Array 1 22345-19557 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAJ01000007.1 Rodentibacter ratti strain F75 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22344 28 100.0 32 ............................ TTGATAAGGGATACCTAACAATAAACGCATTA 22284 28 100.0 32 ............................ TTGATTCACAGGGCAAGATGTTACCTATGATT 22224 28 100.0 32 ............................ ATCACTGACTTTTTCAATACAAATTGGATATA 22164 28 100.0 32 ............................ TTACTTGAAAAACTCACTGGCAATCTTAAAGA 22104 28 100.0 32 ............................ AACGAAAACCCGGCAAGCCCTGCGCCGAAAAT 22044 28 100.0 32 ............................ AGACTTCTCAAGTAAAATGACTTTTTCAGCAA 21984 28 100.0 32 ............................ ACATTAAAGGCTAAAGACACCATGGCATCATA 21924 28 100.0 32 ............................ ACGCATAATCGGTAAGCTAAGAGTGATGATTT 21864 28 100.0 32 ............................ TATCTTAGCTTGAAAAAATTGTTTTACCACAT 21804 28 100.0 32 ............................ CAGTTAAACGGCAAAGGGTCGAATAACTAAAA 21744 28 100.0 32 ............................ AAAACGGTTCTCACATAGTGGGGATTTCTTAT 21684 28 100.0 32 ............................ TATGATAATATGCGTTAAGATAGTACAAATAA 21624 28 100.0 32 ............................ TTGCGATGTTGGAATTAATGGCGGAAAGCGGT 21564 28 100.0 32 ............................ ATAGGCATAAGCCCTTGAACAAAGTTATTGAT 21504 28 100.0 32 ............................ ATAACGCTAATCCACTTATTCAATCTGTTAAA 21444 28 100.0 32 ............................ TCGATGAAACACGTATGCTGAAATACGTAGAT 21384 28 100.0 32 ............................ TCAAGCATCGGGAGGGCTACATAAACATCCGG 21324 28 100.0 32 ............................ TAATCAAGAACAATTAGGAAAAAAAGAAGTTA 21264 28 100.0 32 ............................ TAGCAATAACCTCCCTCACTTACCAATTGAAA 21204 28 100.0 32 ............................ TCGATAATCAGGGTTTACCTCTTCGCCTGATT 21144 28 100.0 32 ............................ AACCGTACAACTGGCAACCACTTTGTCTGAAA 21084 28 100.0 32 ............................ GTAAACCCCTTGCAAACGAGATTTCACATTAG 21024 28 100.0 32 ............................ AACTCACACAAACACTGAAAGGCGCAATCTAT 20964 28 100.0 32 ............................ ATTTACCCACTTTGTCACAGCCTGTTGACTTG 20904 28 100.0 32 ............................ AACCACCAAATTCGGGAATATACAATAGAGAT 20844 28 100.0 32 ............................ ACAATCAATCCCACAACCACATCAATCATTCG 20784 28 100.0 32 ............................ TTATTGCATCGCCGTATTGGCTAAATATTCAC 20724 28 100.0 32 ............................ AACAGAATTGCGACCGGATGTGGATTGGGCAA 20664 28 100.0 32 ............................ GTTTTAACGAGATGATGAACCGCTTGCGTGGC 20604 28 100.0 32 ............................ ATTTTTTCTAAGATAAAAGTCTTTAATTTACT 20544 28 96.4 32 ................A........... ACATTCGCAAGGTTCGCCTTTCAATTCTACTT 20484 28 100.0 32 ............................ TTTTATTACGCTCCGTGCCGGCACAACAAAAA 20424 28 100.0 32 ............................ ATTTCGAGTTCCGCCACACGGTCGTGCAAAGA 20364 28 100.0 32 ............................ CCAAAGGTAAACACATTCCGCAGTTGCCATTT 20304 28 100.0 32 ............................ GATATTAATCGTAATCCTTATGTTCGCAAGCT 20244 28 100.0 32 ............................ TTATTTGAACGGTGATGAAGCGGAATGTGCTG 20184 28 100.0 31 ............................ GCTTTTTATCTGCGATAGGTAGCTCGCCTGC 20125 28 100.0 32 ............................ ATTTACCCACAAGGATAATTATGGCTTCACAA 20065 28 100.0 32 ............................ TTGTGCGGCATTAATTGTAATTTGAACATTCA 20005 28 100.0 32 ............................ TCCTGATTGTTCATCGGTGTAACTAAATGACA 19945 28 100.0 33 ............................ CTACCCGCCCCTCAAGTTGAACATTACTAAAAT 19884 28 96.4 32 ....C....................... AGCACCTTGGCAACATCGCGTGCTTGGCTTGG 19824 28 100.0 32 ............................ TTGACAAAAACCGCTACAACCGTTTCATTTAA 19764 28 100.0 32 ............................ TCTACTCTCTCCCCGGCTGCCTGATTCAAGGC 19704 28 100.0 32 ............................ ATTTGCCGGCGTTCTTTGGCTCGAACGGTGTT 19644 28 100.0 32 ............................ ATAAGTTTTGCCTGAACCGCTCGGACCTGTTA 19584 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.8 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : TTTCACCGCTTGCCCGTCGCAACGATGAAAACCCGGAGGTTACTGACCGTTTTGAACTATTCATCGGTGGACGTGAAATCGGTAATGGTTTTTCAGAATTAAACGATGCGGAAGACCAAAATGAACGCTTTGACGCACAAGTTGCGGCAAAAGAAGCCGGAGATGATGAAGCGATGTTTAAAGATGAAGACTTTGTAGTTGCACTTGAACACGGATTACCACCAACTGCCGGTGAAGGCCTAGGAATTGATCGCCTTGCAATGCTTTATGCAAATGCACCGTCTATCCGTGATGTAATTCTCTTTCCCGCCATGCGACAAAGATAAACCAATTAATCTAAATAAAGGAAGCCACTTGGCTTCCTTTTCCCCCCTTTATTTTTCCCTTACAAAATAAACAAATAAAAACAATAAGTTATATATAGCCTCAAAATTTTCCTTTTACTACTAAATTTTTTAGAGAATCCTTTATTTGTCTGCATTTTTCATCTAAAATCTCTA # Right flank : ATCAAATTATTTTTTCATTATTTAAGAGGGTATTTCACCGCTGAGTTAGCAGTTAGCTGTCTATCCAAATAGACATGTTTTCATTATCAAATGGGCTGATTTTCTATAAAATCTAAATAATTTTGTGATAAGTATCACAATTCTAAAACTTTTCAATTGACTATTTTCAAACCTAAAATAAAATTTTATTAAATAAAAAAAACATTGGACAAAAACCATGATAAACAAAACATCAATAATAAAAGCAATTAAGCAATTTCTTGTTGAGCAAAATTTAAAAAAATCAGGAAATGATAGGAAAAAATTAGAAAATACCAATATTTCAACAACTGAGAAAGAAGAGCTATTGAGAAAAATTGCCGAATATGATGAGAAATATCATTTTAATATTTGGGTTCCAAATGCCGCTCTTGTTTTAGCAAAACAGCTTTATTTTGGCACTCATATTTCTCGTGGAATTCACTCATCTTCAAAAGGGGATAATGTTAATTTTCAACCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //