Array 1 28176-27050 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGGLO010000008.1 Anaerococcus degeneri strain DSM 29674 Ga0454147_08, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     28175	    29	  96.6	    31	............................A	AAATCAATCTACCTTATATATACCAATAAGG 	
     28115	    29	 100.0	    32	.............................	ACGAAACAAGGCTAAAAGAAGCAGGCGTAGAC	
     28054	    29	 100.0	    32	.............................	CTTTGTAAATTCGATTGGCTCGTGGTCACTTT	
     27993	    29	 100.0	    32	.............................	AACGAATAATTATTCAAAAGTAATTAAAATAA	
     27932	    29	 100.0	    32	.............................	ATTTGTGATCATTGTTTCTTTCTGTCGGTCTT	
     27871	    29	 100.0	    32	.............................	CCATCTCCTAAATTCCAAAGACACTTTTCTTA	
     27810	    29	 100.0	    32	.............................	GGAGATATTTCTGCAAAAGAATTCTATACAAG	
     27749	    29	 100.0	    32	.............................	AAAATCAGTAGAGAAAATCAGGCAAGCGATGT	
     27688	    29	 100.0	    32	.............................	GAACGATAGAACCAAGATATACAAATTGTTAC	
     27627	    29	 100.0	    32	.............................	GACGGATTAGACAGGGACGTAGTAGAAGACCT	
     27566	    29	 100.0	    32	.............................	TCATCTGGTGTAATTTGCCCCCAAGGTGTAGC	
     27505	    29	 100.0	    32	.............................	ATAATTTTAATTTTAATATTTGGTTTTCTTGT	
     27444	    29	 100.0	    32	.............................	AACATATTCTTCCCCACCTGCTTCTACTTTTT	
     27383	    29	  96.6	    32	............................C	AAAGAAGTTATAAGCAAAGCGGCTGAAAAATG	
     27322	    29	 100.0	    32	.............................	TTGAAAACTTCGCCAGCTTTTAGCTCTTCTAA	
     27261	    29	 100.0	    32	.............................	TTTTTTCGTTTGCGGGTACGGCGACCCCGAAA	
     27200	    29	 100.0	    32	.............................	GATTTCACGGGTTGGAGCATATACTTGAAACT	
     27139	    29	 100.0	    32	.............................	ACCATCTTGTTACACAAACAAACATTGTTAAA	
     27078	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
        19	    29	  99.6	    32	GTTCTACCCGCACAGGCGGGGATGATCCT	                                	       

# Left flank :   GGGCGATAAGAATCGGCAAAGAAATCAAGGAATACTCTACAATTATGGGGCAGGAAATGAAAATTCCAGAAAAAATAAGGGACCTAACTGGGATAAGCGAAGAAGATATAAAAAAGGGAAAAGATGAAAAAAGGGCTATAAATGAACTTTTACATTTTATAGGAGAGGATACTCTCGTAGGCTATAATATAAATTTTGACATAAAATTTATAAATGAGGCCCTAAAGAGGCAGGAAAAACCTAAGGTTAAAAATATGACCTATGATGTCATGAAATATGTAAAAAACGACAAACTTTTTCTTAAAAATTATAAGCTAGAAACGGTAGTAAAAGAATACGGAATAAATGAAAAAGTGCCTCATAGGGCCCTAGAAGATGCGAGAATAACTCAAAAGTTAATAGGAAAGCTAGAAAAGCTTACAAAAAGACTAGAAAATCAAAGTGAATGAAAACGCTTAAAATTGAGATGCAAATTGGCTAAATAATGGGATTTTTTTAAT
# Right flank :  AAGTGGGAGGATTTAATGGATAAGAAGAATGATGTTATATCTAGTCCTAACCATTATAAGTTAGATGGATTGGATATTGAAGTAATGATATTCTCAGAAGTGTATTGGGTACTGTTGGTTTTCTTAGCTTTTATAAAGGTAATATAATTAAGTATATTTTAAGAGCCAACAAAAAGAACGGGCTAGAAGACTATAAGAAGGCGAGACAATACTTAGATTGGTATATTCAAGAGTTGGAAAGTGACATGGATTGTGATGGTCGGATGTCATATTTATAAGCGGAGGATAAAATGAATAGAGAATTAACACCTGAAGAAGAGCAAGAACTTAGTGAATTGAGTAGGCAATTGGTACGTACAGCACCACCTATTACAGAAGAAATGCAAAGATATTATGAATTGGATGAAAAAAAGTATGGAACTAAGGAGGAACAGGCCGAGGAAATTAGACAAAATCGCAAAAATTTCTTCGCATTACAAGAAAAATTGAGTAAAAAGGTT

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCTACCCGCACAGGCGGGGATGATCCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 90% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-8.60,-9.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.78,4.87   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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