Array 1 27949-27584 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZUF01000036.1 Rheinheimera sp. YQF-1 Scaffold36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 27948 29 93.5 38 --............................. GGCTTGTACGTGGTAGAAGCCGCACCTAGCAACACAGT 27881 31 100.0 35 ............................... ACTAGCTTTGAATTAGATGATCCTGACTATAAGGT 27815 31 100.0 35 ............................... GACACTCCGCACATCGAAGTTGATTTTCATTGTGT 27749 31 100.0 38 ............................... GGCTTGTACGTGGTAGAAGCCGCACCTAGCAACACAGT 27680 31 100.0 35 ............................... ACTAGCTTTGAATTAGATGATCCTGACTATAAGGT 27614 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 6 31 98.9 36 CGCGTCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : GCGCCGCCGCAAAAGTAGCCGTAACCGCTTGCTGTTGTTACCAACAATGCAAAACTGATCCACTCCAACAATTGAAACTAGCGCCGATAAAAGTGAAGCAGATGGAGTCGAAGGTAGCGTCCCGCAGTGGGCTAGATAGCGGGGAGGGGTTGGCTACTATTGTTCAAAAGCCAGAGTCGCTATGAGCTTTTAGTATGTAAGAGACCAAGCTGGGTAAACCTTATTCACCATGTAAAAAAACCGCACAAATGGCGGTTTTTAATATCGAACACAGTGGCTATAACTTATTCAGCCAGGCTGCCCCATAAGTCGTATTCGTCCGCTTCTTCAACAACTACATCCACCAGATCGCCTGGTTTTAATGAGGTTTCGCCGTTTAAGTAGACTGCGCCGTCAATTTCAGGAGCGTCAGCGAAGCTGCGGCCAATGGCGCCTTCATCGTCCACTTCGTCAATTAACACTTTAATAGTACGGCCAATTTTGCTTTGTAAACGGGCGGC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGTCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 62744-62370 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZUF01000004.1 Rheinheimera sp. YQF-1 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 62743 35 100.0 34 ................................... AAACGCTACGGCACCTGCTTTTGGTTCAAAACCT 62674 35 100.0 33 ................................... TCTGATTTGGACATGCATTCACTCCCCGGCCCT 62606 35 100.0 33 ................................... AGCATAGCTTTGATAGAACGTGAGTTTGTTTTG 62538 35 100.0 32 ................................... CTAAGTGCCTTCGTAGGCGGAAAAGTCTGAGA 62471 35 100.0 32 ................................... TATTGTATGTCCTTCTGAAATCTTCGAGAGCA 62404 35 82.9 0 ......................C.A...C.G.CG. | ========== ====== ====== ====== =================================== ================================== ================== 6 35 97.1 33 GTTTAACCACTGCCCGGTTATGACGGGATTAAGAC # Left flank : CGGGGTCTAACCAGTCAACTAAGGTGGAATCACAAGGCATACGATCAAGTTCTATCCAGTTCTGTTCGCCGCTGTAGCGGCTGACTAACCAAAACGCCATTGTCAGGCTCCTTCTGTGATTAACCATCGAACTTAAAACCAACTTATGGTGGCTTGGCATTATGGGCATGCAAAGCGCGCCTGACGCCCAGACAAGTTTGTTTGTTATCTTCGTTATCCAGGCTGTTTTTGTTTTAGCTGCTTTAAAAAGCACTCAGGCTGAAGTTGCAAAAAGCGTATGCAAACTGGCGTGGTAATAAGGGCGTTTTTTAGGGTAAAACGGCTGTTTTTGGCCATTTTTGGGCTTTGGCGCAGACCGTTGTTTTTATTAGCAATAATCACGTCTTTTTGCGAGAGTTTGTGGTTTATGGACGGTTTTGTTTACTTATTAGGGAATTTGGTAGGTTCGCACCGACTTTGGGGTCTGCAGCCCTTGACTGGCGCGGCCTCCAGAAGCTAGA # Right flank : ATAGAAAAAAGGCCAGTAGCGTTATGCTCTGGCCTTTTTAGTTGCTGAACTTTGAGTTAAGGGGTTAGTCGTCGCTGCCGCTGTTGTTATGCAGAAACTTATAGGCTTTGACAAAATTGGCCGATTTTTGTGGCCAGCCGCTAATCTGGCTGCTGTATTCGGTTTTCACAAAAGCCAGCAGTTGCTCAAAATCTGGCCTGGCTTTGGTTTGATTGCGGTTTTTGCTAAACATCAGTGCCAGTGCCTCTTCCGACATGGCTTGCAACTCGTGTCGCAACCTCATGTCTTGTTGCTGCTCGGGCGGCAGGTCAGCCACTTGTGCCAGGTTCGCTTGTTGCGTTAAGGCTTTGGTTCTTTTGTCGTCGGCGGAAAAATAGCCATACCCTGACGCCGTTTTGGCACCAATACCATTGGCCGCCAGCGCTTTTTGCAGCAGGTTTTTAACCAGCGGCGCATAATCGGGCACTGTGCCCACCACAAAGACAAAACTGCCCTGCACC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCACTGCCCGGTTATGACGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 69808-70655 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZUF01000004.1 Rheinheimera sp. YQF-1 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 69808 35 100.0 33 ................................... TTTCTAAGAAGGCCCTTGAAATTTTACCTTTCA 69876 35 100.0 32 ................................... TGAGCCCGCAGGCTCAACAGTTCATTTTTTGT 69943 35 100.0 32 ................................... CGTGCATCAGAAGTGCTTTCATGGGTGTACTC 70010 35 100.0 33 ................................... TCTGCCGCCAGCATAGCTTTGATAGAACGTGAG 70078 35 100.0 34 ................................... GGCCTAAGCCTGCTGAGAAAACCACACCCGCCAT 70147 35 100.0 32 ................................... TTGCGTCGCGCAGGATGGTTTTAATCACCATC 70214 35 97.1 33 ...........................T....... CTCTGTTGAGGAGGTTGAGTTATACAGAGCAGC 70282 35 97.1 34 .................................T. GGCCTAAGCCTGCTGAGAAAACCACACCCGCCAT 70351 35 100.0 33 ................................... CTCAGTTGAGGAGGTTGAGTTATACAGAGCAGC 70419 35 100.0 32 ................................... TTATTGGGTAGTACCAGCAGTCAGTCATGGAG 70486 35 100.0 33 ................................... TCACGAACACGCTTCACACGCCCTTCCTGTTGT 70554 35 100.0 33 ................................... TCACGAACACGCTTCACACGCCCTTCCTGTTGT 70622 34 94.3 0 ..............................-..C. | ========== ====== ====== ====== =================================== ================================== ================== 13 35 99.1 33 GTTTGATCACTGCCCGGTTATGACGGGATTAAGAC # Left flank : TGTGTTTGAACTGCGCTTACATGGCCAGCAGCTCAGTGAGCTTAAAACGCAGGTGGCGAAAGTCATCAAGCTGCCCGACCGGCTGCATTATATTCCGCTCTGTGGCAAAGATTTAGGCCGCCGTATGGCTGATGGGCAAGGCACAGTGCTGTATTTTCAGGACTACCGGCTGGTCACTTAGCGGTTGGCCGCAGGTTATGGCAGCGAATCATTACGCCGTTTGTAAGCTGGGTTTGTGGTTAAAAAATGCAGCGTGCGCTGAAATTGCAAAACAGTATTGCAAATTGCCGTGCCGGCAAGGGCGTTTTTAGCGCTAAAACTGGCATTTTCAGCCCTTTTTCGACTTTGGCGCAGGCCGTTGTTTTTATTAGCAATAATTGGGGTTTTTAGTGAGAAATGGTGATTTATGACTGGTTTTGTTTGGTTATTCGGGAATTTTTTCGTTTCGCACCGACTTTGGGGTCTGCAGCCCTTGACTGGCACGGCCTCCAGAGGCTAGA # Right flank : CGTATTTCCTTTTCAGAGATCCATCTGCTGTATTCAGCGTTAACACAAGTTTGTTCGGGATGAAGATAAGGCCGTTGTCGGTAGGCTTTTGACTGAATTTGCATTGAAAGGAGAAGAGTCATGCGGATTGAGTTGCAGCTATTTTTAAGCCGCTTTAACAGCCTTGAAGTGATAAGTGTGTTGCTTACATTGCCAATCTTGCTGCAGTTGCAACCCACGGATATTCCGCTGTGGGCCTGTACAATCTGGCTAGCCAGGCCCAGTGCTGAGGTGGATAGCTAAGTTAATTTAGTAAAGTCGTTAAAGGTGAAGTCGTAGCTAATCACTTCTTTGCTATTAGTGTCGACGTATTGGTTATGAACATCTGTGACTGTCGCCACCAGAACACCGGCGACAGAAGTATGTTTTTGCCAGCCGGTAATATCAATCACAATATCTGACTCAGTAACCTGTTGTTGTATTAAGGTATGCACCGCAAAAAATACTGCAGCACTGGTTTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATCACTGCCCGGTTATGACGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 378-1081 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZUF01000072.1 Rheinheimera sp. YQF-1 Scaffold72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 378 31 100.0 37 ............................... AAAATACTAAACAAACAACAGCGCCGCCAGTCGCTGT 446 31 100.0 37 ............................... AGGCTAAAGGGGGCGGCAGTGGGGGCTCTTAAAATGT 514 31 100.0 37 ............................... GCTCAGGCCGTTCCTGAGCCTTTGGCTATTCAGCAGT 582 31 100.0 35 ............................... GTATGATAAAGGCGTAACCGCTGCCGTATCTAAGT 648 31 100.0 36 ............................... TGTGCGCCTGGTCGAACTGTCCCACTTACTGCGAGT 715 31 100.0 37 ............................... ACGTATCACCGCTATTGGGCTCAAGCTGAATTCGCGT 783 31 100.0 35 ............................... CTCATGTTAGATAAAAGTTTATGTATCTTGCTCGT 849 31 100.0 36 ............................... TAATCCCTTGAGCAATTGAGCGGATAACCTGGCGGT 916 31 100.0 37 ............................... TACGACATCAAACGACAATCGGGCCGCATAGCCTGGT 984 31 100.0 36 ............................... AGAATCAGCTAATCCAAGTCGGTGATTTTAATTTGT 1051 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 11 31 100.0 36 CGCGTCCCGCACGGGGCGCGTGGATTGAAAC # Left flank : GCGCGGTGTACAGAACTACTGGATCAGATCAACCCTGCTCAGTGGGTCGCTCTAAAGTCTAAGCTGCTATCAACCTATGATGATAGTGTCGACAGCTTGCGTTTTTACATTCTTGGTAAAAATTGGCGTAGTAAAGTGGAACATCATGGTGCCAAAGCAACGCTGGATTTATTTGCCGATCCCCTCATTATTTAGCTCATCGCTAACCTGTAGTGCTCTTTAAAAAGCCGGAACATTAGCGGCATTCTTAGTCACTGATCCTAAAGGTAATTAAGATGCCGCCTTACCCGTGTTCATTTGTTTCTTTCATATTGATCTGACGTTAGCGCAAATTGCACATAACGGTTAGACTATGCGTGCCTTTGCAAAAAGGCAGTC # Right flank : T # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGTCCCGCACGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.90,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //