Array 1 57716-57503 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV812511.1 Corynebacterium sp. HMSC056E09 Scaffold166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57715 29 100.0 32 ............................. CAAAAGGCCTCTAGTTCTTTAAGGTTTGCGGT 57654 29 100.0 32 ............................. CGAGGACACCCAAGCGCGTGACAGGTCGTCAA 57593 29 100.0 32 ............................. TCTCGGGTCACTGACTTCGGGTCAAGCAACAT 57532 29 86.2 0 ...T..........T.........A..A. | C [57506] ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTACGCCCCACGCACGTGGGGATAGCTCG # Left flank : TGAGCCCTCTTCATCCTCGGCCTCAGGCCACAGGTCGATCGTGCTCCCCGGGTGAGCGGGGATGAGCCCAAACTCGCCGCCCCCGTAAGAGCCGATCTTCCGTGCTCCCCGCGTGAGCGGGGATGAGCCGCAAAGTCCAGAGCATTCGGCGCGCCACCAATAGTGCTCCCCGCGTGAGCGGGGATGAGCCGCGAAGAACTGCACGGCGGCGTTGATGTAGCAGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACTCGGGGGCGTCTGCGAGGTACACGGGTAACGTGCTCCCCGCGTGAGCGGGGATGAGCCGCTGCGCAGCACGTAGGGGTTACTACATTTGCGGTGCTCCCCGCGTGTGCGGGGATGAGCCCAACTAGGCCCGCGCCCTCACACCACTCGCTAAGTGCTCCCCACCTGACCGCGGAAGCGCTAGGACGACTACAGTTTGCTATAGTCGGATCTACTGTCGGGACGGCGTCCGTGCAGTTGTCGGAGA # Right flank : GTAGCGCTCACCACGTAAACAGGTATGAGTTTGTATAGACCGTTGGAAGCGTTGTGTCCAACGTGGAGTCGAGCGAGTTTCCCAGTCGTTGTTGTTTTCGATATGGCGTGCACTCCGTTGCAGAATTTCGCGCTTTTCTTCGCTGGAGTTTCAACACTGTCCTAATTTCGTAGTTTTTCTTTTCATGAGAAAACTAGGTCTTCTCCTTTCGCAGTACGCTAGGGTCAGTATCTGTGATTCAGGACGTCGACCCGCTCATCCATTCCCTGTACCAGGTCTTTGATCTCATCGGTGTGGTACTCAACGGCATTATCGGTGGCACGATTGCACGCCGTAGGGAATTCGACATTATTGGCTTCGTCTTTCTGGCGCTCTTTTCGGCGCTGGCTGGCGGCATGATCCGTGACATGCTGATCGCCAGCGGTCCGGCTGCGGCTATCTCTGATCCGCTGTATCTCACGCTGGCGTGTGTGGGCGCGCTCATTGCTTTCTTGACGGAC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGCCCCACGCACGTGGGGATAGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 62082-57780 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV812511.1 Corynebacterium sp. HMSC056E09 Scaffold166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62081 29 100.0 32 ............................. CAGCACCGGCGTGTAGGACATGCCGCGGGCGA 62020 29 100.0 32 ............................. ATGACGGCATTCTGGTTAAGGCCGGTGACCGT 61959 29 96.6 32 ............................G CTCCTGAGACGTAGCAGCATCAGCCGCCGCCG 61898 29 100.0 32 ............................. CTCAACACCTGGGAACCCGGGGGCAAGGACGT 61837 29 100.0 32 ............................. AGCCAGGGGCACACCAAGCCCTACTGCCTACC 61776 29 100.0 32 ............................. TGGATTTTTTGGCCTGCGCGCCCCGGGGTGTA 61715 29 100.0 32 ............................. GCTCGGCCAGTACAAGCTGAGTGACGTTGGGG 61654 29 96.6 32 ............................G ATGGCTACAGCCCCACACGCATCGCTGAGTGC 61593 29 100.0 32 ............................. CAGGGTGTTTTGCATGTCTCTTTCGGTGAGGT 61532 29 100.0 32 ............................. TTCGGTGTAGTCGTCGTGGGGCTCGCCGTAGC 61471 29 96.6 32 ............................G ACCGCACGTGAGATTGAATCCGAATACCAAGC 61410 29 96.6 32 ............................G CTGATAGGGGGCGCGACGTCGAGTCCCGACTC 61349 29 100.0 32 ............................. CCAACCACCGGGCGAGCATTCGGAATGTAGGT 61288 29 100.0 32 ............................. CAATCAACCCGATGGTGGTATCGAAGACCTCC 61227 29 100.0 32 ............................. CATAAGAACGAGAACCATAAGACTAGTAAAGA 61166 29 96.6 32 ............................G ACTTTCAAAAGTCGTTTTCTAGCTCGTCTGGG 61105 29 96.6 32 ............................G TTCGGGGAGTTCGTCGACTTTCTGCGTAGCAA 61044 29 100.0 32 ............................. GTCACCGGGCGCATCCAGCATTTTGAATGGCA 60983 29 96.6 32 ............................G CACTCAGGGCAGCAATGTGTAGTAGTCATTTA 60922 29 100.0 32 ............................. ATCCACCGGATTACCCTCGAATGCGTTTTTAT 60861 29 100.0 32 ............................. GGAGACCTCACTGTCTTCTATGACGAACGTGA 60800 29 100.0 32 ............................. CGGCTGGCGAAAAGTTCACCTTCGAGCGTCGC 60739 29 100.0 32 ............................. GCGCTCATGTGCCAGTCGCAAATGCAGATGGA 60678 29 100.0 32 ............................. GCCCACATGGAATGCAGCCCCACAACGGCACC 60617 29 96.6 32 ............................G TCCCGCGATACCCCGGCGCAACACCATAGTTT 60556 29 96.6 32 ............................G GAAGCTCAACGGCATCCATAAGGAGTTCAAGG 60495 29 96.6 32 ............................G GGTGGGGCCGTAGCCTCGGCTTCTGCGGCCTG 60434 29 96.6 32 ............................G CAATCACCGCAGAGCTGAAAGATGCTCGCTCT 60373 29 96.6 32 ............................G GCACGGGCAAACTTAACGACGAATTCGGGGTC 60312 29 96.6 32 ............................T GGTCAACCCTCACTAGCGACGGCGCAAACATG 60251 29 96.6 32 ............................G GGCGAACCGGGCAGTATGTGGCTAACGATCGA 60190 29 96.6 32 ............................G TCATACGGATGAGGGAAGAGCTTATCGCCTGG 60129 29 96.6 32 ............................G GTAGCTAACTTCTGGCAGATCACTAATATCCG 60068 29 100.0 32 ............................. GCCTCAGCCTCCCCAGCGCTCAAATCAAACTG 60007 29 96.6 32 ............................G ACGTCGTTGATTTTTGCCGCGGTGGCTTTGGC 59946 29 100.0 32 ............................. CAATCAGCAACAACCTGCAGGCCAAAGCGCAG 59885 29 100.0 32 ............................. CGATTCAGCCGGAACCTATGTGGGACGTCTTC 59824 29 100.0 32 ............................. ATCCGCATCTCGGGAGAAGTCACCCTGCCGGA 59763 29 96.6 32 ............................G GGCTGACCCGGTGCGTCGTAGTCGTACACGCG 59702 29 100.0 32 ............................. TGCGCGGTCATGTTCTGAATATCGCCCAGGTC 59641 29 93.1 32 ..............G.............G TCCTACCACCCGCCCCAAAGACAGACGACAGC 59580 29 96.6 32 ............................G CCATCATCCTCCGCGACAAACTCACCCGATAC 59519 29 100.0 32 ............................. CACAAGGAGGTAAGCGCTAATGGCACGCCACT 59458 29 100.0 32 ............................. TATCCAGTGTCGTTTGAGGACGTATTCGACGT 59397 29 100.0 32 ............................. CCACCACACCACCAACGACTTCAAGGTTGTAA 59336 29 100.0 32 ............................. ACGGCTTTACCGCTACTTCCGCCCCCGGAGAC 59275 29 100.0 32 ............................. CACAGCAGGGGAGCAGTCGTGAGATGGGAGAG 59214 29 100.0 32 ............................. GCAGTAGAGCAAGTCAACGCCCATACTCGGGC 59153 29 100.0 32 ............................. ACCGCCATCTTCCGCTGCTCCGCCGGTTCTAC 59092 29 96.6 33 ............................A GGACGGGGCGGGCCGCTTCATTGACACGGTTGG 59030 29 100.0 32 ............................. AAGACACTCCCTGGGAACTGGGATGCGCTGCC 58969 29 96.6 32 ............................G TGGGTTCCCTACATGCGGACGGCTAATGGCTC 58908 29 100.0 32 ............................. CATTAGCCTCCAGATACGCCTGGGCATAAGCA 58847 29 96.6 32 ............................G AGCAGGTCGTATGCCTGCGTGCCGACAAGCAG 58786 29 96.6 32 ............................G GGTGGGCTGTACGCGGAATCGCCAAGAAAGAC 58725 29 96.6 32 ............................G GCCTGCGCGCTATCCCCGAGGACCGGCTCATG 58664 29 100.0 32 ............................. AGTCCACCAGTGCCCGCCGTCATGGCTACACC 58603 29 96.6 32 ............................G GGTGAGCTACTCGGGTTGCAGCGTTCCAAGGT 58542 29 100.0 32 ............................. GGCGGCGAGGGCAAGAAGGGCCGTATTTTCGT 58481 29 100.0 32 ............................. GGCACCCGCTTCAACGTCATCGACATCGACGA 58420 29 96.6 32 ............................G ATGACGGGCGAAACAGTGTTGAGGGCTTCGTA 58359 29 100.0 32 ............................. TTAGCAACCTCAGCATTCAGCTGACCAACAGA 58298 29 96.6 32 ............................T CCACCTGGACTATCGAGCGCGCCAAGAAGGCT 58237 29 100.0 33 ............................. TCTTCATCCTCGGCCTCAGGCCACAGGTCGATC 58175 29 96.6 32 ..........G.................. AAACTCGCCGCCCCCGTAAGAGCCGATCTTCC 58114 29 96.6 32 ............................G CAAAGTCCAGAGCATTCGGCGCGCCACCAATA 58053 29 96.6 32 ............................G CGAAGAACTGCACGGCGGCGTTGATGTAGCAG 57992 29 100.0 33 ............................. CACTCGGGGGCGTCTGCGAGGTACACGGGTAAC 57930 29 96.6 32 ............................G CTGCGCAGCACGTAGGGGTTACTACATTTGCG 57869 29 96.6 32 ..............T.............. AACTAGGCCCGCGCCCTCACACCACTCGCTAA 57808 29 72.4 0 .........A.C...C..C...A.C..TA | ========== ====== ====== ====== ============================= ================================= ================== 71 29 98.0 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : AACTCGAAGTCATTGCTTCAGGAGTGAATTGGGCCGAAGAGGAGACACTTTCGTGATCGTTCTTGTCGTAACTGCATGCCCCGCTGGGCTTCGGGGTGACTTATCAAAATGGCTGATTGAACTAACGCCGGGTGTCTTTGTCGGCCGCCCTTCCGCACGAATTCGTGACTTGTTGTGGGAGCGAACCGTTGAACTGTGTAAGGACGGTAGAGCATTACTGGTCTATTCGGCAGCAAACGAACAGGGTTTAGAATTCCGGACTCACCGGCATCATTGGCAACCACAAGACTTTGATGGTGTCACGCTCATGGTTCGTCCTGCTCCTGGAAGCAAGAAAGTTCAAAACAGGACTGGTTGGTCACAAGCCCGACGGATTCGTTCGGCATACCAGAAACAGAAACGAAAATAGCTGAGGAACTCTAGACAGGTTCTGTGTCTCTTCCGAGAAGAAGCCGTATGTAAACTGAGGGTTCGGCTCCTTTATACGCTGCTCAGCAAGT # Right flank : GGACGACTACAGTTTGCTATAGTCGGATCTACTGTCGGGACGGCGTCCGTGCAGTTGTCGGAGAGTACGCCCCACGCACGTGGGGATAGCTCGCAAAAGGCCTCTAGTTCTTTAAGGTTTGCGGTGTACGCCCCACGCACGTGGGGATAGCTCGCGAGGACACCCAAGCGCGTGACAGGTCGTCAAGTACGCCCCACGCACGTGGGGATAGCTCGTCTCGGGTCACTGACTTCGGGTCAAGCAACATGTATGCCCCACGCATGTGGGGATAACCTAGGTAGCGCTCACCACGTAAACAGGTATGAGTTTGTATAGACCGTTGGAAGCGTTGTGTCCAACGTGGAGTCGAGCGAGTTTCCCAGTCGTTGTTGTTTTCGATATGGCGTGCACTCCGTTGCAGAATTTCGCGCTTTTCTTCGCTGGAGTTTCAACACTGTCCTAATTTCGTAGTTTTTCTTTTCATGAGAAAACTAGGTCTTCTCCTTTCGCAGTACGCTAGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //