Array 1 506593-505542 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSQH01000001.1 Pasteurella multocida strain S298D contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 506592 28 100.0 33 ............................ CGTTTACAATTGGGTAGATGTTTACTCGCACAT 506531 28 100.0 33 ............................ ACCGCACTCAACAAGACGGAACCAAAGCCCGAA 506470 28 100.0 32 ............................ GATTACAGGCTGAAGCTGACAGAGTACGACAA 506410 28 100.0 32 ............................ TTTTTAGGGTCAAGTGCCGCTGTACGCATAGC 506350 28 100.0 32 ............................ CGTGTAAAACCCTTCACCGAACAGTTCTTCTG 506290 28 100.0 32 ............................ TTATTTAATTCACATTCATCCAGCCTCAGTTT 506230 28 100.0 32 ............................ ACCATTTGCTAACGTTAAAAATCGACGCATAA 506170 28 100.0 33 ............................ AATCAACGCTTTGCTTGCGACATCGCGCTCAAT 506109 28 100.0 32 ............................ TCTTCACTCTCAAAACTTATCGTCACTGAATT 506049 28 100.0 32 ............................ TATCAGTAGGGCTAAAGGTTGTAGATGATGAA 505989 28 100.0 32 ............................ ACTTAACCAAATCCAGTTACCGCAAATTTCAA 505929 28 100.0 32 ............................ AGACTGGATAATAGATTGTAATAAACAACAGT 505869 28 100.0 32 ............................ GCAACAAAAGCAGCGCAGACTGCAACCAGAAG 505809 28 100.0 32 ............................ TCCATCACATCGTCAATTTCGGTTATTTGATG 505749 28 100.0 32 ............................ AATAAAACGGATCGCTTAAAATTTCGTTGTAT 505689 28 100.0 32 ............................ TCTTAAGTCTTTGTCATCTTCGATATTAATCA 505629 28 100.0 32 ............................ AAATTGTAATTTATCTAATAAATATGATAGCT 505569 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : | # Right flank : ATTTAGCTTATCAGGTAAAAGCAACCGGCTCAGTTCACTGCCATGTAAGCAGTGTCAATTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTATTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29602-27772 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSQH01000012.1 Pasteurella multocida strain S298D contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29601 28 100.0 33 ............................ GAAAGGAAGTAGAAAATATTACTTTCTACTTCC 29540 28 100.0 33 ............................ ATTAATGCGCAAGTATTACAGCAAGCTTTGGTT 29479 28 100.0 32 ............................ TATCGTAGTTTATAAGCTTGCACTGGTTTCTA 29419 28 100.0 32 ............................ ATGTTCTACCTGTTCATTTTTCCAAAAACTAT 29359 28 100.0 32 ............................ AACTGATTTATGATCGCCAAAATTACCATTTT 29299 28 100.0 32 ............................ GCTTGAATGCGTTCATCGAACGTTAAGCGGTC 29239 28 100.0 32 ............................ GGGAAAAAGCGATATTCATATCGACGATATCG 29179 28 100.0 32 ............................ CGCTACGCAAACACCCTAGAACAAGTGGTTAA 29119 28 100.0 32 ............................ AGATGCAATCCCTCTTGCTGAGCGTCGTTTCG 29059 28 100.0 32 ............................ ATCTGAAAATTTCTAAATCCGCCATCGGATAT 28999 28 100.0 32 ............................ CCACCGGAACCACAGCAAAATGATCCGTATGG 28939 28 100.0 32 ............................ CAGATGCTCCTAATATCAACCCAACAGAGAAT 28879 28 100.0 32 ............................ TTGCCCGCATTCGCTAATTATTCACGGTAAAG 28819 28 100.0 32 ............................ TAATCGTTCGATTAAACCAATTCTGAATTGAT 28759 28 100.0 32 ............................ TTTTTCAAAAACTGCGCGGCAATGTCTGCTTG 28699 28 100.0 32 ............................ AATTGCAACGGCTGTAATGGCTGTTTTACCAT 28639 28 100.0 32 ............................ TTACTCAAACAAACAGATTTTAACACTCATCA 28579 28 100.0 32 ............................ TGTTTAATATAAAAATGATCCTTATAGATTAA 28519 28 100.0 32 ............................ AAAGATGTTGGATTAATGCAGATTAATACTAA 28459 28 100.0 32 ............................ GCTGAGAATTTATGGGCAGCGATTAAGGCAAT 28399 28 100.0 32 ............................ AATCCGAAGAATACTCGTGGCATGCAAGGCAC 28339 28 100.0 32 ............................ AGTAAGAAACCCCTTGGGCAAGAATGAAAAAC 28279 28 100.0 32 ............................ AATGAAAGAGAAAAGATTGACTTTCAGATAAG 28219 28 100.0 33 ............................ CATCAGGCATAACTTTTAATTCTGGATCATTAC 28158 28 100.0 32 ............................ GCGATATGACGCACGCTGAACTGGCATAGTCC 28098 28 100.0 32 ............................ CGAGCTTTCCAAAATTCAACTTGTGACAAATT 28038 28 100.0 32 ............................ ATGTAACACCGTCGGTAGTACCGTCTGAATTA 27978 28 100.0 32 ............................ CATGCGATTTTTGAATTTCGACTTGCATTAAT 27918 28 100.0 32 ............................ TCATCGCAAACGATAGCACACTCTACTGCATG 27858 28 100.0 32 ............................ ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 27798 27 89.3 0 ........-...............A.C. | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTAGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTATTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : CTCATAATCGGAAGAGAGCGAGTTTGAATCGTTAATTATCAACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACCTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCCGCGATGCGAGAGTTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGCACCCCCTTGTTTAATGGCACAGAAGCCGAGATTGGCTGTGAGTTTTTTAGCCCACAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 720-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSQH01000007.1 Pasteurella multocida strain S298D contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 719 28 100.0 32 ............................ ACTTGCATCAGCTCACGAAACGTGCCCTGTGC 659 28 100.0 32 ............................ GCCGGGTGCAGCCCCAAGTCTGTTCTGCAAAT 599 28 100.0 32 ............................ ACAAAAGTGGCTTTTCTTTTATCTAAAAATTG 539 28 100.0 32 ............................ ATCAACTGGTGCAGACAAAACCATAAATGGAA 479 28 100.0 32 ............................ TCTGTTGTTGGCTGGTTGCCGTTATTAATAGT 419 28 100.0 32 ............................ ATTGATTAAAGCATTTGCAATTGTTGCGGGAT 359 28 100.0 32 ............................ ATTAATGATTTGCTTAGCCATATTTGTCTCCT 299 28 100.0 32 ............................ ATTGAAGAGCTTGCTTCCAGATTATAAAGCAA 239 28 100.0 32 ............................ ACTATGTATTCTCGGCTCCATGCTTGAACCTT 179 28 100.0 32 ............................ AACTGATTTATTAGTGGTTATGTCTAAGCGTT 119 28 100.0 32 ............................ AACGGTTCTTCAAGTAGTGGCGGTAATGCACA 59 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATTTTTAGGTGATGGGATATTTCGTTATGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50901-51857 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSQH01000003.1 Pasteurella multocida strain S298D contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 50901 37 97.3 35 .......A............................. TGGTATTTGCGTGGAAATTTGCGAGCACCACTAGT 50973 37 100.0 32 ..................................... TCGCTTTGATGAGAGTACGAACTTGTTTGTTT 51042 37 100.0 32 ..................................... TTTTCCATTTGTTAGTCCTCCATTGTTAAAAT 51111 37 100.0 36 ..................................... TCACGCAATAGATAACCGTCAGGTGAGATCGGGGTG 51184 37 100.0 33 ..................................... CCGCTTTGATAAGAGTAAGAATCTGTTTATTAG 51254 37 100.0 32 ..................................... ATGTACTCTTCGCCACTAGATACAAGGGTGAA 51323 37 100.0 34 ..................................... CGAAACGTTCTATAAGCTCCTCGACGGACTCCAT 51394 37 100.0 30 ..................................... ACCATCTTGTGTATATACTGTTGGATTCTC 51461 37 100.0 36 ..................................... TGACACTTGATATTAAACAACCAACAATTTCCTTTG 51534 37 100.0 35 ..................................... GTCACGTGTCAACGGGATGTACTCGATTTCGATCA 51606 37 100.0 35 ..................................... ACCAATATATGTACTGAACCCTTTGTATGTGATAT 51678 37 100.0 35 ..................................... ATTGCGATCAGGGTGATATTTGATAGCCATTTTTT 51750 37 97.3 34 ....................................T TAATCAATTTAGATACAATTTTTTCTTCCTTTCT 51821 37 75.7 0 ...........T.A........C...A.A...T.TTT | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 97.9 34 GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Left flank : CAACAAACATTTTCGCCAAACGCACGGGGGTTTCTTCTAAACTATCATCGCGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCATTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTGAGTTAAAACACGTTTTATAAAAAATAGACATAGTATAAAAAATAAACTTGAGGTAAAATAACCAAATTCTTTGGCTGACAGACTAGGTTTAAGTTGATTGTTTTTTGTTCAAATCAAGGGGTAGCTTTCCACATCAATGAAGAAATTGGGAAGCCTACAGATAACATTCTGAATACAAAAGAAAAATCCACCTATTACA # Right flank : TATGTAGCGTGGGCATACTTGCCCAGCACATAACCCCTACGCTTTCCCATTCGAAAGTACGATCATTTTTCAAAAAGTTTTACAGCTTTATCTCTGCTTATTTCTTATCAGTATAGGCTCAATAAAATGAGATCATCCTGCTTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCTGATTGTGCGCAAGCCGAACAACTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAATGTGCCCTCGTTTGATAACTCGGCGATGGACGGCTATGCGGTGCGGCTGGCAGATTTAGCACAAAATTTAACTCTCACCGTAGCAGGAAAATCCTTTGCGGGCGCACCTTTTGACGGAGAATGGCAAGCACAAAGCACGGTCAGAATTATGACAGGGGCAATGTTGCCAGCCGGTGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //