Array 1 6517-7387 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHNN01000027.1 Vibrio cholerae strain 458_02 NODE_27_length_37252_cov_72.1898_ID_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6517 28 100.0 32 ............................ CAGATACTCCGGTGTGAGACGCTGCCCCGCGT 6577 28 100.0 32 ............................ TCACGGCCCCTGATGTCAGGAAGGCGTTTATT 6637 28 100.0 32 ............................ GATATTAGGCGACAGCGCGATACCAGCTCGCA 6697 28 100.0 34 ............................ AATATCAGCGGTCGTTAGGGGTGGCGGAGGCAGT 6759 28 100.0 32 ............................ TATCAGGCTTTCAAGTCGCGTTTGGCATTTGG A [6766] 6820 28 100.0 32 ............................ TTCATCAACCAGCAAGAATTTGCCGAGGTTGT 6880 28 100.0 32 ............................ TTACGGATACTTCCCGTGCGCTCATTGGAAGC 6940 28 100.0 32 ............................ TGCGGCAGACGAGGAACAAAAGGAACGCCACT 7000 28 100.0 32 ............................ AATCAAAATCCGATTAGAAGAACCTCGTACAT 7060 28 100.0 32 ............................ AGAAAAGGCGACCTGATTTACGTGCGCGAGAC 7120 28 100.0 32 ............................ CTACATTCAATGCTGCAACACCAAAAGATCCA 7180 28 100.0 32 ............................ AAGCGCCACCAAGTAAGCCGCAATCTCACATA 7240 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 7300 28 100.0 32 ............................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 7360 28 89.3 0 ..........A..............TT. | ========== ====== ====== ====== ============================ ================================== ================== 15 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTCTCGTATTGTCCACTCTATCAACCCATATCACCATGTCAGTCTTCGAATAGCGACTCAGCACCAATTAGTGGAATAAGTCGGAGTAACACATCTTCCATCACGCCATGCTCAGCAGTAGTAATTTTTTTCGCGGCTCGATCTTTCCAAGATAAGGTTTGAATCAAACTCGCAGCCACTACACTCGGCTTATCAAGATTGTTCACTGGAACTTCGAGAGCTTGGCCGCGAATACTGGTGCTAATCGGACAGCAAATAAGTAACCCTGTTTGCTGATTGTATTCTTTGCTAGAAAGCACAAGAGCAGGACGATATTTGCCGATCTCTTTTCCTTTCACGGGGTCGAAATCTAACCAGATAATGTCATTACGTTGAGGTATGTATGTTGCCATTACTCACCTAGCTCTTTACCGGAAACTACAGCGATTTCATCAGCATGGCCTGTATGAGCGTTCAAACCTTTCAATAGAACCGTAGCGCAAGCAGCGAATACCAAAC # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCTAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 208-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHNN01000038.1 Vibrio cholerae strain 458_02 NODE_38_length_16115_cov_74.607_ID_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 207 28 100.0 32 ............................ TCCGAGTCCCGTCGTCGTGCGCACACTGCCAA 147 28 100.0 32 ............................ CAAAGTTAACGCCAGAGCTGATACCTGGTTTG 87 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : ATATCTTGTGCTACTGCATATCCTAATTCACTGCGTCACGTGACCTTACATCCAGGCTAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //