Array 1 9727-8978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPA010000047.1 Pseudomonas cichorii strain LJDD03 Scaffold47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9726 28 100.0 32 ............................ ATTTGTATAGTGCTTGTTTGTGAAAGGTATAA 9666 28 100.0 32 ............................ ATGATCGAGCTGAACGCTCTGTTGCGCTCGCC 9606 28 100.0 32 ............................ CACAAGCCGACAAGCTCAACGCTGATTTGACT 9546 28 100.0 32 ............................ CACAATGGCCGCCGTTTCAGCGGACCATGCTA 9486 28 100.0 32 ............................ TTGCAGCCATCCCGGCCACAGGTGTCGCCTTC 9426 28 100.0 32 ............................ TTTGCTAGCGTCATACGATCCGACGCGACCGT 9366 28 100.0 32 ............................ CAACTGTGAAGACTTTGCAGTTTCACCGTTTT 9306 28 100.0 32 ............................ AGCACCCGGCGGGCTGCACGATTGCCGGCACT 9246 28 100.0 32 ............................ GAAAGTACTGTGCCGCCCGACAGACTGGTAGT 9186 28 96.4 33 ....................T....... TTTCCGATACGGATCGGGCTACCCCCCCAGCAG 9125 28 100.0 32 ............................ CGAAAGTATTCCCCAAAGTAATTGGTGTAAGC 9065 28 100.0 32 ............................ GAACTGCTGGGCGTCGTACTCGATGCAGTCCA 9005 28 92.9 0 ............A.......T....... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : ATGGCTATCATTCCTCAGCGTCTATAGGTACCAATCTAAAATTTGTATCCCTACCTGTATCCCTAATCGCCACAAGAGCCTGTAGGCTAAGGAATATATGGCATAAACTGGTCCCCCTCGGGCACCAAACAGCAAGACACTCAAGCAGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTATCCCGTCTGCCTGCTGGGCCTGTAAGAGCGAATTCATTCGCGAAACGGCGTTCCAGACAATACATCTCCTGTAAATGTACCGGCCTCTCGCGACTGAAGTCGCATCCTACAAGTCCGGTGCCAGACCACCACTTAACGCACCCTCTTTTTGACCCTCTTTTTTCGCCCCACCATGCACCCTTTTAAAATCAATCACTTACAGAACCGGCGAAAAAAAGGGGTAAAACGACCGCAAGCGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGCAGAGTGCCTA # Right flank : ACCAATCTCATCACTCATGCAGCCTGTTCAACCGCAAAATCCTACGCTCCTCTCATACCAGCCCTACCATTACCCACTCCCCATCCATCCACCCAAACTGAATCTCCTCATTTAACCCACACAGCCCCCCAAGCTACCCTTCCCGACAGTTCGCTACCAATTCAGCGACCGGGTTTGGCGACCCGACCAAGCTAAATCTCTCCCCATCGTGATGCAGGCGCTTTATCCTGTCAGCTCATCGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGCCTGCCGGGCTTGGAGATGGCTACCGGTTCGCCAACCCACACACAACTGCCACCCATTGTTTGGCGACAATTCGGGCAGTTCCAACAGCCATATCCGATGAATGAAAACCATGCAAAATTTCAACAGCGATCTTCCCTGTACATCCTCCTTCGAATCCACCCTCTTCCTCCGCCACAGCCGCATGCTGCGCGCCATGTTCACCGAATCCCAAGCCTGGTTCTGTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1914-2363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPA010000032.1 Pseudomonas cichorii strain LJDD03 Scaffold32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1914 28 100.0 32 ............................ ATATGCTGGGCCATAGCGGCCTGGGCGGCAAA 1974 28 100.0 32 ............................ TGGTAATGGTGATGCCGGAAACCTTTCACGCG 2034 28 100.0 33 ............................ GCCGTCGTGCGTACATATACAGGCAGCGGCAAC 2095 28 100.0 32 ............................ GCGAAAAAGCTTTCGGACTTCCAGAAACGGCC 2155 28 96.4 33 ......................T..... AGCTTCGAACCTGGGCGCAGGCCACGGTACTCA 2216 28 96.4 32 ....................T....... CGTCCGGGAAGTCGAGCTGCACCGCGTACACG 2276 28 100.0 32 ............................ TTGTCACGACAAAGCAAATAGAACGGCCTGAC 2336 28 85.7 0 T...........A.......T.T..... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGGGCTTAAGCTTGAAGTACGTGCTATGGCCGCTGTGCGTCAGAGATCTTCGGGGCTGCCGGTTTCCTGGATACCGGTTCGTCAACCTTCGCACAGCTGCCACCCATTCGTTTGACGACGTCGTTTGGCAGCTTCAATCATCCAGGAGCTACGCCGATGTACACTCTCAATCCCTCTGCGCCCTGCACAGACCAATTTGAAGCCCTCGTTTTCAACCGCAATCACCGCGTCTTGCGTGCCGTCATGTGTGACGCTCAGGCCTGGTTTTGCCTGTCGGACCTTGCGCGTCTGATGGGCAAGCGGCTCGTGATGTGAAAAGCGATTGACCTTCGCGCCCGGCAGTTTTTTGGCAAAGGCCTGCCGGGTTCTGACCCTCTTTTTTCGGCCCACTTCAGCCCCTTTAAAATCAATGACTTATAAACACCTCGAAAAAAAGGGTAAAACTGCGCTATGGCCATGGTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : ACTTTGCGGCATCAATGACGTCTCGCGGATAAATCCGCTCCTACGCCGATACGGCGGGTGATTACCTACAGGCAGTCCGTATCTCACCCAACTCTTTTGCCCTACCGCACATAACCCTTCGGAACCGAACAGGTAAGATAATGCTCTTATGGTTCACTGATGTGACCGAGCGTTGAGGGTGGGTGTGTGAGTGATAATAAAGTCAGGGTGAATAACCTGGTTACGGGTGATATCTCTCATCCGCAAAAAGATATCTTTTTTGCAGCCGTCGAAACCACCCGGATGCCGATGATATTTACCGACCCTCATCGCCCGGATAATCCCATCATCTTTGCCAATCAGGCTTTTCTCGAGATGACGGGCTATTCAGCCGATGAGATCGTGGGCCGTAACTGTCGCTTTCTGCAGGGGCCGGAAACGGATCGCGAAGTTGTCGCTGCCTTGCGCCAGGCCATTGCAGACAAGCAAGACATCGCGACGGAAATCCTGAACTACAAGAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 17249-16741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPA010000032.1 Pseudomonas cichorii strain LJDD03 Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17248 28 100.0 32 ............................ ATTGATCGATGCAGACGTGACGACCGTCCCAG 17188 28 100.0 32 ............................ ATCAGATAGGCCGTGTCGTCTCCATCCTCAAT 17128 28 100.0 32 ............................ CTCATGTGGCGGGCGATTTTGCTGCGTATCTT 17068 28 100.0 32 ............................ GTGCAAACCATCACGCAGTAAGCTGCTGAGAG 17008 28 100.0 32 ............................ AGAAGGATCGTGCCGCGCTCGCGAACCTGATT 16948 28 100.0 32 ............................ TTCGGCCAAGCGCTGATCCCGATGCTCACGCC 16888 28 100.0 32 ............................ TACGACGCTTCCGTTCGGCAGAACTGGCTCCA 16828 28 100.0 32 ............................ AGTAGTGGCGTGGCTTGAACGCCTCTTCCCCG 16768 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CAGCTTGCTGGCGAAAAAGGCCTGAAAACCGGCAGATATTCTGCGTGTGTACGTGGTTTTTAGAAAGATGGTTTGATTGTTTCTGAGCTACCTGTTCGGCAGTTAATTAGCGCAGATGACCGTTAATGACCGGGTCGTATTTCTGAGCTGCCTACACGGCAGTGAAGGACGCAATAAGGGAGCTCGTTACGGTGATCGGTTTCTGGCGAGAATCAATACTCCCTGTTGTGTGTCTTGTCGCGGGCAAGCCCCCTCCCACGGGGATCTGATTTATCCGCGACACGGTATCGAGGGCAATACATTTTCGTGGGAAGGGCCTTGGCCGCGACAGTGCTCAGACAGAAATGCACCAGCACTGAACCCTTTTTTCCCCTCTTTTTTTCGCCTCAGATTCGTTCCTTAAAAATCAATGACTTACAAAACTCGGTAAAAAAAGGGGTAAAACAGCGTTTGGTACATATTTTTCTTTGAAAACGGAAGGTTATCGAGCAGAGTGTCTA # Right flank : TTTAGCTACACGGCAGTGAGCTTAACTCGGTCGAGCAGGTATTCACCCAGGCGTTTCTAAGCTGCCTGCATGACACTGAAGTCGCCAGCAAGCTGCCTCCCACAAAGTAATTCATGACCTTAACTGATCCGCCTTGCTCGGTAGGCGGGTTCATTCGCGAAAGGGTACATCCGACATAGATATGTCGTTTGAAATACCCCTTTCCCGGATGAATCCGGTCCTACAGATTTGAGCCGTGATCAGCCAACCCTGCACAAACCTTCTAGACTTCCCACCGCCCATACGCGATAACACTCCATCCCACCCCAAGCCCCATAAGCCCACCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGACACCGGTATCGAGACGTTGCATGCGCATTTCGAGGGGAATGCCCATGCCTATGATCCGCATTGGCATGACAGTTATCTGGTAGGTGTCACGGAGCAGGGGGTTCAGCAGTTTCATTGCCGGCAGCAACGTTACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 27511-26704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPA010000032.1 Pseudomonas cichorii strain LJDD03 Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27510 28 100.0 32 ............................ GTGAAGCCCAGAGGACGCAATCTGCGGGAAAG 27450 28 100.0 32 ............................ AATCGCCTCGTGCAAGATCGAGGTATCGGCGA 27390 28 100.0 32 ............................ AAGCACGACAACGCCCACCGGCAGATCCACTT 27330 28 100.0 32 ............................ ACATCCCTCCAGTACGTTGCGTTCGGAGGTGC 27270 28 100.0 32 ............................ GGCATGACTATTAGCGGCCTTTGTGACACCGG 27210 28 100.0 32 ............................ ACCGACAACAGCCGCTGCACCAAACGAGCCGA 27150 28 100.0 32 ............................ ACCGACAACAGCCGCTGCACCAAACGAGCCGA 27090 28 100.0 32 ............................ ATGTAGCGCATCAGTGCAATGCGCAAGATGCG 27030 28 100.0 32 ............................ ATGTCAATGTCGCCCGCACGTTCTGAGTCCTG 26970 28 100.0 32 ............................ CCCGACAACAGCCGCTGCACCAAACGAGCCGA 26910 28 96.4 32 ..C......................... ATGTCAATGTCGCCCGCACGTTCTGAGTCCTG 26850 28 100.0 32 ............................ CGAGGCCTGGGCGACCCCAGCGGGATTACAAG 26790 28 92.9 32 ...........CA............... GGTCGGCGGCAACCGACTCAGGGCTTTTAATC 26730 27 75.0 0 G..........CAC.......C.C-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.5 32 CTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : AGGTGGTCAGGGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTTGAGAGTGGGGGTGTTTGCTGCTGAGAGATCTGAGGGGATTGGGTGGGAGCGGATTTATCCGCGAGACGGAATTGAAGACAATTCATTTTGTGTGCTGAGACGTCCATCCCGCAGACCCAACCTTGTGAGAGGGGCCTTGGCCGCGACAGCTTCATCACACGGGATATGTCAGGAAATGGAGTTTTTCCAGGCTGTCATGTCGCAATTTCCGGGTTTTAGCGACACGTTATTGGGTCATGTCGTTGGCGACGACATATCAAAAGCAGGGCCTGTCGCAGCATATGAATATCTGTCTACGGCAGACAGGAATGAACCCTTTCCTGACCCTCTTTTTTTCACCATAGGTTCGTCCTTTAAAAATCAACGACTTACAACGCTCGATAAAAAAGGGGTAAAACGGCGGCAAGCGCATATTTTTCTTTGAAAACGGAGGGTTATCGAGGAGAGTGTCTA # Right flank : CCAAAGCCCTCGTAATAACCACATTACAAGGGCTTCAGTCCGCATCAAAACCAGGGAACAGTCGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCCGGCTGTGCGTTGGTCTGTAATGATCCATGCTGGATGAACAGCAGAAACGTCTGGCCACTGGTGCGGCTGCGCAGTTGGGTGAAGGGCAGGTTGCAGCGTTTTGCGGCGCTGTCGGGGATGCGTTCGCGGGCTTGTTCTTCGGTGATGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGTTCCGGGTTGCTGTCCACTTGCACGCGGCTGACGCGGCGATGCTGCGCGTCAGCAGGCACCATGCTCAGTTCGCCTACCCGCACATGGTCACGCATGCCCGTCAGCCAGGTCAGTGCCATCAAGGCATCCAGCGCTTGCGCACTGCCATGCAAGCGCAGACGGTCGCCCAGGCCTCTGGCCTTGCCTCCAAGAGCCGGGAAGCTGATGCCGATGTCATTGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //