Array 1 354529-355901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEK010000003.1 Salmonella enterica strain F5-29 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 354529 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 354590 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 354651 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 354712 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 354773 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 354834 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 354896 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 354957 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 355018 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 355079 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 355140 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 355201 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 355262 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 355324 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 355385 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 355446 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 355508 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 355569 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 355630 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 355691 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 355752 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 355813 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 355874 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 372161-375121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEK010000003.1 Salmonella enterica strain F5-29 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 372161 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 372222 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 372283 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 372344 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 372405 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 372466 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 372527 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 372588 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 372649 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 372710 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 372771 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 372832 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 372893 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 372954 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 373015 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 373076 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 373137 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 373198 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 373259 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 373320 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 373381 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 373442 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 373504 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 373565 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 373626 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 373687 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 373748 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 373809 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 373870 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 373931 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 373992 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 374053 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 374114 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 374175 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 374236 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 374297 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 374358 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 374420 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 374481 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 374542 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 374603 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 374664 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 374725 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 374786 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 374847 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 374908 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 374970 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 375031 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 375092 29 96.6 0 ............T................ | A [375119] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //