Array 1 1428-1644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009222.1 Corynebacterium deserti GIMN1.010 plasmid pCdes2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================= ================== 1428 32 96.9 29 .............................T.. GATCGCTCTACGGCGCTTCTAGAGCGTTT 1489 32 100.0 29 ................................ CAAGATTCACTCTGCGGGTGCCGATGATT 1550 32 100.0 29 ................................ CAAGATTCACTCTGCGGGTGCCGATGATT 1611 32 96.9 0 ............................A... | G,C [1639,1642] ========== ====== ====== ====== ================================ ============================= ================== 4 32 98.4 29 GTTCTTCCCACGCACACGAAGAAGATCCCGTT # Left flank : AAATCCGGGTAAAAATGTGAAACAAAAAGCAGGGTTAAACAGGTCAATTCTCGACATCTCACCAGGGCGTATCCGCACGTTGTTGGAGTATAAATGCGCTGATCGCGGTGTTGAGATGCAGGTTATTGATCGTTTTTTCCCCTCATCGCAGTTATGTTCGTCCTGTGGATCAAAAACCACGATCCCCTTGGCGAAACGTATCTATCACTGTGATGTGTGTGGTGGTGTCATTGATCGTGATGTCAATGCCGCTATCAATATTGTCTATGAAGCCAAGCGATTGGTAGAACAAAAATGTAGTGAACACTCGGCTCCGGAGGGGGCAGAGGATAAACGGCCGTGGAGTGTACATCTCCCATCAACGCAGTATGTTGATGGACTGCATACGAGGAAGCGGCAAGGCCCCAGCGGTCATAGCAGTTGAGTAATTGGCTGCTCTTTATCGTGTTGTGTTGAAGGAAAATCGTGGTAAGTGGTGATGGATTCGCTGGTCAGGAAGA # Right flank : TCCTGATCTAGATGACGCTGATGGTGGAGTTCTTCCCACACGCGTAAGGGGCATTCCCGGGCGCTTACTGGTGAAAAATCTGCGCATAAACGGTCACACCACCCACTGCCCTGACCAATGTGAGAGTGCTTATGCGCAGCCTTTCATGACGTTATTAGGCATTCAGGCCGCTAGAAACGTGCTGCACCCGCACCCCCTTAACTAGCTGCACAAAGACCACCACAAGGCCACAGGCTCTACCCCTTATAGATCCAGCCCATGATCATGGCCACGGCTCTGATTCATCCCAAACTGCTGATCTGCGTTTAGATCAGCACCCGATGAATTGGAAAAAGACGACGCATTCAGATCAAACGTCGTTGGCTGTAGCTGTTCCGCAAACGCAAACGCCACCGCCGTTCGTGCACGACTACACTCCTCACGCACCTCTTCACGACGCTCCTCTACCACTGTTGCTTCCTCCACTACTCTCTCGCGGTGCTCCACCAATTCCGTGTGTT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCCCACGCACACGAAGAAGATCCCGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 355750-350834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009220.1 Corynebacterium deserti GIMN1.010 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 355749 29 96.6 32 ............................G TGCATTTGAAACCAGAGATACGAAAAGAGGTA 355688 29 96.6 32 ............................G GATCTGGAAGAGGACCTGCGTCGCAGGTACAC 355627 29 100.0 32 ............................. CCTGGAGAACACCCCATGAAAATCGCCACACA 355566 29 100.0 32 ............................. GGCATTCGTCGAGCGTGGAACGTCATGGCTGG 355505 29 96.6 32 ............................G CCATGATTAGACCGAACCCACTCCTCAGTCTG 355444 29 100.0 32 ............................. GGGCACACCAAGAACTACGGGCCCGCATCGGG 355383 29 100.0 32 ............................. TTCAATATGGCGACCATCAGAACTTAACGTTT 355322 29 100.0 32 ............................. GGGCCTTGGTGGTCACCTAATTTAGTCACTGT 355261 29 96.6 32 ............................G AAGAAACTGGTGTGACTTTGGGGGATGATCCT 355200 29 96.6 33 ............................A CAACAGACAGCTCATACGGCGTAGCGTAATCAG 355138 29 96.6 32 ............................G CGCTAACCCGATCCTGTCAACACTTGGTGGCG 355077 29 100.0 32 ............................. ATGGTTTGGGAGCCTATAGCATCCTGGGAGAC 355016 29 96.6 33 ............................G CACTCGTGCCTGACAGGTTCCCACAGCCGAATC 354954 29 96.6 32 ............................G CTTCGGTTCGGTGCTGGATGGCGAAGTGATCG 354893 29 100.0 32 ............................. GAACCGTCACCTTGACAGGAACGTCAGTGCCA 354832 29 96.6 32 ............................G CGGCGTTCGTTGGCGTAGGCGATGTGAGTGTC 354771 29 100.0 32 ............................. TTCGCTGTGACTCACGGTGGTGTCACGCTGTG 354710 29 100.0 32 ............................. TTCGCTGTGACTCACGGTGGTGTCACGCTGTG 354649 29 100.0 32 ............................. CCGGAAACAAACCCCGACATGGCCTCCGCGTG 354588 29 96.6 33 ............................A CGCCACAAACCGAGCACAATCATGATCAACGTC 354526 29 96.6 32 ............................G GAACTCGCGGGTGAAACCGCCCTGATCAACAT 354465 29 100.0 32 ............................. AGTGATACCTCGCTTTGCCTCATTTGATACCT 354404 29 96.6 32 ............................G AACGGAATCGTTTTTGAGGAGACCGGCACGTG 354343 29 100.0 32 ............................. CTCCATGCGGGCGGTAAGGATAACGGGCCCTG 354282 29 96.6 32 ............................G CCGTCAACGTGTGGGCAATGGAGTTTGTCAGT 354221 29 96.6 32 ............................G CAGGCTGCGTCGACGATCCGCAAGGAAATGGC 354160 29 100.0 32 ............................. AGCCCAAGCAAACGCCGAATTGAATCATCAAT 354099 29 100.0 32 ............................. CAGTGCGCGGGAATCCGATCAGGGCTGACCCG 354038 29 100.0 32 ............................. TGTTGCAGTTATAGCCTAGAGAAGAGGATACA 353977 29 100.0 32 ............................. TTGGCTCTTTCCGTAGCTCATGCTGTGGAGGG 353916 29 100.0 33 ............................. GAGTCACATGACTGCTCGACCTTTCCATATTAA 353854 29 100.0 32 ............................. TGGCATTGAGCTTATCGTTGCTCTTGGTCAGG 353793 29 96.6 32 ............................G GAGACTAAAAGCATGCCAACTTGTCACGCTTC 353732 29 96.6 32 ............................G TCAAAAAAGTTGTTCTCGACCCAGACGGACGC 353671 29 96.6 32 ............................T AGGTGCCACCGCAGGAGCTGACTTGAGACCAG 353610 29 100.0 32 ............................. TCGCCGAACTTGGTATCGAGGTTGAACATCTC 353549 29 96.6 32 ............................A CGGCAGGCTGACCACCTCGCACCAAGCGGAAT 353488 29 96.6 32 ............................G CAGCGGTGCTAGAATTACGGTAGCGATAACGC 353427 29 96.6 32 ............................G GTGAGGGAGTGTTATTCCGCTACGGGGACAGT 353366 29 93.1 33 .......T....................G GTGTTCCAGGCGAAGAATTTATCTTTGAGGGAC 353304 29 96.6 32 ............................T GCACCGGGCAACCCGTCGATGTGAACATATTG 353243 29 100.0 32 ............................. ACAGCACCCACCGCGCTTATGAACGTGTCGTG 353182 29 96.6 32 ............................G AAGACTGTGATCATACCTTCGTTGTCAATATC 353121 29 100.0 32 ............................. ATGCTCAACATACTTTTGGCCCGGCCTGAAAA 353060 29 100.0 32 ............................. TCTCACCACCGCATCACTCGGCGGCACGCCTG 352999 29 96.6 32 ............................G GCTGACCGGACTTTTGAAAATCGGGAGGACGC 352938 29 96.6 32 ............................G TCCGATGTGGGGCATGAGCACCCGATCAGCGA 352877 29 100.0 32 ............................. ACGCCACAGGCCTGCACCGTCCAAGACGTGCC 352816 29 96.6 32 ............................G GGTGAAAGGTATGCAAGTGCAAAGGAGTTTGA 352755 29 100.0 32 ............................. TCGCTGGCCAGGGTTTTTGCATTTCGCCGTAA 352694 29 100.0 32 ............................. TTCACAGCCCGCAGATCCCCGGCACGCATCCT 352633 29 100.0 32 ............................. AGGAAGTTTACGAACTGCGTGATCTCAAGTTG 352572 29 96.6 34 ............................A ATGAGACAACGGAGTACCCCATTTAATACGGTGA 352509 29 100.0 32 ............................. TGCGTACACGCCCCTGGTCGGAAACCTCATAT 352448 29 100.0 32 ............................. GGTGCGCAAGATCAACTAAGCCCTGGTAGCCG 352387 29 100.0 32 ............................. GGACAGTCAGCCGGGGCGAAGTAAAACACCTC 352326 29 96.6 32 ............................G TGGCGGCTACGAATACACCGAATTTTCCGAGC 352265 29 100.0 32 ............................. ACGCCTCGGATCGCATCGGCTATGCCATTCAA 352204 29 96.6 32 ............................G CTGGCTGTCATTGAGCTGTTCTCTGACGAGTT 352143 29 100.0 32 ............................. ACTTCTTGTACACGGTGATCCACCTGATCGCG 352082 29 96.6 32 ............................G GCTGATGTAGAGGTCGCTATCAAGACGGTGCA 352021 29 96.6 32 ............................T GGGTCTTTTCCGGTTCCCTTAGCCCCGCGTTT 351960 29 100.0 32 ............................. CGTCAACGCTTTTAGATTATGAGAACACGCTC 351899 29 100.0 32 ............................. CTCCATCTATCTCGGCACGCACTCTGCGAGAC 351838 29 100.0 32 ............................. CAACAAACTTCTTCCCTGCAGCCACCGGCACA 351777 29 96.6 32 ............................G CAACAAAATCGGCCAATACGAGCTTGGATCAT 351716 29 96.6 32 ............................G CAGCTGGGATAGGTTGCGTAGCTGTTCAAAAA 351655 29 96.6 32 ............................T CCATCAACGCAGAACGCAAAGACGCAGCCTTA 351594 29 93.1 32 ....................A.......G CGTCAAGAGTCCCAGGGAAAGCAATGAGTAGG 351533 29 96.6 32 ............................G CCATCGACGCTTCATGGAGAACCCACGTCAAA 351472 29 100.0 32 ............................. CCCGGGGTTTGGCAGCGGGGGATATAAATGCT 351411 29 96.6 32 ............................G TCTCTGTTCGTCTTCATCGGGGCTGCTATCTG 351350 29 96.6 32 ............................G TGGATCACCGAGCCGGGCGTAATCACAGCACT 351289 29 100.0 32 ............................. TTCACAGCTCTGAGATCCCCGGAGCGCATCCT 351228 29 96.6 32 ............................G TGCCCCTCGCCGTTGTCCCCAATGAACCACGG 351167 29 100.0 32 ............................. ACACTGGGTGGAGATCTAGTCGGTATAGACGT 351106 29 96.6 32 ............................G TAGGCGGACGGGCGTATATTTCATGTTGTCAG 351045 29 96.6 32 ............................G TTGTCGCCACTGCGAACACCCTTGCGGACGCC 350984 29 100.0 32 ............................. AAAGCTTGCCCCCATGCTTGCGGTATATGCCT 350923 29 93.1 32 ............T...............G CAACGACGCCTAAGCAGAATCATGTGCCCCGG 350862 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================== ================== 81 29 98.1 32 GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Left flank : AGAATTTTGGGCCGATATTGTCCAGCTTTGGGATGGAAACGATCGACGCGTTTCCGGAGGCACGAATTATGAGGATCCTGTCCATTTTCCGGAGTCGGAAAAATGATTACCGTTATATTATCTTCACCTCCCGAAAAATTACGCGGGCATCTAACCCGCTGGCTTATCGAGATAAGCCCTGGTGTATTTGTAGGTCGCCCTACAGCCAGAGTCCGAGACGAGATCTGGGACATGATCGTATCTACTCTTACCAATGGACGAGCAGTCATGACATTTCCGACTCGCGACAATGAACAAGGTTTTGACATCCGCGTACACCGCAGTCAATGGGAGAAGACTGACTTCGAAGGTGTCACCCTAATGCGACATCCTATAACGACAGCAAAAGGTTCGATGAAAGCCGGGTGGTCGACAGCTTCACAGCATCGTGCTGCTCGTCGACGCAAAGCAAAATGATATAAAATGATGAAAGGATCGAATATTTTCCCTGGTTATTTAGT # Right flank : ACAACGCCCCATCGCCGATGGTCAGTCGTCGGAGGGGCGACTCTGAGAGAGCCAGATAGCGTGCTCAAAGTACGTTAGATCCTCTCCCAAGCCCGTGGCGCCGTGGGCCTCGACAACGAGTTGTCTGACTGTCTGCTCATTCACGCTCTCCAGGCCAGCAGTCGACAGCGCCTCAGTGATGAACCGCTTGATCATGACATCAACCTTCACCCCAGGGATTCCCAACAGCATGGTGAAGTACTCGAAGGTTACATAGCCCAACCCCTGCACACCGGTGTAGATTCGCTTGGCGGTGACAGAATCCAGACCGTGGAAATCATCGGCACTGTTCACCCCGATAGCCACGTACCCCGCAGCCGCCTCAAGCACTGCCCCCGCTTTCAACCGACGCCCGGTTTTTCCCTGCCCCATGATCTGCGCTACGCGTTCAGTGCCCAATTCGACCAGTGCCGACAGGTCATTGATCACGCCCGGGTTCGCGGAACGGAAGGCCTGCACGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCTCAGGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //