Array 1 64057-63417 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAE01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B4381 NODE_4_length_177514_cov_77.250695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64056 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 63995 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63934 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63873 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63812 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63751 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63690 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63629 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63568 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63507 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63446 29 96.6 0 A............................ | A [63419] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81803-80189 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAE01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B4381 NODE_4_length_177514_cov_77.250695, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81802 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 81741 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 81680 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 81619 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 81558 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 81497 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 81436 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 81375 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 81314 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 81253 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 81192 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 81131 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 81070 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 81009 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 80948 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 80887 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 80826 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 80765 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 80704 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 80643 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 80582 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 80521 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 80460 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 80399 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 80338 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 80277 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 80216 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //