Array 1 12248-10628 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZSP01000042.1 Neisseria meningitidis strain Neisseria meningitidis isolate B029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12247 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 12181 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 12115 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 12049 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 11983 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 11917 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 11851 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 11785 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 11719 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 11653 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 11587 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 11521 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 11455 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 11389 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 11323 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 11257 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 11191 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 11125 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 11059 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGGAAAAAATAC 10993 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 10927 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 10861 36 100.0 30 .................................... AAGCCTTTTTTGAACTCGCTGTTCATGAGC 10795 36 100.0 30 .................................... CTTTTCCGGCAGAATAGGCGAGCGCGTCGC 10729 36 100.0 30 .................................... GGTTCGGTTTTCTGTAACGCCATATCGCCA 10663 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //