Array 1 58954-60109 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JPUF01000005.1 Treponema zioleckii strain kT3 contig00005, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     58954	    36	 100.0	    30	....................................	CGTTCTGTAATTTCCTTGGGTTTCGGGTAT 	
     59020	    36	 100.0	    30	....................................	ACAATCGACATTGAGAATATGGACATGGAA 	
     59086	    36	 100.0	    30	....................................	ATGGGATAGTGACGATGTATCAGAAAATAC 	
     59152	    36	 100.0	    31	....................................	AACTGCGTCAAGTGTAATTGACGCGAAGTAA	
     59219	    36	 100.0	    30	....................................	CGTCTGAATCTACTAACGTTTTGAGCAACG 	
     59285	    36	 100.0	    31	....................................	CCCGACGAGACGAAAGACAATTCTTTTCTTT	
     59352	    36	 100.0	    30	....................................	CAGGCGTTGAAATATGTGTCGTCTGTGTCT 	
     59418	    36	 100.0	    30	....................................	ACTATCGTGTTGGGGGGAATCATGGCTACC 	
     59484	    36	 100.0	    30	....................................	AAGGCAAGTAACACTATTGAATCTTACGCG 	
     59550	    36	 100.0	    29	....................................	TTAGACCGCAAGCGTACGGCATTGTAATA  	
     59615	    36	 100.0	    30	....................................	TTCAAAAGGCTTCTGCAATAGTTGCAATGA 	
     59681	    36	 100.0	    30	....................................	TATAGTGGGGAATACATGTTATTTTTACGG 	
     59747	    35	  97.2	    29	.......-............................	CGGCTCAGTTTAACCTTTTAAACAGGGTC  	
     59811	    36	 100.0	    30	....................................	CATGTCGAAAACCAACCTTTTATTTACATT 	
     59877	    36	 100.0	    30	....................................	CTTTTTACATTGCTTTCAACGCAAAAGCGC 	
     59943	    36	 100.0	    29	....................................	CATTTTACAGACGTGGTTATGGACGTCGT  	
     60008	    36	 100.0	    30	....................................	TTTTGTTTGCGGAATATGTTCCAGTTGATG 	
     60074	    36	  97.2	     0	...................................G	|                              	
==========	======	======	======	====================================	===============================	==================
        18	    36	  99.7	    30	ATTATTTTACATCAAACTTAGAAATCAAACCACAAC	                               	       

# Left flank :   TCTTCTTTGGCAAAAATTTTTAGCGGAGAAACTGAGAATTTAACTTTACCGGAGTTTGTAAAATGAGTCGTGAAAGGTTTAATGCGTATAGAATAATGTGGTTGTTCTGTTTATTTGATTTACCAACGAATACAAAGGCACAACGTAAACGTGCATGTGAATTTAGAAAAAAGCTTCTGGAAGATGGCTATGATATGATGCAGTATAGTGTTTACAAGCGTTTTTGTGGCAGTAACGAAGCTTGCGAAGTTCACATAAAACGCATAAAATTGTGGCTTCCTGCAGAAGGCAAAGTAAGCATATTAAAGTTTACCGATAAACAATTTGGACAAATTGAATCTTTTGAAGGTGCAATTCCTGCAAAAAAAGAAAAACAACCTTCTCAACTGGAATTCTTTTAAAAAAATGGGGAAAATAATGCAAAATCGCAACATTTTCCCCATTTTTTGATGTACAAATTCAATGTAAATCATTATTTAATATGGTTTTAGCAAACTCAT
# Right flank :  GACTAAACATTATACGTTTATCGATAACTTTTTATTATTTTACTTTACAATTATGTCGCGTATGGAATTGAAAGAAATTTGATTTCCGCGGTCGCGTTTGCTTTTGTAAATGCCTTCGTCGGCACGGGAATACATTGCTTCAAAGGTGTCTTTTGGGAATTCCGGGAAGAATGCAGCTCCGACGCTTAGGGTAATGAGTCGCTCGCAAAGTTCTGGTATGTGGATTGTCTCAATTTGAGAAAAGAATCTTTGTAAAAGTCTGTCACCGATTTCTGTATCATTTACACCAACACAGAAAACTGCAAATTCATCTCCGCCGAGTCTAAAAACTATGTCGGAATCTCGGAACGTTTTTTTAAGGCAACTTGCAATTGCTTTTATGACTTCATCGCCAATCTGATGGCCGAATGTATCGTTTATGGACTTAAAGTTGTCAACATCCATCAAACAGAACATTCCGTGTTTGCCCTCTAAAAGTGCCTGACGAACTTGTTGTTCGC

# Questionable array : NO	 Score: 3.25
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTATTTTACATCAAACTTAGAAATCAAACCACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.41,0   Confidence: MEDIUM] 

# Array family : NA
//