Array 1 163403-164625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAEF010000002.1 Streptococcus agalactiae strain iGBS391 NODE_2_length_165771_cov_68.0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 163403 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 163469 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 163535 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 163601 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 163667 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 163733 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 163799 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 163865 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 163931 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 163997 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 164063 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 164129 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 164195 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 164261 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 164327 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 164393 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 164459 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 164524 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 164590 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : CTGGTTATACATTTACTAATCCATCAGCATTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //