Array 1 362672-362504 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013988.1 Aerococcus urinaeequi strain USDA-ARS-USMARC-56713 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 362671 36 100.0 30 .................................... ACAACGCATTACAAATGGAATTCACTACAT 362605 36 100.0 30 .................................... AGCAAGCTGAGGAGGAAGCCCGTCATTCTA 362539 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTCGTGATCTCCAAAAATTGTCGCCCCTCAAAC # Left flank : CGTCTATGAAAATATTGAACTCTGTTTTACGCTCGCACACAGGATTATTGAGATTATATTTTGATGCTGTTTATCAAGAAAGACGATATGGACGTTCTGATTTTGATAAGGAAACTGGAGAAATAAAATAAAACTTTTTTCGTATAAGACAATAAAGTAAAACTCTTATAGTTTTTTGCTAGGGTAAACGAGTAGTAAAAAATGTTTGAATTTAGGAGGCGAATATCATGAAAGGTAAAAGAAAATATATATATTTAATACTTTTGATATTGTATTCTATTGCAAATAGAGTAATACCATTAGAATATCAATATTTAGTTTATATTTTTATGGTATTTATGATTTTGTATGTTTTTTTCAGTGATATTATTTTTGATTGGTTGAAAAATAAAAATAATAAAAAACGTTCATAATTTTAAATTGGATATTTAAATTAATGATTTATTTGTTCTTTGCCCCCCTGACTGAAAAGTCTAAGGGGGCTTTTCTTTTGGTTTGAG # Right flank : CTCAAAATAAAAAAGCCCCCTTCGACTTTCGTCAGGGGACTTTTATCACTAAAAATTATTATTTTTTAAAAAATTTTTTATAACCCACTTTTTAGCAAGATAAGCGATTAGTAATAATATAACGCCAATGAAATTTAAATAAATACCTAGATTATCAGGTAATATCAACAACAATAATGAACTTAAAGTCATTATTGTTGTGTCAAATAACAACAATAACACTGATTGTTTTTTATATGCCTCTTCACAAAAAAGCACAAAAGCTAAAAATAACAACCCTATCGCTCCTAAAGAAATTAATATATATGGGGAAGTCATCATTAAAGTTGCACTAATCCATATACCGTAACCTAAAATATTTTTATTGGATATATCCATAATCACTCAACTCTCTTAAAATGTTCCTGATACAATATTTGGAAAAGCACCATTCATTTCTGCACCAATATATACACCTTGCCCATTAGCACTCGCTTGTAATATTTGATACACAAAATCAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTGATCTCCAAAAATTGTCGCCCCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 741241-743827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013988.1 Aerococcus urinaeequi strain USDA-ARS-USMARC-56713 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 741241 24 100.0 37 ........................ TGCTTTATGATTTTGTAAATCTTCAATCAACATGTAG 741302 24 100.0 37 ........................ CGACCAATAGCACCACCTGAAGCCAATGCTGTTGTAG 741363 24 100.0 37 ........................ CGGTCAAATTGACGTTGCTATGCGTGATAACGAGTAG 741424 24 100.0 37 ........................ TTGGGGAGTGGAATTCAAGCCTCGCATGGTATTGTAG 741485 24 100.0 37 ........................ TGAAACAATGGAATTCTTTAGATAGTACATTACGTAG 741546 24 100.0 37 ........................ TGGGAAAGATTGGTCAAAAGAAGCGATTGCTGCGTAG 741607 24 100.0 37 ........................ TGTAATGGTGGGGTGATTGAATGGTTTGGGTAAGTAG 741668 24 100.0 37 ........................ CCGTACATTGCAAAAGGATAACTCGAATTTATAGTAG 741729 24 100.0 37 ........................ CAAGCAATTTTGAAACAAAACAAGGTGAAACAAGTAG 741790 24 100.0 37 ........................ TCGCATCAAGTGCTTCATAGTTACCCATCATACGTAG 741851 24 100.0 37 ........................ TATACAGTGTTTGACCTACTGAAATCTTATCCTGTAG 741912 24 100.0 37 ........................ TAGCAGGAAGCTGGGTCAGGTCTTCGGGGTCTGGTAG 741973 24 100.0 37 ........................ TTTACACACTACACTTATGTGGCGGAAGCTGGAGTAG 742034 24 100.0 37 ........................ CCAATGCTAGACCAGCCACCAACTGATGAAGCAGTAG 742095 24 100.0 37 ........................ TCTAGCTAAGTAGTCGTAATAGCTAGGAGCGTTGTAG 742156 24 100.0 37 ........................ TGTCAGTGAATCGTTAAGGTATGATCCACCTTTGTAG 742217 24 100.0 37 ........................ TATTGATAACGTTGATTTAAGTGAATTGTTAAAGTAG 742278 24 100.0 37 ........................ CAATACAAGTGGAAACAGTAACGATTCATCAAAGTAG 742339 24 100.0 37 ........................ CTGATCTTTGGAAGTAAGCAAGAAAAGTATACAGTAG 742400 24 100.0 37 ........................ CTAACTACCTAGCTAAATCAACTTATGAACGTGGTAG 742461 24 95.8 37 ..................G..... CATTGCCGTCCGCAGCCGATGATAATTCAAAAGGTAG 742522 24 100.0 37 ........................ CAAGCGGGTCTTTGTTATTCAGACAAGGGCATCGTAG 742583 24 100.0 37 ........................ CAAGTATGAGTTCGAGCCGAAGTATGACAAACAGTAG 742644 24 100.0 37 ........................ TGATATTGAATAACTTTAGTTCACTTAAAATAGGTAG 742705 24 100.0 37 ........................ CATCATCGTTTGTAGGAACATCATCTTCAATTTGTAG 742766 24 100.0 37 ........................ TGTCCAAGAAGAATTTGAAATCAAGGGGATGTTGTAG 742827 24 100.0 37 ........................ CAAGGTAGGTCAAGGGCGTGACACGATTCACTTGTAG 742888 24 100.0 37 ........................ CCGTTTTGACTGGTTAGCAAAGGAACAAGATTTGTAG 742949 24 100.0 37 ........................ TTTGACGGTATCAATTTTTATGACTATTTAAAAGTAG 743010 24 100.0 37 ........................ CCAAAGAATAATGTATTAAGCGAATTTGAACAAGTAG 743071 24 100.0 37 ........................ TGCGACGGTCCCAGAAGCGGAAGCAGTCACAGCGTAG 743132 24 100.0 37 ........................ CGGTCTAATTACGCACACAGTTAGTGGAGTTTAGTAG 743193 24 100.0 37 ........................ TGATTTACCGTCCGAACGGTTCGAAATAGATATGTAG 743254 24 100.0 37 ........................ CCAGCCAGAAAGCACAGAGCTTACTACGGAAAAGTAG 743315 24 100.0 37 ........................ CAACACAAATGAATTTGCATTACAAATTGATACGTAG 743376 24 100.0 37 ........................ TGGTGCAACAGGTAAAGACTCACTAACTCCAGAGTAG 743437 24 100.0 37 ........................ TGATCAACGTAAAATACTACATTATCTTCTTTAGTAG 743498 24 100.0 37 ........................ CGATGAAACTTGTTAACCACATAACGTTAAAGTGTAG G [743510] 743560 24 100.0 37 ........................ CGTGGCTTGGGACTTTGGAACGAACTGGTCAAAGTAG 743621 24 100.0 37 ........................ CAAACGATACGGTTTACAACTTGAAGCGATATAGTAG 743682 24 100.0 37 ........................ TAAGTTAGGTGATACTTTTGTTTCGTAAGTTACGTAG 743743 23 95.8 37 ..................-..... CTAGCCACCGATACCAATTGCAATGTTTGCTACGTAG 743803 24 79.2 0 ..................A.GGGT | C [743804] ========== ====== ====== ====== ======================== ===================================== ================== 43 24 99.3 37 TCCCCGCACCAGCGGGGGTGATCC # Left flank : ACGAAGAAAATGTACAAATTACCTTAGATTTCATCGCTATTGATATCACTGTTATGAACAACATGATTAGAGAGATTTCAGCAATTAAGACTGTGAATGATGAATTGACAGAATTCATGGTTAAGATTGAAAATGAATCCAATGATTCTTCTGAATTAAAATTATATTTAACCGAATTTGTCTCATTTGTAGAAGATTTACCAATCGTAGGATATGACTTTGGATTAGAATTTCAAGCATTGAATACCCTTTTAAGTAAACAAGGCCTGAACTTACTACCTAATAGTGTTATTGATTTAGTTAGATTAGTTAAGAAAGAAAATCCTTTTTTGCAGAATTATAAGATAATGACGGTTATGGAATCGTTTGGAATTGAGAATAATGAAAGTCAAAGTTTTTTACTTAATGCTAGAATGATTAAAGTATTAGCGAATAAACTGAATAAATTTCGTCAAATTATCAGTCGTGGTTAACGGTATCATAGGGATCTTTTAGTGTAG # Right flank : TCTAACTGGTTATTTTGATAGAATAAAATTATAAGTATTTGACATCACAGAGTGTAAAAAAGATTTTTTGAATTAATAGTTGTAATTAACTTGAGTGCTAATTAGTGAATGCTCCAATATTTTGTGATTTTATTAATAAGCTTATTGATAGATGTGAGTGGCTATCCAAAAGCTGCATTCGTCAGTTAACTTATATCTTCAAAATATCTAATGAAATGATTGGTTTAAGAGGAGCAACAGCAGACAAATAATAAGAAGAAATAGAGAAAATAGGTGGTGGAAAAGTGTTCTATGGAGAAAAACTTCAATTAATTAGAAAGTTGCACAGTTTATCTCGAAAAGACGTAGGTAGTTTTATAGAGGTTTCTGAACAGACTATTTGGCAATTCGAAATGAGTAGAACTGCACCAACGTTTGAGCATATTTCTGAATTAAGTAATTTTTTGATGTAAGACACATTACTTTTATACACCGAACATAATTAACATAACTTTCTCAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACCAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.00,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //