Array 1 10397-7721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXN010000089.1 Yersinia kristensenii isolate IP28590, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10396 28 100.0 32 ............................ ATCGCAGTAATCAGGTCTTTCCAGTCAGCTTC 10336 28 96.4 33 A........................... CAATTTGCAGCCGAACAATTCAACCGATAATTC 10275 28 100.0 32 ............................ TGCTGCTGAAAGCAACTGGCAAATCCGCGTTC 10215 28 100.0 33 ............................ ATTAGAGGAACTATGTAAATGATAATTTTATAT 10154 28 100.0 32 ............................ ATCCACCGGGCTTTAATACTCTATATGCTTCT 10094 28 100.0 32 ............................ TGGCTGTTTAACCACGCTTTGAGGGACAACCC 10034 28 100.0 32 ............................ GATGATAACCGGCAAGCCTAATAAGCCACCAA 9974 28 100.0 33 ............................ CATCCTGCGTACCAGCTGCGCAACTTAACTCGC 9913 28 100.0 32 ............................ ACCTGAATAGCTTCCGGGTGGCTGCCAATAGG 9853 28 100.0 33 ............................ TTCAGGAACTAACCATGCAGTCTAAATAACTTC 9792 28 100.0 32 ............................ TCCCATGCCTGTGGGCTTTGCTGCAACCAGCA 9732 28 100.0 32 ............................ TGAATAAATCTTCTTAGTAGATCCAGCGTCTT 9672 28 100.0 32 ............................ CGCATGAAATGACGAACTACCGGCGCGATGAC 9612 28 100.0 32 ............................ TACATGCTTGAAGCCGCTACCGCAGCAGTGAA 9552 28 100.0 32 ............................ TTGAGTTGCGCATCCTTTTCACGCCGGTTCGC 9492 28 100.0 33 ............................ CACAGTTGAATTCTCAAGCGGGGCTTGGTAGTT 9431 28 100.0 32 ............................ TCTCGAGCGGTAATGACTAGCGTCAACTGCCC 9371 28 100.0 32 ............................ CAAATTCAGCAGCGGCTGCTATGTCACCAGCC 9311 28 100.0 33 ............................ GGGCTTACCGAGTGGACATGAGAAAGTGTTTGA 9250 28 100.0 32 ............................ AGATAGAAACCCAGCGCCAAGCCGTAGCCGCT 9190 28 100.0 32 ............................ ATTTGCTGCAGCGCTTCATTGACCACCTGAAT 9130 28 100.0 32 ............................ ATCCGTAGGTAAGCCGGATCACCGCAAGCAAC 9070 28 100.0 32 ............................ TCGTCGCGGTACGGGAAGATAATCACGTCAGC 9010 28 100.0 32 ............................ GAAGCGGGATTGAGTTTCAATAGTGAGAATTA 8950 28 100.0 32 ............................ GTGATACCTTTCGGGCATTCATACGGGCGAAC 8890 28 100.0 32 ............................ ATGAACCGGCGCGTGAGGCTTTGGCGGTCAAC 8830 28 100.0 32 ............................ GAGAGCCTGAAAGCTGATTAAGAAACGGTAAG 8770 28 100.0 32 ............................ CGATTATTCAATACACAGATGAAGCTGGGTTT 8710 28 100.0 32 ............................ AGGAACCCAAGCGAAGCCTCCCACAGAATAAC 8650 28 100.0 32 ............................ TGGAAGCCATAAGTTGCAGGGCGGAAGTCGTA 8590 28 100.0 32 ............................ TCGTCGCGGTACGGGAAGATAATCACGTCAGC 8530 28 100.0 32 ............................ GAAGCGGGATTGAGTTTCAATAGTGAGAATTA 8470 28 100.0 32 ............................ GTGATACCTTTCGGGCATTCATACGGGCGAAC 8410 28 100.0 32 ............................ ATGAACCGGCGCGTGAGGCTTTGGCGGTCAAC 8350 28 100.0 32 ............................ CTGGATAACTCGACCGTTGGGGAGCGTTACAT 8290 28 100.0 32 ............................ GATGTTGAATTGATGAAGATTATCGCAAGTTA 8230 28 100.0 32 ............................ GGAAGTTCATCTTTTGGTTGGTTCATTAATGG 8170 28 100.0 32 ............................ TGCCCCAAGTCCTTAGCCATCAGCGCCTTGTA 8110 28 100.0 32 ............................ CAATAATCAGCCACGTATGCGCCACGGCATCG 8050 28 100.0 32 ............................ AACCCATCCGGGCTGGCTGCGGTGCGCATACC 7990 28 100.0 32 ............................ GCTTACGGCAAAAATGCCGCCGACTTTATCAG 7930 28 100.0 32 ............................ TCTGCATTGGCTCTAAAAAGCACATCTTTAGC 7870 28 100.0 32 ............................ TGATATTGTCCGGCATAGATGCCCTCGACTTG 7810 28 100.0 33 ............................ AAGAAAGCGGAACCAATTGAGGGTGAATTGGAA 7749 28 96.4 0 ....................T....... | T [7726] ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGTCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGAAATTATTCCGATACCGACACGGGTTCAATATCGGGTCGTGCGCCGCGTGCAGGTGAAAAGTAATGCGCAGCGGCTACGCCGTCGGTCTGTCAGTAAAGGCTGGCTGACGGAAGAAGAGGCACTATTGCGGATCCCAGATAATCGTGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGAGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCCGAGAAGATTAAAAAAGCCTTTTTTATGATTTTGGTGGGTTATTTTATTATAATCATTGTGTTACTCATGTTTCATTACT # Right flank : TCTATCCGGCGTCTTATTTCTCCTTTTTCGTTGAATACCTCTAAAGAGGTATATATTTGATTTTATGTAAAAATTGTTTGATGCTGAGTTTTTTTTGAGCTGGTTCATAAAATTAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCCCACTGGATGAAATCTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAAATGACTGCCTGGTGCAAACACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGACCAGTTCACCTCTTGGTTGAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 19700-18888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXN010000089.1 Yersinia kristensenii isolate IP28590, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19699 28 100.0 33 ............................ TTGCGCGAACCGCCCTCCATGGTTTTATAATAC 19638 28 100.0 32 ............................ ATCAGGAAACTAAGCCCCGAACCGAACAACCA 19578 28 100.0 33 ............................ CTGTCGCCGTGGGTCGCTGATAATGGTGCTCGG 19517 28 100.0 32 ............................ CATTTCCTGCGTACCCAGTTCATTTCTCGCTA 19457 28 100.0 32 ............................ ACTCGCGGTGGTAGTCAATTCGATTTATTAGC 19397 28 100.0 32 ............................ GCTGTGACCTCGCCGGTGTCGTCACGCTGGTA 19337 28 100.0 32 ............................ TATTTCAAGATAAAAGGGCTAATTCAACAGTA 19277 28 100.0 32 ............................ ATCGGGCCATGTTGCATGGTCTTTCAGCATCA 19217 28 100.0 32 ............................ AGCCGCGCCAGTCAGGACGACAGGCTGCTCAT 19157 28 100.0 32 ............................ CTACGAACTTCAATTATCCCAGCCCTGTTCTC 19097 28 100.0 32 ............................ AGCAAGCGCCGGACGGCACCCCGTATGCTACC 19037 28 100.0 32 ............................ AACTGGAAGCAGCACAGAAAAGTAACGCATTC 18977 28 100.0 32 ............................ AGTTAAGACGAACTGCAATAGCGACGAGGAAG 18917 28 89.3 0 .....................A....TT | AC [18891] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCTGTTTTCCCTGCTTGTTATCCTTGCTTAATCTCCTGAAATACCTCAATTTTTATCCGGTAATATTTATTCTTTCTGATATAACAAAACGAGCAAAACCCACCCTAAAATAGTGAATTATAACTTTTTCAAACTCCCTTTTTGTTCGTCACATCATCCGCAGTAGAAAAGGCTTAATGACATTTTGCCTTAATCCCAACTTGAACCCTTTTTTTAGCGTGTTTTTTAACGCATTGATTTTATATAGAAATCCCCAAGGTTTTTAAAAAATCATTTTTTATCACTGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : GAGAGCCCAAACACATTTTGTTACTTACAGTAGGCTTATTACTGTTTTCTATTACCGACTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTAGTAAGGCGCGCTCACTGACTGGCAAGATACATTAACCCGTTAGAACGATTTGGGTGTTCTGTCTAAGGAGGTTGCTGGTGATGGACAATTCTATTCATTCCTCTGATCTAAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGTGTATTAGTTAACGGTGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAATCTCTTTATTGGAATATCCCCATAGCGAATACCACTGTCATCATGTTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGCGCACCACTTTTTGCGGCGAATGAAGTTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //