Array 1 1570-1144 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUYQ01000086.1 Bacillus thuringiensis strain AFS076772 AFS076772_106_F12_Contig86_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1569 30 100.0 37 .............................. TCATTAGCGGCATCGCCTATTTTAGCTTTAACTTCAG 1502 30 100.0 36 .............................. ACTAATGGATGTTCAGCTTCTTGCCATCCTAATTGA 1436 30 100.0 36 .............................. AGTAGTATCTTACCTGAAAAGCGTGTCCTGCTATCG 1370 30 100.0 37 .............................. ACGAAATGAGCTGTTACTACTGGCGCTATGACGCCTT 1303 30 100.0 35 .............................. ATAAATGTTCGGTACGGCTGTAAAGCTACAGGATT 1238 30 100.0 35 .............................. TGATAACCAAAAAGCACGCTGTCCATTAAATTGGA 1173 30 93.3 0 .................AC........... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.0 36 GTTGAACAGAAACATAAGATGTATTTAAAC # Left flank : GAAATTCTTTTATTCCATTTAATCTAAAGGAGAAAAAATAATGAAAAATCAAATGAATGCTAATTATGCGTTTGTTTTTTATGATGTAAATGAGAAACGAGTGACGAAAGTTTTTAAAATCTGTAAAAAATATTTAAATCATTATCAAAAATCTACTTTTAGGGGGGAGATTACTCCCTCAAATCTATTAAAAATGGAAAAGGAAATTAGGAATATTATAAACGAGGGGGAAGACTTCGTTACTATTATCAAAATGCTAAATGAATATAGCTTTGATGAGATTGAAATAGGGTATAGAAATAATAACGATCTCCTATTTTTGTGAATTTACCAAGTGAAATGATAGTGGGAATCTAATAAACTTTGTTAAGTCAAGATTTATACTATTTCTTTTTGAGAATTTTATTTTTTTATGAACTGCTGGTAAAAAAATCACTAAACTTATATGCAGTATAGTATTATATAAAATATGAAGGTAATAAAAAGTTGATTTAATCGGT # Right flank : TTTTGGTCTATTGATTTTACCGTAAGTACGTAACTTGTTGAACAAAAGTCTTAAATTAGAATTGATTTCGAGTAACTCAATAGATAAGCTAAAGGCAAATTTTTAAAGAGAGAAGTTTTTTCATAGAAAGGGGAATTAAGAGTAGGAAAATCTATGCTCCTGCAAAGTATTTTGAAACAGGAACGAAGTTGATTTCGTTTTAATAATAATCTTGTCTCTTTTACTTACTATCGTGGATAAATCTGCATGACATGTACTATAGTTGATGTTATAATATGTGTAGAAGTATTATAAAGATAGTTTTTGCATAAACTAATAAAGACGAAGTGCTGGTAACACTTCGCCTTATGTAACTGCTACCGCAAGGTGGATGGTTGCTAAAAAAGAGTTTATTTTTTCTTAGAATCACCCTTCAAACGCTTGCCGGCATTGTGGGTGGTTCTTTTCGTTTTTCGTCGCTTTTTTTGTATTTGCTTCCAAGACGTTGATAGGTATTTACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGAAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 11297-10745 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUYQ01000086.1 Bacillus thuringiensis strain AFS076772 AFS076772_106_F12_Contig86_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 11296 30 93.3 36 ...........G....T............. ATTTCATACGTTACTTTAGGCATACAAGCTTTTAGT 11230 30 93.3 33 .......C.A.................... GAAACTAAGCCAGAGACTAAACCAGAGACTAAG 11167 30 93.3 35 .......C.A.................... TATAATGTGCCGATCGGAATTTTAGCGCCTTTGGA 11102 30 96.7 35 ................T............. AAGAAAAACAAATCACTAGAGGCAGATGTTATTAC 11037 30 100.0 36 .............................. AATGTATACGGGGAAGTTTTAGGGTGTGATGTATTA 10971 30 100.0 35 .............................. ATTAACGCATTCATTAATGATGACCACCTCTGAAT 10906 30 100.0 36 .............................. TTGTAGGTATTATGGAAGGTAATCTCTGTAGGATTC 10840 30 100.0 36 .............................. TACAAATCTTATCATAACGTATGATTTAAAGAATTT 10774 30 80.0 0 A.....T.GA.............A.....A | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 95.2 35 GTTGAACAATAACATAAGATGTATTTAAAC # Left flank : ACAATAATATATCCATCATAAACTAGTAGCTGAATGGATAAACCAAAGGCACATCCCTTAATGGGATGTGCCTTTTTTTCGTAGAAAGGAGAAGTAGAAATGGATAAAAAGAAAAAACAACGTGTAAGATGTGCAATTTTTATAGGGGTTGTCGTAATGATTGTATCTTTGTATATTGGAAGTGAATTGCAGGATCGGAATGGGAGAAGTTATGCTCCTGCAAAGTATTTCGAGACTGGAACAAAATTAGTTTCATTTTAATTTTTTACATATTTTCATCGAACAATATGGGTTAATAAGGAATTTGACGAACGTTTTACCAGATTATTTAACAACCTAATGTATTAGTGATAACATGTAAATGTAGATAAAGTAAGGAATTTCTGTATGAATTCTAAGTTAATGAGGTTTATATCAATTAGTTGGTAAAAAACTTATAAACCCCCGATTTCTATAGTATAATAGTGGATGCAGGAAATAAAGAGCCAGTATTACTTGGT # Right flank : ACTAAAAAATGTTATTGGTTTAGGAAGTAATCTGGTTAAATAATAAAGTAGAAAGTATTATAATTTCGAAATAAAAAGCACACTCTTGATTTGAACTACCCCCTATAAAATAGGCAGTTTAATAAGAGTTGTGCTTTTTTATTTAAAACGGAAATATAAGGTGGGGAGGATAGAGTGCTGAATGAGCTCAGTATAATTTAATTGTTTACATTTTTGCAACACAAATAAATCGTAATATTAATTATAATATGATATCCTGTTTTTAGGAGGTGCTAAAATTTGAATTTTGAGTTAATAATTACAACTTTATTGAAAGAAGATCTTCATTATGAGGATAGTTTGCAAATAATTGGTAGTTTCATCAACAAAGCGATGCTTCAAAGTGAAAAATTAAAAGCCTTGCATGAAAGAAAAGGTTATAAAAATTATGTTTTTAGCAATTTTTATCCATTTGAAAGAGATAAAATATACAAAAGTGGCCGAGTGTATGTATTTCGATT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAC # Alternate repeat : GTTGAACCAAAACATAAGATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //