Array 1 3826-1878 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCT01000382.1 Parabacteroides merdae strain BIOML-A23 scaffold382_size4223, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 3825 32 100.0 33 ................................ CGATATTCGGGAGCAGCCTGCAACATCACCTTG 3760 32 100.0 39 ................................ GCAAATGCAGGCCGTTTGTGATTTCGGCCCAACCCTCTT 3689 32 100.0 34 ................................ GCAATGCCTCCAGGAGACGGGAGCCAATCAGAAG 3623 32 100.0 34 ................................ TAATCGGGGTACAACAACTCGAGAAATAGGTAAT 3557 32 100.0 34 ................................ CAAATAGAGCGACCAGCCTTAATACCAAAAAAAC 3491 32 100.0 35 ................................ TCCGAAGGTGGTGCTTTATCTGAATCCGGTTTGGG 3424 32 100.0 33 ................................ AACCTCAAACATTTAAGTAATGGCAAACGTTTT 3359 32 100.0 35 ................................ ACGACGCCGAGCTTGCATAATACGACGTTTAGCAG 3292 32 100.0 32 ................................ CGTCACCCGGCAATGTTGCGAAAAAAGTACTA 3228 32 100.0 35 ................................ CGTAAATACGGGAGTAATACGACCAAGGTCAGTAG 3161 32 100.0 34 ................................ ATCAGAAGGAAGTCGCTTAACGACAACTCGATGA 3095 32 100.0 33 ................................ AGGATTGAAAGAATCAAGACGCTCGCGATAAGT 3030 32 100.0 33 ................................ TTAAGGCCCAGGTGTCTGAAACTTGGTCTCGTA 2965 32 100.0 34 ................................ CAAACGACACAGTTACCATTAGACTCATAACCAG 2899 32 100.0 36 ................................ GATGATTGCTCATTCTTATCCCCTCATGCCATCAGT 2831 32 100.0 34 ................................ CTTATAGCTAAATCCACGGAATTGATTAAGCTCA 2765 32 100.0 34 ................................ CTTAATGGTAAAAAGACATATAATCGTTGGATAA 2699 32 100.0 33 ................................ GCTATCTCGCGTGTGGCGAGTATGGCTCTAAAA 2634 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATG 2569 32 100.0 34 ................................ TTGAAAAAACATTTCGCAAACAACTGAAAAAGAT 2503 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 2437 32 100.0 32 ................................ TGTTATGTCGCGTTTAAAGGATGCTGGTTTAA 2373 32 100.0 32 ................................ TAAAATAGCTAAAAACAACATTTGGGATATGA 2309 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 2242 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 2178 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 2112 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 2045 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 1980 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 1909 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 30 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : CCCTAGCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGG # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9881-8925 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCT01000140.1 Parabacteroides merdae strain BIOML-A23 scaffold140_size15612, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9880 32 100.0 34 ................................ TAATGGGGGAACCGTTTTACAAACAGCCAATATA 9814 32 100.0 33 ................................ AAGAGAAGGATTGCCTAAAATCTCATCTCTACG 9749 32 100.0 34 ................................ ACGACTGATTTAGGCCGCATTACTCCGGTATTTA 9683 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 9618 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 9551 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 9485 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 9420 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 9353 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 9288 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 9223 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 9156 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 9088 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 9022 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 8956 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 99.0 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TATTTATACTTTAACAGAACGTTTGGGTCGTACCTTATATAGGTACGTGGATTGAAACCCCCTGAACTTAAAGTTGATGCGGATAGAAATACGTCGTACCTTATATAGGTACGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATAGGTACGTGGATTGAAACAGAACCAATGCTACTGTAGATAAAGTAAGAATT # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10950-10257 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCT01000140.1 Parabacteroides merdae strain BIOML-A23 scaffold140_size15612, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10949 32 100.0 34 ................................ TATGAAAGAATATACCGTTATATGTTTTATAACA 10883 32 100.0 33 ................................ AGGAAGGTGGTGCGTTAAAGCCGTCCGGTCTTG 10818 32 100.0 34 ................................ TTGACATCACCAATTTTATTAAAAACGTTTGCCA 10752 32 100.0 35 ................................ CCTTTAATACGACATACACACCACTACCTTGAAGA 10685 32 100.0 35 ................................ ACGGCGACGAGCCTGCATAATACGGCGTTTAGCAG 10618 32 100.0 34 ................................ TGCCAATTAGAATCAACACGAGAAACGGGTATGC 10552 32 100.0 34 ................................ TTAACAATCGCCGTTTTGATCTCGAGTGTGAAGA 10486 32 100.0 34 ................................ CTCTGGTCAGAGCCCTATGGATCGCGTTTATATG 10420 32 100.0 34 ................................ AATGAATATATTTATACTTTAACAGAACGTTTGG 10354 32 100.0 34 ................................ CCCCTGAACTTAAAGTTGATGCGGATAGAAATAC 10288 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 11 32 100.0 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TATGCCTTTTATTGCCAAAGCGTCGTACCTTATATAGGTACGTGGATTGAAACCAAGCCTTGCAATCTTTATTACAACCCTTGGAACGTCGTACCTTATATAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATAGGTACGTGGATTGAAACAGAACCAATGCTACTGTAGATAAAGTAAGAATTGTCGTACCTTATATAGGTACGTGGATTGAAACTAATGGGGGAACCGTTTTACAAACAGCCAATATAGTCGTACCTTATATAGGTACGTGGATTGAAACAAGAGAAGGATTGCCTAAAATCTCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 11825-11397 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCT01000140.1 Parabacteroides merdae strain BIOML-A23 scaffold140_size15612, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 11824 32 100.0 33 ................................ ACGAACATGAGCATAAGCTTCAGCCCATTTTTT 11759 32 100.0 34 ................................ TCAAAACTACGGAACATGATAAAGTTGCGGAGAG 11693 32 100.0 34 ................................ AGGCATATTCAAAGCATCATAGCGAACATTAACG 11627 32 100.0 34 ................................ TCGCCATCTATTGCGCTCAATGGAGAGGGTAATA 11561 32 100.0 35 ................................ ATTTTTGTTTGGATCGGGAACATCATCGGCATAAA 11494 32 100.0 34 ................................ TAGAGATCTCCTGTATGCCTTTTATTGCCAAAGC 11428 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 100.0 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : CAAGCCTTGCAATCTTTATTACAACCCTTGGAACGTCGTACCTTATATAGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTACCTTATATAGGTACGTGGATTGAAACTATGAAAGAATATACCGTTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //