Array 1 24617-23130 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSI01000097.1 Neisseria meningitidis 2000080 gnm2000080.contig.96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24616 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 24550 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 24484 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 24418 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 24352 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 24286 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24220 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 24154 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 24088 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 24022 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23956 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23890 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23824 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23758 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23692 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23626 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23561 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23495 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23429 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23363 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23297 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23231 36 100.0 30 .................................... ATATGGAAATCGAGTTTGAAAACCGCCGTT 23165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //