGCC 2475768 36 100.0 32 .................................... CCAGCACTGGCTAGTCTTCGCTTCCGGGGTGG 2475700 36 100.0 34 .................................... CCAGCGGGGTAGCTTGTACCCGACCGGCACTTTT 2475630 36 100.0 35 .................................... GGTCCTTGATTTCACCACTACTGAACTTCTTTAGC 2475559 36 100.0 36 .................................... CTGGCGCGAAATAGCTACTAAATCTTTCATTTTTGT 2475487 36 100.0 35 .................................... TAGTATGTGCCCATAGATTTTCTCCTTTAGCGTTT 2475416 36 100.0 35 .................................... AGTTCCTTTCCAGTTCATCTTACTCATTAACTTTT 2475345 36 100.0 34 .................................... GGCGGCAAGCTTGCGGGTTTAGACAGCGTCGGTG 2475275 36 100.0 33 .................................... GCGTAGTCGATCCTGTTTTTTGCATTGTCAATC 2475206 36 100.0 33 .................................... ACGACGAACGCGGTCAAGTTGCTCACGACATAC 2475137 36 100.0 34 .................................... ATTTCTCCCAAACGCTTTTCAACGATGCTATCCG 2475067 36 100.0 33 .................................... GGCTGTAGAGCACTAATTTCGCGCCGGGATTCA 2474998 36 100.0 34 .................................... ATTTCTCCCAAACGCTTTTCAACGATGCTATCCG 2474928 36 100.0 33 .................................... GTGATGGCGTTGTTCTCCATGCTCTACCCCGAC 2474859 36 100.0 34 .................................... GTGAAGTGTTTTTCGCTTTCGCACTTGCGCATTA 2474789 36 100.0 36 .................................... GTCGACGGTCGCGACATAGTTTGGATCGGCGTATGT 2474717 36 100.0 35 .................................... GGCCGGATACTTCCATGACTCCCCATTCGGGTAAA 2474646 36 100.0 35 .................................... ACACTCGCAAGTACCGCTTTTTCGGGCGCGAAAAA 2474575 36 100.0 34 .................................... CGCCTACCATTGCAAAGCTGCAAACAGCGATACC 2474505 36 100.0 33 .................................... ACTCTCTCTCGATTTCTCGCCTTATGTAGGTCT 2474436 36 100.0 35 .................................... GAGGAGACGATGAGATACTTTGCAAAGAGCTTCGG 2474365 36 100.0 35 .................................... TTCCCGCTCACGGTCTGTAATCTGGCGGGAATACT 2474294 36 100.0 34 .................................... CTACAAACAAAAACAATCTTAAGATTTCTTAAGG 2474224 36 100.0 35 .................................... GCCGCCTCAGATTCGTCGTTATGACTGACCTGCAC 2474153 36 100.0 36 .................................... GATTCGATCCATGGCATCCTCCTCTCGGTTGCCTGC 2474081 36 100.0 35 .................................... GCCGCCTCAGATTCGTCGTTATGACTGACCTGCAC 2474010 36 100.0 36 .................................... GCCCTCAATGGCGTCCATTGCGGCGAGCCCGGCAGA 2473938 36 100.0 35 .................................... CAAGCCCGGCTGAAGTACATCCTGCATCCAATTCC 2473867 36 100.0 34 .................................... CTATAAGCTCGATCATAAGCTTGTTTGAGAGTTA 2473797 36 100.0 34 .................................... TGCGTTGGACATACCTAAGCCTCGCTCAAGGTCC 2473727 36 100.0 34 .................................... ACGAGTTCCGCCGCGAAGTCGATCCGATTTTTTG 2473657 36 100.0 34 .................................... CGGGCGAGTTTTTTTTATTTGTCATACCGCATCC 2473587 36 100.0 34 .................................... GCCTCAGCAATTTTGTCTTTCCGCATCGTTAAAA 2473517 36 97.2 34 ...................T................ GGGGACATGGTTTTCGAGCCGTCGCTCTAGGCGC 2473447 36 97.2 34 ...................T................ TTGCCGCGAAGATGCGGCAAGGCGGCCAAAGCAG 2473377 36 80.6 0 ...................T........G.ATCC.T | ========== ====== ====== ====== ==================================== ==================================== ================== 51 36 99.5 34 GTTTGAATCGAGACCTGATCAAGAAGGGATTAAGAC # Left flank : GATATATCTCGCTTGCCGGCCGATTGGCCCGAGGGACACTGGCAAGACCTGCTCCGCGCCGCCTTCGCCCACGCCTTCGACTGGCTGGGTTTCGGCGCCAAGACCGCAGTCGGTTATGGTGCACTGAAAAGTTCGGCGAAAACCGGCGAGCCAGAACTTACCGAAGCCGGAGACGTGATTTGGGAAAACGCGCGAGTATCCTATAGTGTGAATACGCGGGAGATGGTTGCCGAAGTGACAACCCAGAAAGCCATCCGGCGGGAAGCCAAAGAGTTGTTCGATGCCTTGAGATCAAAGCGCCGACAGGAGAAAGCGAAAAATAAGGAGCTGATAGCGCGAGTTAGAGTCCGTTTGCAAAACGGAACTGCTGAATTGCTGGAGGTTCTACCGGAATGACACCCCGAAATTCGCGCTTGTTTGATGCTAACTTTTCGGCAAGCCAAATTTTCTGCAATCCCCTTTGTAACCTATTGATTATGGAGGTGTTTTAGACGAGAGCC # Right flank : AAAAAACCTGAAAAGGCCGTAGGATGCAGTGACCGGAGGGAACCGCATCGTTCGCGTTCTCGACCATGCGTTTTCAATCGCAAACCGTCGTCCTGGGAGCGCAGAAAACCGAAAGATGCGGTTCGTGCCTCACCGCATCCTACGGTCTGCTTGTCATAGCGGATTTGAATCGAGATCACATATCGAAAAGCCTTCTGCGGAAGAGGCCATGAAAAACACCGGAAGCCGGGGAATATTCATAGCGTAGAATGCGGGGACCTCAGAAAAACCGATCTTCAACCGAACTCGGGACAGGCCCTTCGACCGGGCTCAGGACAGGCATCATTCGTGAAAGATGCGCCTGTTTATCGGCATACCCTCCAAGGGTTATCAAATCCCTGAAACCATAAATTAAGACCGAATTCCTTGGATATTCCCACTGAGTATGTATGACCTATGACGACTTACTTCGTAACCCGCCATCCCGGCGCCGTTGATTGGGCGCGCGAGAGCGGAATTTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAGACCTGATCAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 2493184-2486632 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386490.1 Methylocaldum szegediense O-12 strain O12 MetszDRAFT_MSL.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2493183 36 100.0 35 .................................... TAACATCAAATTGGTGCTCCGTATGCCCGCAGCTG 2493112 36 100.0 35 .................................... GGCAATCGAACGAACCAGCTTGCTCGTTTTCATCT 2493041 36 100.0 35 .................................... TGAGCGATTTCAATTAGGGCTCTAACGGATATTCC 2492970 36 100.0 35 .................................... TATAAAATCTGCTCATAACTTTGTCTCCACTTAGC 2492899 36 100.0 34 .................................... CAATAGATTTCCTCGATGTTCGTGGCGCGAACGG 2492829 36 100.0 34 .................................... GTGGTAAAAGCCGCCGGTTTGGTAGTTTGTGCGT 2492759 36 100.0 34 .................................... TTTTGTCTCCTCTTGAACTTATTGGAGGGCTGGG 2492689 36 100.0 31 .................................... TCGATACGGTAAACAACGATCAGATACTGCG 2492622 36 100.0 35 .................................... TCCTGCATTTCGGTCATGGTCGTGTAGGCGTATTC 2492551 36 100.0 34 .................................... CCGGTCAATACGTGTCACTTCTGATATGTTCATC 2492481 36 100.0 34 .................................... AGCCTTGCCGAGCCTTGCCTCGAATCTTAAACCC 2492411 36 100.0 32 .................................... CGATCTCTTTGGGAGTTGCTTTCGCGTAATCG 2492343 36 100.0 34 .................................... GTCATAGACCACGCTGGTTACCTGGCCCACAGCG 2492273 36 100.0 35 .................................... CATCACGCAGCACGCCTTCCCAGTGACCTACTGAA 2492202 36 100.0 35 .................................... GGCAAACATACCGCTATCACCTCGGGACCTCGGTT 2492131 36 100.0 34 .................................... GCATGGGCTCACCGCCGCTGAACACCACCAGCTT 2492061 36 100.0 35 .................................... AAGCAGGCAAGGTCGCTGTCTGGTCTGGTTCAGCA 2491990 36 100.0 34 .................................... TTTTTACAGAAAATTCAATCATTTTTGTCTCCCC 2491920 36 100.0 34 .................................... CACCATGTAATTATACACTTGGCGTACCGATTCT 2491850 36 100.0 34 .................................... TGCCGTATTCCTTGGCAATTTGAAGTTGCCCTTC 2491780 36 100.0 35 .................................... AGCTCTTCAATAATCATGGTTTTTACTCCTCTTAT 2491709 36 100.0 33 .................................... GCATAGTGGGTTCCCTGTCATAGTAGTTCGGTA 2491640 36 100.0 34 .................................... TTTAGCTCTTGAATCAGCTTTTGAATCATGGTCT 2491570 36 100.0 35 .................................... GCTGATTCCAGTACTCGTTCTTGAAGGGGTAGGGA 2491499 36 100.0 34 .................................... GTTTCTCTCCCTTTGTGGTCCGTGCGGCGGACCA 2491429 36 100.0 34 .................................... TGTGTCGAATGATATCGAACACCGGGGTAGCCGG 2491359 36 100.0 34 .................................... CTCGATCAGCTGGTAACCGAACTGGCCATCGATC 2491289 36 100.0 34 .................................... CCAAGGTAGTGCCGGTGTGTCGAATGATATCGAA 2491219 36 100.0 33 .................................... CACTTGAAAACCAACACCCCCCCGGGTTCTAGC 2491150 36 100.0 33 .................................... CTTTTGGTTGCGCCACGTTTCTGCGTCCGTCAC 2491081 36 100.0 34 .................................... ATTGCGTGAGGCGTTAAATTGATCATTTGTCTTC 2491011 36 100.0 34 .................................... GTTTGCTGCATGTTCGATTGCTTGCTGTAATTTC 2490941 36 100.0 33 .................................... AATTGGTCGAAAGGGTAATCTGCTCGTCTGAAT 2490872 36 100.0 33 .................................... CTCCTTCGCAATTAATACTCAATAATCAATCTT 2490803 36 100.0 36 .................................... TCTTGGGCACGGATGACAATTGGGTGAGGAGTTAAG 2490731 36 100.0 35 .................................... CCAAAAGTCCCATACCGTTTTTTTCGGTTGAACAG 2490660 36 100.0 34 .................................... CGTGTAACGGCGATGACTTGCCCGGCATCGTTAC 2490590 36 100.0 34 .................................... ATATAGGTCGTCGGCTAACTGGCGGGCGATGGTG 2490520 36 100.0 34 .................................... GAGACCTTCCCGCGAAGGTACGGAAGAGCATCTT 2490450 36 100.0 36 .................................... GAGGCCCTTCTTGTGATAGTTCATGCCAGAGCCTAG 2490378 36 100.0 34 .................................... ATTGCTCATCGTCATATCTCCATAGGTTATACCC 2490308 36 100.0 37 .................................... CGCTTCGTAAATGACGTTTTTCATGGGTGGAACCTTC 2490235 36 100.0 33 .................................... GGTATCCGGGACCATAGTCAATTCTCATTTCCG 2490166 36 100.0 35 .................................... ATGCCCGGTGTTCCAAGCTTTCAGGAGTGCGAGCG 2490095 36 100.0 33 .................................... CTGTTTCTTAAGTTGATTGATCATCTCTTCACC 2490026 36 100.0 33 .................................... GTGAGTTCTTGCGTGACATACTTAAGGAATTTC 2489957 36 100.0 33 .................................... TTGATTAGCGCCCACATTTCGTTGCGCTTTATG 2489888 36 100.0 34 .................................... TGTTAGGTATTTCTTGTAATGCTCAACGCGTTTG 2489818 36 100.0 32 .................................... CGAGCCTATTGTTCTTTTTGAAGGGAAGATAC 2489750 36 100.0 34 .................................... GATCGCTTCCGTTCAGTGTCTCAGTGGCCTTCCG 2489680 36 100.0 35 .................................... GCCGACGCCAGGACAACCGTGATGACCATCGGACG 2489609 36 100.0 34 .................................... CGATTAGTTCGGCTTTTGTTGCTCCAATTCGGCG 2489539 36 100.0 34 .................................... CGGTCCAAATACTCGTCCCCATTCTCCAAGGTCC 2489469 36 100.0 35 .................................... TGAAGCCCCGAAATACTATTCACATGCGGCATAAA 2489398 36 100.0 34 .................................... TGTTGACTATGAGCAATATGTCATTCGCTAACGC 2489328 36 100.0 34 .................................... GTGCGTCCTTTGCTTTTATCGCAAAGGCTCCTAC 2489258 36 100.0 35 .................................... CTAGCGCTTGCGTTGGACATGCCTAAGCCGCGCTC 2489187 36 100.0 32 .................................... TATCTCGGGTGGTGAATCCTGTGCGGGACTGG 2489119 36 100.0 34 .................................... ACTGTTTACAAAACAAGACCGCCCCTAGGCTTTA 2489049 36 100.0 34 .................................... CTCCCCTTTAAGTTACTATTGATTAGGTTATGCC 2488979 36 100.0 34 .................................... CATTAGGCGATTGTGCAAGTTAGTGAATTCGGTG 2488909 36 100.0 32 .................................... TCGGCTGGGAGATGCAGTAGACCTTCCTTTCC 2488841 36 100.0 33 .................................... CGGCGTTGTAGACAAGGTGGTAACATTGATTGC 2488772 36 100.0 35 .................................... CTCCTTGATACAACGCGTCTTTTCTTTCCGATGAG 2488701 36 100.0 33 .................................... TAGCGTTACCCGCTCTTTGAAGAGTTCCATGTT 2488632 36 100.0 37 .................................... GCACTTGATCAAGTTCGGCTTTGAGTGTGGCGAATTC 2488559 36 100.0 33 .................................... CGGAAGTCGACTCCGATCTGTTCAATTTCCTCG 2488490 36 100.0 32 .................................... GTCTGTAGGAATGTAAATGCTCCTTAAGTGTA 2488422 36 100.0 34 .................................... GAATCGCATCGATGTTGGTAGCGCTGACGGTATC 2488352 36 100.0 35 .................................... CTTTGTAAACAAATACTGTTAAATGGTTAAGAGCG 2488281 36 100.0 35 .................................... CGAAAGCCTCGAAGCCATCTACGTCACCAGCCAGG 2488210 36 100.0 33 .................................... GGAGGACAGTGAGCGGTTGCGGGCGATTATTAA 2488141 36 100.0 35 .................................... CAATTTGGCGTAGGAAACGATCTCGCCGACCTGAG 2488070 36 100.0 32 .................................... GATTAATTCTTGAATAGTTTTCATAGTTTCCC 2488002 36 100.0 34 .................................... GCCCCTTCGTTGATAAGCTGAGTGTAATCGATGT 2487932 36 100.0 34 .................................... CGAAACCGCTATGAAGATTTCGACGAAGCGAAGA 2487862 36 100.0 36 .................................... CTTATCTCCTATTGATTGTTGATCGGTTGAATGTGC 2487790 36 100.0 34 .................................... TCAGATCAAATCAGATTGTTTCCGCATCCTTGCC 2487720 36 100.0 34 .................................... TGTCCGTCCAGGATCGCAATCAAATCCCGGATTT 2487650 36 100.0 35 .................................... AGAAAAAATGGAACGAACATTTGGGCTGCTGGCAT 2487579 36 100.0 34 .................................... GCCTTGGCAGCGAAGTAATCGCGGATAGACATCC 2487509 36 100.0 34 .................................... CGAAACCGCTATGAAGATTTCGACGAAGCGAAGA 2487439 36 100.0 36 .................................... CTTATCTCCTATTGATTGTTGATCGGTTGAATGTGC 2487367 36 100.0 32 .................................... TCGTTTATCTTCTTATTGATGAAAGAAGGCCA 2487299 36 100.0 33 .................................... TTTTCAGCTTCTTCTTGATTCGCAACTTCCTCG 2487230 36 100.0 34 .................................... CATGTCAGATACTCTCTATGGCTGATACGAGTGC 2487160 36 100.0 34 .................................... CTCGATTGGCAAGCTGATCACGATCGGCCTTGAG 2487090 36 100.0 34 .................................... GTCTGGACAGTTACAGTTTTTGTCTCCAAACTGA 2487020 36 100.0 33 .................................... CATTAACAGCCGTCATGTTTTTGTCAGTCATGT 2486951 36 100.0 34 .................................... TCCCCGGTAATGCCCATTTTGGTGGGCTTGTTGC 2486881 36 100.0 34 .................................... TCCCCGGTAATGCCCATTTTGGTGGGCTTGTTGC 2486811 36 100.0 34 .................................... TCCCCGGTAATGCCCATTTTGGTGGGCTTGTTGC 2486741 36 97.2 34 ...................................T TTACGATGAGTCCATGTTTACAGCCATCTGCTGA 2486671 36 80.6 0 .......T..CT....C..A...........C...A | C,A,AT [2486635,2486638,2486652] ========== ====== ====== ====== ==================================== ===================================== ================== 94 36 99.8 34 GTTTGAAACGAGACCTGATTAAGAAGGGATTAAGAC # Left flank : ATGAGGCCGGCAGGCAACCGCGATTCCCGCTATCACGTACGGATTGTCGGCTTGCTGGAACGCTTCCTGACAAACTGAGAGGCCTTTCCGAAGTGCAGTGTGCAAACCGCCAACGGTATAAAAGTCGCCGACGTTGTTTGGGCGAGCCGGGACTTTCTGGCTCGCAACGGCGATGCCAGTCCCTATCTCGAGGCCCGTGAAATCGTGGTCGAAGTGCTTTCGCCATCGAACGGCCTGGCCGAAATGGAAGAAAAGAAGGAACTTTATTTCGCCCGTGGCGCGCGCGAATTCTGGGTGTGCCAAGAAGGTGAAATGCTGTTCTACAATAACCACACCCGGCTCGAACGCAGCACCCTCGGGCCCGACTTTCCAACCCGTGTCGAGTTACCCGCATGAGGCCCCAAAAATCGCCCTCGCTCGACGCTAACTTTTCGGGAAGTCAATTTTTCTGCAACCCCCTTTGTAACCTATTGAATATGGAGGTGTTTTAGACGCGAGCT # Right flank : AAACATGAACAAAAGGCCGCAGGATGCGGTGACCGGAGGGAACCGCCCTTCGACCAGGCTCAGGACAGGCCCTTCGACTACGCTCAGAACAGGCCTGTCGAACGAGTTATCAACGTTACTTTCTCGACATATAGCCCAGTCGCGACTGCGTCCGCTGCTGTCTTCACCTAAACTGAAACGATCTCCCTAAACCAAAGGTTGACATTCCCATGCCACAACCGATTCTGCTCGTCTGCACTGTAGGTGGATCCCATCAACCGATTGTTTCCGCTATCGAAATTTTGAAACCGGATTTCGTCTGCTTCATCTGTACCGGTAGAGACCCGGGCACCGGGCGGCCGGGGTCCGAGATCCAGATCACCGGAAAAGATTTCTGTATAAAGGCGAACTTCAACGACGAACGCCCCAGCTTGCCGAATATCCCCACTCAGACTGGACTGGATGCGGACCGCTACGAGGTGAGGCTGTGCCCGGCGGACGATTTGGATGCCGTGTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACGAGACCTGATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 2648266-2648797 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386490.1 Methylocaldum szegediense O-12 strain O12 MetszDRAFT_MSL.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2648266 36 100.0 35 .................................... GTTGCGTCGAAGTTCAGTTGTGCCATGTTACATTG 2648337 36 100.0 35 .................................... CGATGTCCAGGATGCTGATGTCGTCCGGGGTTATC 2648408 36 100.0 37 .................................... TTCCGATCGGCATACAGAATCCAGTCCAAGGGCGGCG 2648481 36 100.0 34 .................................... CGGTCATCCCGCGCAAGCCTAGATCCGTCTGATA 2648551 36 100.0 34 .................................... CAATAGATTTCCTCGATGTTCGTGGCGCGAACGG 2648621 36 100.0 35 .................................... CTAGCGTAGAGCCTGTTTGCAGAATACAAATCATC 2648692 36 100.0 34 .................................... CTGATCTCGGCGTCGAACATCCCGTAGGGTCCGG 2648762 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 8 36 100.0 35 GTTTGAAACGAGACCTGATTAAGAAGGGATTAAGAC # Left flank : AAATCATCCGCCAAAAGGCCGAAACCATGGGCATTCAATGCCACGGCATCGAATGCGTGAACAATCCCGACGATCCGGCTGAAACTCGCGAGCGCACCCATGCGCTGATCAACTGCATGCGGACATCCGGCGCCACTCGCTGCGCTGTCGATGTCACCGGTGGCAAGACACCCATGAGCCTTGGCGCGTTCATGGCCGCCGAAGAAACAGGCTCCAGCACGCTTTATCTAGCATCCCGTTACGACGACGAACTGAAACGCCCCGACCCTCTCAGCTCCCGCATCCACTGCATCTCCAGACCGGAATAGCCATGTCGAGCATTGCTTTGATCATTGTGGACCATCCCCCAACGGCTCCAAACACCGAGCGAGCAACCGGAAACTTCGTGCCGGCAAACCGGTTGAATCGACCACGCTTGAATGCTAACTTTTCGGCGCTTCAATTTTTCTGCAACCCCCTTTCTAACTCATTGAATATGGAGGCATTTTAGACGCGAGCCG # Right flank : CTATACAAAGTGCGTTAGGGTGCTGGTTACTTGTCAAGTCCCGCAAGATCGTAAACCTTCTTTCGAAAAAGATGAGGATGGGACAGTTGCCAGTTTTTGAGAGCCTGGATCGGGGTGAGATGGCCTAAGGCCTTTTGGGGAATGTGATGATTGTACAGCTCGACATAGCGGTGCAGGGTGGTGTCCAGATCGGCGGTTGAATCGAAGTGATGGGTTTGCAACACCTCCTCGATGCGGCCATTGAAGCGTTCCACCAGGCCATTCGTTTGGGGCCGGCCCGGCGGAATCAGGCGATGTTCGATGCCTTGTTCAGTACAGAGGCGGTCAAACTCATGCGTCCCCGAGGGCTGCCGAGTTCGGGTCAGGAAACGGTCGGTAAACTCCGAGCCGTTGTCGGTCAGGCATTTCTGGATGCGGAAAGGCGCGGCCTGAATCACCGCTTTGAGGAAGTCCTTTGCGCTTAAGGCGGTGCGGTTGGGCTTGAGGGCGACATAGACCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACGAGACCTGATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //