Array 1 385-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGJA01000328.1 Escherichia coli strain sc14-186 NODE_329_length_384_cov_0.957198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 384 26 89.7 32 ---.......................... AGATCACACTTACCCTGCAAAATCTTAATGGG 326 29 96.6 32 ........A.................... ACAATCACATATACGACGCGAGACGGAGATCG 265 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 204 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 143 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GATAACAACGACACTCCGGCATATATAAAGGCAGTGTTCCCCGCGCCAGCGGGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90414-89104 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGJA01000015.1 Escherichia coli strain sc14-186 NODE_15_length_115334_cov_79.0778, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90413 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 90352 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 90291 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 90230 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 90169 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 90108 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 90047 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 89986 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 89925 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 89864 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 89803 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 89742 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 89681 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 89620 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 89559 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 89498 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 89437 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 89376 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 89315 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 89254 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 89193 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 89132 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGAAGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1964-897 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGJA01000017.1 Escherichia coli strain sc14-186 NODE_17_length_110721_cov_78.2246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1963 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 1902 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 1841 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 1780 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 1719 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 1658 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 1597 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 1536 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 1475 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 1414 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1353 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1292 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 1231 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1169 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 1108 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 1047 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 986 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 925 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //