Array 1 10450-11802 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLP01000032.1 Campylobacter fetus subsp. testudinum strain 12S04217-1 contig00032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 10450 30 76.7 35 AA...A.T..ATA................. GCGATTTTCTTTAATAAAATTAATCGCCTCGTCTG 10515 30 100.0 35 .............................. CAATTTTTAAAGATATTCTCCCCTAGATTTGATCC 10580 30 100.0 34 .............................. TTAAAAGATAGGAAGCAATTTACAGAGGAAAAAA 10644 30 100.0 35 .............................. ATCTCTATGGCTTTGCTTTCTTTTAATGGATCTAC 10709 30 100.0 36 .............................. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 10775 30 96.7 36 ...............G.............. ACTTTTTTCACTTCAGTTATTGTAGTCATTCCAGGG 10841 30 96.7 36 .............................T TTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 10907 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 10972 30 100.0 38 .............................. TTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATT 11040 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 11106 30 96.7 36 ...............G.............. AAGATTTCTATTAATAATCAAATTTTAGAGGAACAA 11172 30 100.0 36 .............................. GGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGG 11238 30 100.0 36 .............................. CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATAT 11304 30 100.0 36 .............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 11370 30 96.7 37 ...............G.............. TAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 11437 30 100.0 36 .............................. ATTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 11503 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 11569 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 11640 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 11705 30 90.0 38 ......................A..A...T AGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 11773 30 76.7 0 ..........C....AGC....A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 21 30 96.5 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AAAATATAGCTATCTTCTTTATCTGTTTTCTTATCGCTAAAATATTTTAAAAAATGACTTAATTTGTTGGGATTTAACTCAGAATAAGGGATAGAATGCTCAGTTAATAGAGATGAAACAGTGTAACTATAAGTTGCAGTAGCTTCAAATACAACGAAAGAATCTGTAGAAAGTTTAGATATAAATTTAGATATATCCACTAAATTATTTTTTATTTTCAAATGAATAAAATCATTTTCATTTTTTAAAATGCAGATATCTAAAGTTAATTTAGAAATATCTATACCTACAAACATTTAAAATCCTTTTTTTATAAATTTAAAAAGGGGTTTTTTACACTTATATACAGTCTTTTTAAAGACTAAGTTTTTAACCAAAATAGCCCAAACAAGCCAATAACCCCTTTATGGTCTAAACTGTCAAGAAGTCTTTTTAAAGACTAGATATTTGTACAGACCTTACAAGGGATTTTAGCAACTTATTTAACCTTTTTTGCACAG # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [9-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 36-793 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLP01000051.1 Campylobacter fetus subsp. testudinum strain 12S04217-1 contig00052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 36 30 100.0 37 .............................. AGAGCTTATTTCTAAGATAGATATAATAAAGGCAAAA 103 30 100.0 36 .............................. ATGCAAGTGCTGTTGTTATCGCGCACAATGCGCTCT 169 30 100.0 37 .............................. AGCACTATACGTGCAAAGATAAATTTGGAGAGAGGTT 236 30 100.0 35 .............................. TTTTTGGATGATAGTTCTTTTCCACATACAGGGCA 301 30 100.0 36 .............................. TAGCTAACGCTAAATGGGCTAAGAGTTTTTATAAGT 367 30 100.0 37 .............................. AGCACTATACGTGCAAAGATAAATTTGGAGAGAGGTT 434 30 100.0 35 .............................. TTTTTGGATGATAGTTCTTTTCCACATACAGGGCA 499 30 100.0 36 .............................. TAGTTTTTTCTTTCTAGCTCATCATCCAGCCAAATT 565 30 100.0 36 .............................. AGGTGAAAATATTGCTTTTCGTGACTCCACTCGCAA 631 30 100.0 36 .............................. AATAAGTCGTTTTCTAATTCTGTTTTATTTGTTTCT 697 30 100.0 37 .............................. AAGCTTACTCCTAATCCGTTTTGACCGGAATGATATA 764 30 80.0 0 ..............G.T...AA...A...G | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 98.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TCACTCAGGCTTTCATCTATCATTTTAAATTTCCTG # Right flank : GTCAAGACTTTTTTAAGAAAAATAACAAATATAAGCAAAATTATTGTATATTTTTTAATAAAATATCAATCTTACCTTTAATTTCTCTTAATAGCCTAAAACTTTCAGCAGCGTTTTTTTCGAAATCCTCCAAACGGTCAATTCTATTCTCAAGTATTTTTATCTTTTGATTTATTAACCAGTTTAAAGCTGTTAAAGCCAAGACCACTATAGTAGTCATAGGCTCTAAATAATTTAATATATCCATTACGGAGCTACAACGCCACCAGCTGCAATTTGAGCAGTAAGACCTATAATATAAACTTCATCAAATTTTACGTTGTTGAAAGTTTTGTTTAAAAGGGCTGTTCTTATTTCATCCTCGTTTAAATTAGCCCTAGCAGAAAACTGGAAAGTATGTTTAAATCCAGCTAAACTTTTCCCAGTTACAGTTACAAGGTTAGAACCACTAGCTATGCCTTTATCAACAGTGTCCTTCGCCTGATAAATTTCATAAGTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 38-1318 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLP01000055.1 Campylobacter fetus subsp. testudinum strain 12S04217-1 contig00056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38 30 100.0 37 .............................. TCGTTTAGTTTTACTACCTCTACACTAGCTTCTTTTT 105 30 100.0 35 .............................. AATTGATAATCTTAAAATCTCAAAGCGGAGCCCAT 170 30 100.0 35 .............................. TTTGGCGTGGCGGTCGTTGATGTGTTATTTTTTCT 235 30 100.0 35 .............................. TTGCTAAGATTACCATTAACATTAGTATCAGCTTT 300 30 100.0 36 .............................. TCTATCCATTCTATCCATTGTGGCGTTTGATAGTTT 366 30 100.0 37 .............................. GAAAACTCGAAAAAGAAGACGCAGCCAAAATTATAAA 433 30 100.0 36 .............................. ATATCTTGCATACTAGCGCACATCTGAAAATGCTGC 499 30 100.0 37 .............................. TGCAAATAACTTTTTGGAGGTTAGCGTAGTAATAGAT 566 30 100.0 36 .............................. TTGGGATAACTCCATATCCCCTATGTTGCTGGATAA 632 30 100.0 35 .............................. TAAAGAAGCGTTTTGCAGGTACGCCCAGCATACCT 697 30 100.0 35 .............................. CTTTGGGCTAAACAAACCCCAAAAAGAGCTGAGAA 762 30 100.0 36 .............................. ATGACAAGATAACCTTTTTTAGGAGATATAAAATAA 828 30 100.0 35 .............................. GATCCAACACCAATTTTACGTTTCTGGTTTATCGA 893 30 100.0 36 .............................. TACTCATATTTTTAAATTTAGACATTATCTGTTCTA 959 30 100.0 36 .............................. TCTTTATTATACAGTCACCAAACATATCTTGAAAAT 1025 30 100.0 37 .............................. ACAGTATCCTTTGCTTGATAAATTTCATAAGTTCCCT 1092 30 100.0 36 .............................. CCGATATTTGCACCGCTATCTTTTAGCTCACTTATT 1158 30 100.0 35 .............................. GCAGTTACGCTTAGTGTAATAAACAAGCCTGCAGG 1223 30 96.7 36 .............................T AGCTCATCCCCAAATCTTTCAGACAATCCTCTTATT 1289 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.8 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : ACTTTGCTAGCGCCAAGCAGTGCCAAACTTTATAATAG # Right flank : CTTGTCGAACGCCTATTCTACCACTTCTAAATAACCAACTTGAAAATACACTTTATAAAAAAGCTGAAATTTATTAAACTATTTTTCAAATGGTAAATTAAAATAGTAAAAAATATAATTTTGAAAACTTAGGCAAGAGGTTATTTATATAAGATATATATAAGTATATATAGTATATAATAAAATAAAAAAGGATAAACTATGAAAAGCTACTGCTTGAAGTTAGATGATGACACATTTGCACAATTAAATCAAATCGTAAAAAATAGCAAAACAACTATGGCTGAATTTATCAGAAATGCACTAGATCAAAAATTAAAAGAAACCAAAGGTTCGCTATCATACAGGCTAACTACGCTTAGTTACTGCGATAAAAAAGAGAGCGACGAGATACTAGATAGTCTAAAACATCTAAACGACGACGAGTTAAAGATAGCCAAAAAAGAAACCATAAACTTATGAAACTAGAAATCAACTATACCAAAGTTTCTATAAAGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1160-735 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFLP01000069.1 Campylobacter fetus subsp. testudinum strain 12S04217-1 contig00070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1159 30 100.0 35 .............................. ATTCTTAGATACTCTTGTAATTGGTGTTCGTTGCT 1094 30 100.0 36 .............................. TATTCCCATTTAGACATACTAGATCCACTTTGTATC 1028 30 100.0 36 .............................. TAAAAAAGCATAGCTAGGGCGTCTAGCTCATCCGGG 962 30 100.0 36 .............................. AGAATTATACTTAATCACTCAGGACCTAAGTCTTGT 896 30 100.0 35 .............................. TTGAATTTTCTAAAAATACCTTCCGGCCATTTTTG 831 30 90.0 37 ......................A..A...T AGCTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 764 30 73.3 0 ..........A....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 94.8 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : AAACCCATAGTGGGAGATGACTTTGCGAAGCTATCTTTAA # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTAAAATTACTAAAAATACATCTGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACACACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACGGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //