Array 1 1107-1615 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAHZ010000037.1 Legionella londiniensis strain 1477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1107 28 100.0 32 ............................ AGTAAGTAGTCGAGGATATCCTATTTATAGTA 1167 28 100.0 32 ............................ TTTTTGCTTAATCATTTTCGCACCCTCCTTAA 1227 28 100.0 32 ............................ AAACGTCCTGAACAACAGCGCACAGAAATACT 1287 28 100.0 33 ............................ TAGATAAATGGCGTTCGCTTCTGCAAAACGCAT 1348 28 100.0 32 ............................ AAATGAACATCGAAGTCGTGATTCGCGGCGAT 1408 28 100.0 32 ............................ TCAGGTTTTTTTTAGATTACGCCATGTAGTCT 1468 28 100.0 32 ............................ ACATTATCAGGGGTTGTGTAGTTGTATTCCGA 1528 28 100.0 32 ............................ AAACAAAGACAAATACGTTTTGAACAAAATCA 1588 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTAACTGCCGCACAGGCAGCTTAGAAG # Left flank : TCAATCAAAAATGAGGCGATTATTTAAACGTGGTTCGATGACAGTGGGTGATATCAGGCAATACAAAGCTAAAATGTTTGCCAAAAGTATTGATAACCCTTATCTTGAATTGGTAAGTGGATCAAATGGGTATAGATATAGGCGCTACATTGAATTTGGTGAGTTACTCGACCAGCCAGTTTATGGAGAATTTGATCGGTTTGGTCTTTCCAAAACAGCCACTGTTCCCTGGTTTGATTAAATAAAAGAATATGAAATCAGTTAAGTTCGAAAGGTTGAAGTGGAAGTTTGTAATTTGTTCAAATACTTGAGTCATTTTTCTAAATAAGATAGAAATAATAGGTAATTTGAATATTTCATACTTCAAATTACCTATTATTTCATCTAATGTTAATTTGTTATTAAAATCAAATGGATATAACTAATTGGGAAAAATTGGGTAAATCAATTTTTTCCAATTATCTCTTTGTTTTATCAGTTTTTTTATGGATGATGTTACA # Right flank : AATAATAGAAAAGATTGAAAGAGTTACGGTTGAAAGTTGTGTACGGAGATAATTGAAAAAAAGGTTGGGTGGTGTAGCCTCATTAACTGAAGAAGGTTAATGGAAAAAATCCAAAGAGGAGACACCACGATGGGAAACGATACCGTTGTTTCATTCAAAAAACCAGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3504-132 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAHZ010000009.1 Legionella londiniensis strain 1477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3503 37 100.0 37 ..................................... CCATACAAGCTCGCCACGACGTTCTATATATAATAGT 3429 37 100.0 35 ..................................... TCTTAGCTCTATTACCAAACAGAGCTTTCATAGAA 3357 37 100.0 40 ..................................... TAGTAAACCATACAAACATGTATTCGGAATATTTTAAGCT 3280 37 100.0 35 ..................................... TTCATCATTCCTCGGAACATTGCGACTAACTCGTC 3208 37 100.0 35 ..................................... TTCCAGTGCGAATACGTGCCTAAAACCTTTTTTAA 3136 37 100.0 36 ..................................... CCGGTAAGCAACAAAGCGAGCGCGCTTAACTGCTGT 3063 37 100.0 36 ..................................... TATAATACTTAATCCACATAGTAAACTTATTATTGC 2990 37 100.0 33 ..................................... TCTGAAGCACAAGCTTTAGAAAGAGAGTTAGGG 2920 37 100.0 37 ..................................... CATTTCATCATCTGTTTTACTCATCAATTACTCCTAA 2846 37 100.0 36 ..................................... AGGACAAACTCCATTATGAAACTCCATAGCCATAAT 2773 37 100.0 36 ..................................... AAATATTGCATTGTCGGTACAATCATTAATATACCA 2700 37 100.0 35 ..................................... TAATAAACACTCTTCTTAGCTTTAGGAACATTAAC 2628 37 100.0 35 ..................................... GAAATATACTACATTTGTCTGGAGCTTGGTTATGA 2556 37 100.0 37 ..................................... TAGAAAACATACTTGTTACTCCTTGACTTGGCATAGC 2482 37 100.0 35 ..................................... TCTAACTTGGTGTCAATATATCCCAACTCAAACCT 2410 37 100.0 34 ..................................... TTTTGCCTTTGCACCCATCGCACCTTTTCATAAA 2339 37 100.0 35 ..................................... TTCGTTAGAGTTGCTGACCAGGCTGGAACACCGGA 2267 37 100.0 35 ..................................... ACATTTTTAAGAATGGTAGAGGCCATCCCACCATA 2195 37 100.0 34 ..................................... ACCAAAAAACTATTGATATGTTAAACACATTGAA 2124 37 100.0 37 ..................................... CTATTCTACTACTGAACTACCCTGCAATAACTATTGC 2050 37 100.0 35 ..................................... TGCAGTTTTTCAATTCGTCGTTTCAACGAGCTTAG 1978 37 100.0 33 ..................................... ATTGACCGCACAAGTATTTACTCGCCAACCATA 1908 37 100.0 35 ..................................... GGTGGAAACCCTGTAGTGGTGGAACATTTAGAGAA 1836 37 100.0 35 ..................................... TAAAAAACATGCTCACACTATTAAAAAGAATGGCA 1764 37 100.0 35 ..................................... ATGCTCTTGAAAAGTATTATAAAGGCTTACCTATA 1692 37 100.0 36 ..................................... CTATTCTTACTCTCTCCATAACCTGTTCCCCTGTTA 1619 37 100.0 35 ..................................... TTATTAAACCAGTTTTGCAAGCCTTGACTATTAGG 1547 37 100.0 37 ..................................... CAGGTTTAGACATAGCCACACCTATAAGACCGTTAGT 1473 37 100.0 36 ..................................... TGTCTGTATTGTTCATGTTATATGCTCCTATTTAAC 1400 37 100.0 33 ..................................... TAATAACCCGTGTACCAATATCTATCTTGAAGA 1330 37 100.0 36 ..................................... TATTGATGACATTAGATAGACTTCTATCAATTGTGT 1257 37 100.0 35 ..................................... ACAATTTAAGAGCAGCTAGAAATCTTATCTAACAC 1185 37 100.0 36 ..................................... ATCAGCCAGCGGTTGCGCATCTGCAATGGGTATGGA 1112 37 100.0 34 ..................................... CCATTATTTGCGCCGGCCTGGATGGCAAGGTGTT 1041 37 100.0 37 ..................................... TATATGGAATATGCTCCACTATCTTCTCAAGAGAAGA 967 37 100.0 33 ..................................... TGGGAACTGCTCATCCATAAATTCTATTACAGG 897 37 100.0 34 ..................................... TAAATGGGGTCGGTAGCAGCAGCCTGTACAACAG 826 37 100.0 35 ..................................... GATATGTCTTGGTTGTTTTCGTCTCCTGGTTCTGT 754 37 100.0 39 ..................................... TAGTATGTGGAAAAAAGGGCTAAAGACGAACTATAAAGT 678 37 100.0 36 ..................................... ACAACATACTTCTCAGTACCCCCGCCAAAAGTAACA 605 37 100.0 36 ..................................... TTAATATCCAAGACAGGCACTCCAATTTTTTCTGTG 532 37 100.0 39 ..................................... TAGTATGTGGAAAAAAGGGCTAAAGACGAACTATAAAGT 456 37 100.0 36 ..................................... ACAACATACTTCTCAGTACCCCCGCCAAAAGTAACA 383 37 100.0 34 ..................................... TCTCTTCATAGTGGGTCACCCATGGACCAGCGTC 312 37 100.0 36 ..................................... TCGGAAGAAGCGATGCCTACGATATCCCCAGAGGAA 239 37 100.0 34 ..................................... TACGAATTTGCCGGAATCCACACGGCAGGACGTA 168 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 47 37 100.0 36 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCCTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGCTCAAAGTGCTTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT # Right flank : CTTTAATAAAAGGCACTGGTAGGGAGGTAATCCTCCCATTTTTAACTGACGCTAAAAGTAGAAACCTAGGCTGCTAGAGCCAATTTTCTTTTGGGTGGTATACCTCCAATTGCCGAGTTAGGACGTTCATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //