Array 1 3642064-3639165 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060730.2 Salmonella enterica subsp. enterica serovar Albany strain R17.5974 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3642063 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 3642002 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 3641941 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 3641880 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 3641819 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 3641758 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 3641697 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 3641636 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 3641575 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 3641514 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 3641453 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 3641392 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 3641331 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 3641270 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 3641209 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 3641148 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 3641087 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 3641026 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 3640965 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 3640904 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 3640843 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 3640782 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 3640721 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 3640660 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 3640599 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 3640538 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 3640477 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 3640416 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 3640355 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 3640294 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 3640233 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 3640172 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 3640111 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 3640049 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 3639988 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 3639927 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 3639866 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 3639805 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 3639744 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 3639683 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 3639622 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 3639560 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 3639499 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 3639438 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 3639377 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 3639316 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 3639255 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 3639194 29 100.0 0 ............................. | A [3639167] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3660601-3658621 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060730.2 Salmonella enterica subsp. enterica serovar Albany strain R17.5974 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3660600 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 3660539 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 3660478 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 3660417 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 3660356 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 3660295 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 3660234 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 3660173 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 3660112 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 3660051 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 3659990 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 3659929 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 3659868 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 3659807 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 3659746 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 3659685 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 3659624 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 3659563 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 3659502 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 3659441 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 3659380 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 3659319 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 3659258 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 3659197 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 3659136 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 3659075 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 3659014 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 3658953 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 3658892 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 3658831 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 3658770 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 3658709 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 3658648 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //