Array 1 108720-107308 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB822675.1 Schaalia cardiffensis F0333 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 108719 37 100.0 38 ..................................... TCGGAGAAGAAATCCACCAGCTCCTCCCTGGAGCTGGC 108644 37 100.0 35 ..................................... CCTCAGGCGGACAAGTTCCCATGCGATACCCATAC 108572 37 100.0 35 ..................................... TCAATGTCTCGGATGAGCTGATGCCACCCGCACAC 108500 37 100.0 33 ..................................... CCGAACCCAGCGTCTCCCCAGCCGCCTCCAAAA 108430 37 100.0 34 ..................................... GGCACCCGGTCCGGCTTGTGGGAGTCCATGTTTC 108359 37 100.0 37 ..................................... ACGACATCGGACAGCGTTGCGTCTGTCTTTTTCTCTT 108285 37 100.0 35 ..................................... ATGCGTAAGGTACTCTACGCGCGCTCAACACTTTT 108213 37 100.0 37 ..................................... GACCTCGAAGTCTTGCACTCGTTGACATGTGTCGCGA 108139 37 100.0 36 ..................................... CCTCGGTGAGGAGAACGACCTCACCAAGGATCCCGC 108066 37 100.0 35 ..................................... TCCCATGCTCCTTCCATCGCAGCCAGCGCTGTTTT 107994 37 100.0 33 ..................................... GCCTGGCTATTACTAAGAGTGAACTTTACCTTC 107924 37 94.6 36 ..................TT................. GCACTCCACACTTATCAAGGGTTTTCCTCCACGATT 107851 37 100.0 38 ..................................... TTACCTCTGGGGTCACTGACCGCCTCCCGTGGGCGTGT 107776 37 100.0 37 ..................................... CCAAGAAAAAATGTCCACTAGCTAGCAATACTACGCA 107702 37 100.0 36 ..................................... TTTTCTTAACATGGTACCTTTTTTCTTCATCCTCTT 107629 37 97.3 36 .................A................... GCTTTCCAGATTCTCTTTTGTGAGTTCCATTTGTTC 107556 37 97.3 30 .................A................... TTATGCGCACACCCTCAACGCCGTTGGCCG 107489 37 97.3 37 .................A................... GCGGCGAGAAAAGTGCTGAAGATCAGAGATGATGTTC 107415 37 97.3 34 ..................T.................. GACTCGCTGATGTGATTCCATTCAGTCATGACGG 107344 37 94.6 0 ................................TG... | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 98.9 35 GTCAGAAAGCACCTCGCGCCATAAGGTGCATTAAGAC # Left flank : GGCCAGCCGCCGTGAGCGGCGAAGAATTGAATACGGGCTGTGGCGCAGTTTGGTAGCGCACTTGACTGGGGGTCAAGGGGTCGTGGGTTCAAATCCCGCCAGCCCGACGCATGAAAGTCCCAGAACCCTGCTGAGCAGTGTTCCGGGACTTCCTCATTAGTGCGTGTGATCTGTGTTTGGTCTGTGTTGGGGCAAGACGCTCTCAATGGGCCCTCCCTCTATTGGGCCCTGGCTGCGTAGGATCGTCACTCAGAGTCAGCTGTGCGCCCGTTTCCTGTTCCTCGTGTGCCAAGTTTCTCTCGAACAGGCCGACTTTTCCTTAAGAACGCGTTGAGATCCGGCGGACGAACGCGCTGTGAGCGCTTCGGTGGCGATCACCCCATGACCTGGGTATATGTGCTTTAATGGAGGTGGTGCTGGACGATTCGAGTGGTGCTTTTCGGGTCAGTGGCGATAACTCGGATGTTCTGCCTGGTCACAGGCAGTGTTTTCGGGGTGGA # Right flank : GTGTCGACGATGAGGGAGACGCAGGACACGACACGACCTTGGATCAGAAAGCGCCACGCCCCACGCCTCGGGGACATTCACCCCATTCTCGCAGCGCCCCACACTCAGAGGGCAGAAGAAGCCCTTTGCCGTTCAAAATCCAGAAGGAAGCGTTTCGCTTCGACTCCGCCTCGGTAGCCGCCGAACGTCCCGTCACTTCGGGTGATGCGATGACACGCCTGAATAAACGGCAAAGGATTCGCCGCACATGCGTTTGCGGCAGCGCGATGAGCCTTCGGATGCCCGGTTGCGGCAGCCAATTGCGAATAGCTCATTGTCTCCCCGAAAGGAATCGTGGAAAGAATCGCCTGAACCTCGGCGAAAAAGCCGCTTGACAAACACCGGTCAAGAGGCAGGTCAAAACTTTGACGCTCACCCGCGAAATACTCAGTCAACTGGCGCTTCGCCAAGTCAAGTAGGGCAGTGGCGTCCTCGTGAATCTCCTCGTCAAGCACCTGGGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTCGCGCCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 345905-346053 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB822675.1 Schaalia cardiffensis F0333 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 345905 26 100.0 35 .......................... TGCAAAGCGGTTTCGAGGATCTCAGGCGGCTCAGC 345966 26 100.0 36 .......................... GAATCCCCACCTCATCGCCCACTCCGATCTCGCCCT 346028 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 3 26 100.0 36 CTGTCCCACGCGCCAGCAGAGCACCC # Left flank : GCTGATACCGATCACCGAATAGCCGATGCCTTTGAGCGAGTTCAAGGAGTCGCGAAAGTCGCAGGCTTCCTTTGTGCATCCCGGCGTCGAGGCCTTCGGATAGAAGTAGACGATGACGCCTTTTTCGGACTCCTTGAGGAGTTCCGCCAGGTGAATGGTGCCGTGAGTGGATTCGGCCGTAAAATCGGGGGCGATCTGCCCCACTTCGAGCTTGCTCATGACCTCGAGTCTACGGAGTATGACGCGCACTCACACGCCGAGCATTTCGCAGGCCGACGGTAGGGGTGAGAAGACAGCAGCGGTGAGAAGTTGGCTAGGGTGAGAAGCGGCCCAACGCTCGACAAGCAGGGAGCAGCGGGCAGCGCAGGGTACCGGGAGCACGCACGGGGGCTCTCGCGTGTTCTTCCACGAGGATCACTTCTTCCAAGGCGTGCGGGGCGCATGGGCGGCTTCTCTCGACGCAGGCGCGGGAAATGAATGCGAGGCTCGCGCTTCACCTT # Right flank : CCAGGGAGTCAGCCTCACGCGAGCTGGATCTTGTGCGCTCTCCACGACGCATGCAATGCTGCTTGGGACCCCAACAGTCGTAAAGGAGAACGTCACCTCATGGAGTCCATTACCTCTGTGTTCGATTGGTTCCTTGCGCCGGAAAATCGCCTCATCATGTGGATCGCTCTCGGCTTCCTCGGCATCATTGTGTTGTTCCTTGTGCTCAAGTTTTTCGCCAGGTTCTCGAAACTGGCCTACAACAAGGATTTCCCCGTCGATACCCGCGAAGCGAACCTGCTCGCACTCGGCTTCCAGCAGATCACGAACGCTCAGAACTACTGGAATGACCCGACTGCAAGTTTGTCGAGCACGAGCTCGCTTCACAAGCTGCGCGACATGTGGGGATTGAACAGCAGCAATGACGTCTACGAGAATGTCGAGCGCTTGTTCATGCAGCGCCGTCGACGCGAACTGTGGCAGCAGCTACTCACCCTGCGCGCACAAGCAGCCCAGGCGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCCCACGCGCCAGCAGAGCACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 698079-701901 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB822674.1 Schaalia cardiffensis F0333 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 698079 37 100.0 39 ..................................... CCGTCGATGAGACCAACTACGAGGTTGTCGTAAGCCAGA 698155 37 100.0 32 ..................................... TTTCCGTGTCCAACACAATTATGCTCCTTTCA 698224 37 100.0 35 ..................................... AAGTTGTGAGGACGCATTTCCTGCGTTTCCACATT 698296 37 100.0 36 ..................................... TCACACTTTTTGAACCGTGATCCTGCTCCCATATCA 698369 37 100.0 35 ..................................... TCTAAACCCCACTCCATCGAATCGCGCTTCATCGC 698441 37 100.0 36 ..................................... TAGATACCTTACCTTCCAAGATTTCCTTGTACACAG 698514 37 100.0 35 ..................................... GGTCCGGATTTCGCGCTTGGTCATGCGTTCATCTC 698586 37 100.0 35 ..................................... GATCTCCACCACGTTGTCCGCGCTGTGCGCCCAAA 698658 37 100.0 35 ..................................... GTAGACGGGGATATTGGGGGCGCCGGGGACCCACT 698730 37 100.0 37 ..................................... ACGTGCCGGCGCTTCTTTACCCACTACCCTCACCACA 698804 37 100.0 32 ..................................... AAACACCACAGGATCTCCTGATGGTGTTGGAG 698873 37 100.0 36 ..................................... AGACATTGCGTTAACGTATATGACATCCGCTCCGCT 698946 37 100.0 35 ..................................... GCTGGCATCTGTTAGTCCAGGTAGGCATTAGGGAG 699018 37 100.0 38 ..................................... AAGTTTGGTGTTGCGTGCCATCGGAGTGTCCTTTCTGA 699093 37 100.0 38 ..................................... CACCGAGGAGGAAGAGCCATGGGCACCCTCTACTTCAA 699168 37 100.0 35 ..................................... GCAGTCTCTCCAGTGTAAGTTTCCATTTTTCTTCT 699240 37 100.0 36 ..................................... TGTTCATGAGGCGCTCGAGGTAGCGGTTGATCGCTT 699313 37 100.0 35 ..................................... ACCGTCGCCAATGAGAATTGCTTGAGCGAGCTCAT 699385 37 97.3 35 ...........A......................... TTTCAGCGGGCGCGCTCCTCATGGATGCCGTCTTA 699457 37 100.0 31 ..................................... TTACCACGACACGTTTGCTGCCGTCAGCAAA 699525 37 100.0 37 ..................................... CTGTCTGTCTATCTTTGTAAGCACTAGCCTGATTTGC 699599 37 100.0 34 ..................................... CTCCTAGGATTTGGTGGTACTGCTCCTCCGTGAC 699670 37 100.0 37 ..................................... CTCCGATCTTGTGGAGTTTGACATCGATGCCAATGTC 699744 37 97.3 36 ................................G.... TCGCCTTTGCCAAGCGAATCGCCCCCTTTCTCTCTC 699817 37 100.0 42 ..................................... TCGGTGCGATCGTACCGGGCACCAAACTTCCGGTCCCAGCTC 699896 37 100.0 36 ..................................... TTGCCATTAATAAAGGTGAACCTCACCTTCATTTTT 699969 37 100.0 37 ..................................... ACGTCGACGCCGCCCCATACGTAGGGCGTGCCGATCG 700043 37 100.0 34 ..................................... CGTCGATTTCGACATCATCCGTGCGCACGTCGAC 700114 37 100.0 35 ..................................... ACCTCAAGCAGGATGACCCCCTGCGAGGTTGCTTT 700186 37 100.0 36 ..................................... CCTTCCTATGTAAGGGCTACTTTCACTCTGTTGAGC 700259 37 100.0 36 ..................................... TGATCGACCCGAACCCGCGCTTGCTACGAGCCACGA 700332 37 100.0 33 ..................................... TGTGGGAGATCAGTTGTCGCATGTGGGAGATCA 700402 37 100.0 34 ..................................... ACTTGGGGTGATTGGGAGGCGTATCGGGCTTCGT 700473 37 97.3 37 ...G................................. AGACCCCTAGATCATATAGGTAGCTGTTCACGTCGCG 700547 37 100.0 35 ..................................... GTAGGCGCGCTGACCTGGAGACTCAGGTCATACAC 700619 37 100.0 39 ..................................... AGACTCCTTTAGTTTCGGATTTCGACCGATACAACGTCG 700695 37 100.0 35 ..................................... GGCGGCGGAGCGACCCTCACCTACGCGTACCGCAG 700767 37 100.0 33 ..................................... CGAAACCGTAAGCATGGTCGTGAACCGAGAGAG 700837 37 100.0 37 ..................................... CTAAGGTCAGTCTCGTCGAATTTCGTGGTGATTACTC 700911 37 100.0 37 ..................................... TTCTGGCAGTGTTTACACACCACCGAGATTGTATATA 700985 37 97.3 36 ................................T.... CGTTCCCGTATTCGACATCAAGTGCCCAAATCCTAC 701058 37 100.0 38 ..................................... ACTCCACCAGACGAGTTCGTTCGTGTCATCGCGGCTGG 701133 37 100.0 37 ..................................... CACGACCGGAAAACTTAGCTCAACCCTGGGGGCGACC 701207 37 100.0 35 ..................................... GATCGATCCACATGACCGTGATCTTCCTTTCTCTC 701279 37 97.3 38 .................A................... CCGGGATTTCCAGCGGTTTTACAGAGTATTTTTCTGTG 701354 37 100.0 37 ..................................... CCCTCTTTCAAGGGTATGATGACAGGATTCTTTAGGC 701428 37 100.0 37 ..................................... AATTCCGGCCGATTGCCAGAAACTCAGGCTTGGTATC 701502 37 100.0 34 ..................................... ACTTGGGGTGATTGGGAGGCGTATCGGGCTTCGT 701573 37 97.3 36 ...G................................. GTTGGCGAGCATGCTTTCAAGAGTCTCTTTCGTGAG 701646 37 100.0 34 ..................................... CCAGAGGGAAGCGCCCTTCAGAGATGTTGTCATC 701717 37 100.0 37 ..................................... GGGACGCCAGACCTTCCGGCGATTTATTCACGCTGCG 701791 37 100.0 37 ..................................... CGAGAAAGAAATTCGCTCAAAGCTAAAGGGCGACTTT 701865 37 89.2 0 ......C........................C...TA | ========== ====== ====== ====== ===================================== ========================================== ================== 53 37 99.5 36 GTCAGAAAGCACCTCGCGCCATAAGGTGCATTAAGAC # Left flank : CGTCTTGCGCATCCCGAGCGAGGACGGACTGCCATGCACGTTCAAGTGTTTCAACGGAGGATATTTGAAGGAATACAGGGGAGAGCTTGGTTTCCTCTCCCGTTGTGTTCATGGCGCTACGTAGGCGATAGAGGGGTTGTCCGAAGAAGTAGCCGGCTGTTCGAGGGCGCATCGGCGGCGTCGGTGTTCGTCTTGGTGCACTCTCCATGCGCGCTCCCTTCACTGGGTGTTACTGGGTAGTATCGCCATTTGGGCCTGTCTGTGTGTCCGTTTCGCGCTCCTCTTGCGCCAGATTCCCCGGGAGGAGGCCGACTTTTCCGCAAGAACGCGTTGAGATCCGGCGGATGAACGCGTCATGAGTGCTTCGGTGGCGATCACCCTATGACCTGGGTATATGTGCTTTAATGGGGGTGGTGCTGGACGACTCGAGTGGTGCTTTTCGGGTCGGTGGCGATAACCCGCGCATCCTACCTGGTCACAGGCGGTGTTTTCGGGGTGGA # Right flank : AGTTCCTGGAGCTGCTGCTCCTGGACGGTGACCTCAGAACAGAAAACGCCAGCACACGATAGAAAATGCAGATAGAAACAGCGGGGAATTAAGGCAATCACCTCGCCTCAATGCCCCACCCTGAACACGATCTACAGTCAAGAGCCCTGTTAAAACACAACAAGAGCCCCTGTCACAACACAAGTGGGGCCCGCGGCTTAAGCCGCGGGCCCCACAACCTTTGTGAGCTGTGAAAAGCTACAGCGTCACTCAGGCCATCTTCGTGCCGACCGAGCCGAGGCGCTGGCAGGCCTCGACAACGCGGGCAGCCATGCCGGCCTCGGCCGACTTGCCCCACGAGCGCGGGTCGTACATCTTCTTGTTGCCGACCTCGCCGTCAATCTTCAGCACACCATCGTAGTTGCGGAACATGTGCTCCACGACAGGACGGGTGAAGGCGTACTGGGTGTCGGTATCGACGTTCATCTTGATGACGCCGTTAGCGACCGCGAGGGCGATCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTCGCGCCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1266277-1270211 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB822674.1 Schaalia cardiffensis F0333 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1266277 29 100.0 32 ............................. GCTTCACTTGCCCGTTTAGGGCGGTCATGCTG 1266338 29 96.6 32 ............................T CGCCGGTACCGCAGGGCCGGGGCCGTCATCAT 1266399 29 96.6 32 ............................C TACGGAATCCGGCAGGGGAGAGCCCAACTCAC 1266460 29 100.0 32 ............................. TCTCGCATCGAGACCTTGCCGGTCGTCCGCTG 1266521 29 96.6 32 ............................C CGCGTCGTGCGCAACCGCGCCCTTGGCAAGCG 1266582 29 100.0 32 ............................. ACCTCGTCCCAGATGTTCCAGCGCATCACAGT 1266643 29 100.0 32 ............................. GGTGGCGTGCAGCCGCTTTCGTTGTACGCGTG 1266704 29 96.6 32 ............................T GTTATCCGCGACGACATCGGCATATGTATCGA 1266765 29 96.6 32 ............................C ACATGGAACGGCACCTGGACTCACGTCCTGCG 1266826 29 96.6 32 ............................C GCCGCAGATGCGGCGCCCAGCAACCACTCTCT 1266887 29 100.0 32 ............................. GGTGGCGTGCAGCCGCTTTCGTTGTACGCGTG 1266948 29 96.6 32 ............................C CGGATTTACTGCAACATCCTGGCCCTTCGGGA 1267009 29 100.0 32 ............................. AAGAAGACGGAGGAGAAGCCCGCCCCGGCTCC 1267070 29 96.6 32 ............................C GTCGCAGGCCACAGGCTGTGCGACTCCCAACC 1267131 29 100.0 32 ............................. CCGTCAATGAGGACGGCGGGCGAAACGCCTAG 1267192 29 100.0 32 ............................. CAAGGAAAGACGCCCGAGCAGACGCGATCCAG 1267253 29 100.0 32 ............................. ATCGGGTTGGCGGCGAGGACGGCGGACAGGGC 1267314 29 100.0 32 ............................. GCTCGCTTGGCTTTGCGCGTGTCTGCTGTGAC 1267375 29 96.6 32 ............................C ATCTGGTACCCCATCACCGGCGTCGCCGTCGT 1267436 29 100.0 32 ............................. CGCGAGCGTGGCGGCGGCCTGGGCTTCTTGAT 1267497 29 96.6 32 ............................C TGGCTCACCCCCCAGGTCAGACGCTGGGCTTA 1267558 29 96.6 32 ............................A CGCTCGCGAGAATCGCTGGCCTCAAGAAGGCA 1267619 29 100.0 32 ............................. AGAGCATCGCCGACCGCGTAGTTGTCGGGGTT 1267680 29 96.6 32 ............................C TCCTCAGCGAGGCATACACTGAGCGCCGCGTC 1267741 29 93.1 32 ....................A.......T TGCTTCGTGTTCGCGACGACGGAGACCTTGAC 1267802 29 96.6 32 ............................T GCGATGGGTGATAGAGGCGACGAGCTGGGTTA 1267863 29 96.6 32 ............................C TCGACCCGAAGAACCCCGGCGCGTTCCGTTAC 1267924 29 96.6 32 ............................C AGGCAGACGAGCGTCATATTGCGCCGTTGCAG 1267985 29 100.0 32 ............................. TCGGATCGGAGCAGGAGCGGATTGCAACGCAG 1268046 29 100.0 32 ............................. TGGAGGACGCGCGATGAGTGTAATCGATGTTG 1268107 29 96.6 32 ............................C TCCGCAGTTTCTCGAGTCGTCCAAAGTCTGGG 1268168 29 100.0 32 ............................. GTCACGCAGGCTGAGCTGGCGGCCATGCGAAA 1268229 29 96.6 32 ............................C AGCGAGTTTGCGGGCCTCGTCGATGACGGCGC 1268290 29 96.6 32 ............................C GCCTGTTTCGTGACATCCGTGAGGAAACCGCC 1268351 29 96.6 32 ............................T GCGATCGGCGCCGACAAGATCACCGGCGCACT 1268412 29 96.6 32 ............................C CCCGTAGGAAATTGTCTGACGGCGCAATAGTC 1268473 29 96.6 32 ............................T CATGCGCCGCCTCATGTGCGTTTGGGTACGGG 1268534 29 100.0 32 ............................. GTTGGCCTCAAAGTCATTCTTGACAACATCAC 1268595 29 100.0 31 ............................. TAAGCGTAGTCGCTTCGTGAACTCGGTGACA T [1268621] 1268656 29 96.6 32 ............................C GCCTGTTTCGTGACATCCGTGAGGAAACCGCC 1268717 29 100.0 32 ............................. ATCCGATCCAATTCCCCTCGAAGACCGCGTCG 1268778 29 100.0 32 ............................. AACGACTATGCCGAAGCGGATTCAGCGACGCA 1268839 29 96.6 32 ............................T CCGAGCCGATGCGCTTCGGGAAAACTGAGATC 1268900 29 100.0 32 ............................. TTTTTGCAGGAGCGGTCCAAGCGATCCAAGAA 1268961 29 100.0 32 ............................. GAGCGTGGGACAAGAGTTTCTGGCGTGAAACG 1269022 29 96.6 32 ............................C CGGTCTCGGTCGAACCGGGCGCCGGTAGGGGC 1269083 29 96.6 33 ............................T CCTCCTCAGCGCCTGCGGCCACGAATCCTGAGG 1269145 29 100.0 32 ............................. ACACGGAAATACTTCGCCGCGTAATCAATGGC 1269206 29 96.6 32 ............................T GGCAGATCCTCAAAAACAAAGGCATGGAGGCG 1269267 29 100.0 32 ............................. GTCATTTCGGACTGGCGTTTCTCCGTGTGGAC 1269328 29 100.0 32 ............................. GCCATGATGACGCCGACGGCTGTGGCGATCGC 1269389 29 96.6 32 ............................A GCTGAGGCACAGATCGTTCAGGCGATCATGAA 1269450 29 93.1 32 .....T......................C ACAGGGGGCAGCACGCTCCACCTCGTGCGGGT 1269511 29 100.0 32 ............................. ATTTCGGTGACGATCTCACCGCAAGCGGAGAT 1269572 29 100.0 32 ............................. GCCCCTCACAGCCCCTCACCCCTCCCCTGCTC 1269633 29 100.0 32 ............................. AGTTGGCAAAGTGGGGTTGAATTATGGTGGCA 1269694 29 96.6 32 ............................A GTGGGACATGAGAATGCCTAAACCTTGACACT 1269755 29 100.0 32 ............................. TCTGCGGATCTGCTCTGCAACGCCAATGGGGT 1269816 29 96.6 32 ............................C ACCCGATGCGCGCGCGATCCCCGATACATGGA 1269877 29 96.6 32 ............................C CGGACGAACACGAGGACGGTGGCGAGCATGCC 1269938 29 100.0 32 ............................. ATGCCTTGGATGACGGTGAAGATGCTTTGGAT 1269999 29 93.1 32 .......T....................C GCATACAGGGCTCGGCGCGCATCCTGATAGCC 1270060 29 100.0 32 ............................. CGTTGTGTGGAGGTTCGGCATAGCGCTGGGTG 1270121 29 93.1 32 .........................AT.. GCCTGCTGGGTGTCCGGGATGTTCAGGAACAG 1270182 29 79.3 0 .....TT.....C...TA.......T... | C [1270207] ========== ====== ====== ====== ============================= ================================= ================== 65 29 97.7 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : TCGCTGACCTGAGACTCTGGGACGACCAAGGCAGTCCTGTGCTTGCGGGCGTCTCATACGAGGAGCACTGACAGTCAATGGTTGTCGTGGTGCTTTCGGTTGTTCCTGATTCACTGCGCGGGCACGTGACTCGGTGGTTGCTTGAAATATCTCCTGGAGTCTTCGTCGGGAACCTGAACGCACGCGTGCGGGAACGTTTGTGGACAGTGATCCAGGAGAACATTGGCAGTGGACGGGCGATTATGGTCTTTCATGCGTCGAATGAGCAGAGACTGTCGTTTCTGACCTTGGGTGATCCATGGGTGCCGACCGATTTTGAGGGCCTCACCCTCATGGTTCGTCCGGGTGGATATGACGATGAGAACGCGCCGGAACAGCGGTCAGATCGGGGTGAGGGACACCGTCGTCCCGGTATGAGCAATTTCGAGAAACGACGACGGGCGCGGCGAGGTTTCCCAAGAACGGATCGACAAACGCTCTAAAATCGCAGATCATTAAGT # Right flank : GTCTGCATTGCGCCCTTGGTAGCGAAGGCCTTGGCGATCTGAGGGACCGGCTCGCCATTCGGGAAAACCTGTACAAGCCCTTCGCTCCGCCTTTTGAGATAAGCCTTGGGCACGAGCAAAATCGTCACAACTGCGCAAAGCGCGACCAGATCATGTGTCACCAGGACCTGCACCAGACCCCATTGTTAACATCTGTATCACAGCTAACAACGCCGCAGCCTCTCACGGGCAGGTTTTGCAAAATCCCAACTTCTTCGGAACGTGATGAAATAGGGGGGTGTCATCTGGGTTGAGGGCTTTCATGTCATCGTTGTGGGCGAGGTTGAAAGGCACTTATGGGGTTGATCTGATCCCTGAGCAGCCGCCCGTGCAAGAGAATCGCAGAACCGAGGCGCGGACCCGTCCTTTCGCCGCCCCTCGGACGGGAGGCCGTAGCGCGACGAGCGGGAGTGAGCAGCATTCGTCTGTTTCTTCCGCTGATTCGCGAGTGCGTGAATATG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //