Array 1 110608-111124 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFLB01000010.1 [Clostridium] spiroforme strain An149 An149_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 110608 33 100.0 36 ................................. AACGAAGCTGATTAATTGTTGCGACACTAGTTTCTT 110677 33 100.0 36 ................................. AAGATGCAATAAGAGAAGAGGTTGCACTTGTCAAAC 110746 33 100.0 37 ................................. CCACAATAGGCTTTAGACTTATCAAAACCATAATTAC 110816 33 100.0 35 ................................. TATATTACTTGCTATATGTGGAAAAGGGTTGAATA 110884 33 100.0 36 ................................. ATGCGTGGTAATTATTGGTTTGATAGGTCAATGAAA 110953 33 100.0 36 ................................. AAAAAAGCGACTGAACATGATTATTGGTCAAAAGAA 111022 33 100.0 37 ................................. GTAGCAGCCAGCTACACCGCTGTAGTGATCAATAAAC 111092 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 99.6 36 GTTTATAATCTGATCATTATATGAAATGTAAAT # Left flank : TCCCCATGAGATATTGCATGCTATTTGTTTTAAAGAGGATGTATATTTATATACAAATTTAGCACAAGGAATGTTATTTGTAACCGGAGTTGAGTCGATGAGTAAATCAAGGTATGTTTTTATGTCGTTATTACCAAATATTGTTTTTGGTTTGGTTCCTTATATTATTGGATTAATATTTCCGAATTTGATTTTCTTTGTTGTGTTTGGAATCATTTCAATTAGTATGGGAACAGGAGATTATTATAATACATATAATGCTATAACCCAGATGCCAAAAGGAGCAAAAACATATTTGTATCAATTTAATTCTTATTGGTACATGCCATAATTTAAATAAACCTTCAGTCGATCTTAATTGTGTAAAAACATAGGGAGTACGACAGAATAAATTTAGCAAATAAACAAAATACACATTGTATTTATACAATTAATATGATAATTTAAAGATATAGAGATAATTTAAGATAATTATTTATTTAATTAATACCTGTTAACGG # Right flank : CAGTTTGTTATAAAAAATATGAAAGGAATTTCAAAAGTTTATAATTTAATCAGTGACATCGTGGCTAGAAAGAAAACTATTCTTGAAAGTAAGTGCATGTAAAACAAAGGTTGTACGTCCAATGAAAGGACAATTCTTATGATTTACCTTTTATAAGGACAGCCAAGGGTGGAAATGCAGACTAACAAAAAATAGAAAGAAATGCCTGTATTCAAAGATACAAAAGCATCTAATATAAAAGAAAACATGCAGTTTCAAGACTGCTTTCAATAATATTTAGGAGAGTAAACCAAATAGTAAGAGGATGGATAAACTATTTTAAGATAGGAAGCATAAAGGTATTTCTAGATAAGTTAGGATAATGGCTACGTCATAAGATATGATATATCATTATCAAGCAATTGAAGAAACCCAAAACAATCTATAGAAATCTAATGGTATTAAATACAAAATATAAATGCAGATTTAAGCAAGAAGATATATATAAATGTGCAAATCAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAATCTGATCATTATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 132234-133370 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFLB01000005.1 [Clostridium] spiroforme strain An149 An149_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 132234 31 100.0 38 ............................... ATGATTTTACTTCTTCATTTTGAAATAACACCGTTCTC 132303 31 100.0 38 ............................... TTTAATTGTTCTAATGCATCTTTTAATTTTTCAGGAAT 132372 31 100.0 39 ............................... AAAGCTTTTGTATCAAATCTCATAAAAAAACCACTTTTC 132442 31 100.0 37 ............................... TCTCTAAATTTAATATCTTTATTACCGCCGTTATATT 132510 31 100.0 36 ............................... TAAGTCTGATAAGGACTGTCTCCATAACTTGTATGT 132577 31 100.0 40 ............................... TCGTATTCTTTATTTTTGTATTTCATCTTTTTTCATTTCC 132648 31 100.0 46 ............................... AAACTTCTCTTTTTTTTATTTTAACAAGTTTCATTAAGCCATTTTT 132725 31 100.0 36 ............................... TTTCTGGAGGAAGAGGGGCAAATGGTGACGATGCAG 132792 31 100.0 35 ............................... TTTTGAATCAAACAAAGCTTTTTTCTTTAATAACC 132858 31 100.0 41 ............................... TAATTTCTATTTCAATGCCATGTTTTTGAAAAAAATCTTTT 132930 31 100.0 38 ............................... TTATTGATTATCCAATCTTGAAAACTTTCCATGAATTC 132999 31 100.0 38 ............................... TTATTGATTATCCAATCTTGAAAACTTTCCATGAATTC 133068 31 100.0 38 ............................... TTATTGATTATCCAATCTTGAAAACTTTCCATGAATTC 133137 31 100.0 36 ............................... TAATGTACTCCCATGAGTACCCCTTTCTTTCTTTAT 133204 31 100.0 38 ............................... TCGGTATACCTAGTGCTTTATCGTAAAGTTTATAATAC 133273 31 100.0 35 ............................... GCACATAATGTCCAGCTCCCTTCCTAATTCGTTAT 133339 31 87.1 0 ......................A.....TAT | G [133364] ========== ====== ====== ====== =============================== ============================================== ================== 17 31 99.2 38 ATTAGTTATTGTTCTTATAAAGGATTAACGC # Left flank : ATAATTACAAGAGAAGTTTATAAATTATCTAATTATATTGAAGGAAAAACTGATGAATATAAACCATATATAATGGAGTGGTAAAATGTATGTTATTTGCACATATGATATAACAGAAAAAAGATGTCCTAAAGTAATGAAAGTATTAAGAAGATATATGTTTCATGTTCAAAAATCTGTTTTTGAAGGTGAATTAACACCCGCAAAATTTAATGAGCTTAAAATAAAATTAAATAAAATAATTGAATCAGATGATAGTGTTTTATTCTATTTTGTTTATGAAAATAAAAAAATAAAAAAAGATTTTCTTGGTAAAGAACCAAAACCCACGAATATTATTATTTAGTTTATCGACTATCACCATTTTATCAAGTGAAAATTAATTAATATATTATTAATTTTTGTTTGATAGTCGATAAAATGATAAGTTTTAATACTTGAATTTATTATAAATACAAAGTATTATTAGAATGAATTTAGTATAATTCTAAATTCATTCT # Right flank : TTAATTGTTATAAATTTCTAAGTTACTAAATTTAAGAAAATACGTTAAATAAAAACAAGTCTTATTTAAATTTATGACTTGTTTAATGTGTCTTATTGTATTTTTTAATGTATAATGTAGCTAAATTATTTTGGAGGTAGATTATGAATGAAGTAATTAAAGAATTGTTTGAACGTAAGTCAGTAAGAGTTTATAGTGATAAGATGATTGAAGAAGATAAAAAGCAATTAATTATTGATTCTGCGATTCAAGCACCAACAGCGGGGAATATGACTTTGTATTCAATCATTGATGTTGAAGACCAAGAAATAAAAGAAAAACTAGCAAAATCTTGTGATAATCAACCATTTATTGCTAAAGCACCATTGGTATTAATTTTTGTTGCCGATTATCAAAAATGGTATGATGCTTTTAAATACTATCATGGTAATGAAGAAGTAAGAAGTCCTTCTTATGGTGATTTTTTACTAGCGTATAGTGATGCATTGATTGCTGCTCAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGTTATTGTTCTTATAAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 154693-155151 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFLB01000007.1 [Clostridium] spiroforme strain An149 An149_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 154693 29 100.0 37 ............................. TTCTAGCTGTAGATTTTCAGCTTCATTTGGATCCCAA 154759 29 100.0 42 ............................. AATCTCCAATTTCGCATTGTTGATTTCTGCATCAGAGAATAC 154830 29 100.0 53 ............................. CTAGCTTGGTATGATTATACCAAACCTCATCAACTTCCAATCTTTCGCCGCGT 154912 29 100.0 36 ............................. TTAACTCTGAAAAAAGAAATCTCTTCCTAGTATTCC 154977 29 100.0 49 ............................. TTTACTTTTTTCTTGGCTTTTTCTTTCGTCAACATGTTTATGCCACAAG 155055 29 100.0 38 ............................. ACATACTAAAGCATTTATTGTACTATTAGCCATTGTTT 155122 29 75.9 0 .....GT.........G...A..G...TT | G [155145] ========== ====== ====== ====== ============================= ===================================================== ================== 7 29 96.6 43 GTTGTACCTTAACTTAAAGTGATTGTTAC # Left flank : ATAAGCGTGTTACTAAAGTACGAAAAGTATTTAAAAAATATTTGTTTTCAGTTCAAAATTCAGTATTTGAAGGGAATATAACTGATGGTAAATTAAAACGTTTGAAAAATGAACTTAGTAAAATAGTGGATGTAAATTATGATTCAATTTGTTTATATAAATTACAATCAACTAAATATACTTCAAAAGAGGAGATAGGTGTAGTTAAACATTTTATTAATATTATTTAATTATTGCGGTCAATCTAAATCCAAGGTATATCAAGGGCTTTAAAGGAAAATGATCTATAAAATTGAGTGAAAATCAATAAAAAACACTCAATTTTGCGGTTAATCTTTTTTACAAAAAAGAACAAATCTTTAAAATTGCTCCAACCCGTTGATATATCTATTATTTAGATGATTTAACATAAAAGAGACTGACCGCAAAAAGATGATGAATATTAGTATTTAAGTCATAAAAGACATTATTTACCAATAAAAAATGGCTTAAATACAGTA # Right flank : TGATAAATAAAGTATTTGAATTATATAAAAATAATGAATAGGAGTATATTATGAGATATAAATTATTTTTTAAAATTAATAAACCGATGGTTTTGAATTTGAATTATCATTTAGAATTACAAAGATTTATTTATTTAATGATTTCAAAAGAAGATAAAAGTTATGCTGATTGGTTACATGATCAGGGATTTGGAGATACAAAGAAATTTAAGTTATTTACTTTTAGCAAGATATATTGTCCTCAAAGACAAATAAAGGATAATAAGTTTGTTATGAAAAATTGTTTTAGTTTTCAATTTTCTTGTATTGATAAGAGATTAGATGAAATAGTTTTGAAGTGTTTGAATAAAGAAAAGAACTACATGTTTAACAATCAAAAAATTATATTAGATCGATATGAGGTGCATTTATATAAAGGTAGTGATGATATTAAAATAAAAATGATATCACCAATTGTTGTTAAAGATGCATATGTTGAAAATGATAGAAAAAAAACATAT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCTTAACTTAAAGTGATTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 156309-156551 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFLB01000007.1 [Clostridium] spiroforme strain An149 An149_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 156309 29 100.0 48 ............................. GTTTTAGAATACACTATTGTTTAGAACTCGCACTGGTAATATCCGTTA 156386 29 100.0 42 ............................. TTGCATAGGATTATATCCTGAAATATATTCTATTCTAAAATT 156457 29 100.0 38 ............................. CAGTGCTTAATCAAGTGCAAGCATACCCACAGCATCTT 156524 28 75.9 0 ..................C.-...ACGCA | ========== ====== ====== ====== ============================= ================================================ ================== 4 29 94.0 43 GTTGTACCTTAACTTAGAGTAATTGTTAC # Left flank : TTATATTACAGGATGGCAAGGGATATATGAATTAAGTGGTAAAAGGGAATATTTAGAATTTTTATATTATGTTGGAATTGGAGAACGAAATTCTCAAGGGTTTGGTATGTTTGAAATTATTGAATAGTTTGAAGTTTATAATGATAAAAAGTGAAGAATTATTTGTTGTAATAGTAGATTAAAGTATTTAAATATTATAGAATAAATTTAGAAACTTAATTATTTATCAAAATTTGCGGTCAATCTAAACCTAAGGTATATCAAGGACTTTAAAGGAAAATGAGCTATAAAATCAAATAAAAATCAATGAAATATAGTTAATTTTGCGGTTAATCTTTTTTACAAAAAAGAATAAATCTTTAAAGTTGCTCAAACCCGTTGATATATCTACTGTTTAGACGATTTAACATAAAAGAGACTGACCGCAAAAAGATGATAAATATCAATATTTTAGACATAAAAAACACGATTTACTAATAAAAAAAGGCTAAAATACAGTA # Right flank : ATTGTGTGTGATATGATAAAAGATTAATTGGCTATGGTGTTGTATGATATTTATTTGTGGAAGTAATAAAGAGCATAATAAAAAAGCATAGGTGAGATTCACTTATGCTTTTTGATAAATTTTTTAAGATATTCATAACTGTATTCGAAGTCATAACAGCATTCTTCTAAAGTTATTAAGTCGATTAATGAATAGAATTCATTTCTAAGAGTTGGTTCTAATATGATGAGGTTTACTGAAGAATCTTCGTTTTTACCTCCTAGTGTGATATTAATATTTTTAATATCGTTAAAGGTTAAGCTGAATTTATTTGGTAAGTTAAATTTTTCTTCTTTGATTAAATAAAAACGGAAGGTTGGATAACTGTTGGCTATATTAATAGTTCTGTTTAAAATACGAATAACATCTGTTTTAGAGAAGGGGTTGAGAAATTGGTTGGGAATTTCACTTACTTTTCCAGTATCATAAAAAGACTGTAAGCCAGATTTGGTGAAGTAAAA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCTTAACTTAGAGTAATTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //