Array 1 23645-23189 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYTX01000011.1 Bifidobacterium pseudolongum subsp. globosum strain 112206 Contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23644 29 96.6 32 ............................C GTGGTTCGTCGGCAAGGACGCCGCAACAATCC 23583 29 96.6 32 ............................T TTGACATCGCCGCAAAACACGGCGACACCGAG 23522 29 96.6 32 ............................T TACACCATCATCATCTAACCCGAAAGGAGGTC 23461 29 100.0 32 ............................. TTCAAAGGTGATCGCTTCACATTGCGTGACGT 23400 29 96.6 32 ............................A TCGGGGTGACCGATTACGCGGACAACACCCCA 23339 29 100.0 32 ............................. ACGCGAGATGACCGCCCGTAATATCACACAGG 23278 29 96.6 32 ......................G...... TAGTCGCGGCGGATCATGCGTGCGCCGATGGC 23217 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : CAGGCTGGGCACATAGACGGTTGCCGCGGGTTCGACTCCCGCCCCGGCCACGACACCAACATTCGTTGGGCGGCGTCACGCGCACGCCGAAAACAAGCGCGGCACCACGGTCACGATGACCGCATCATCGGCAAACACACTCTCATTTTGGAGGAACCATGTCCATCACACGCCTCAACCCTATCCGCTGCATCGTGCAACCGGACAACGAGCCGGCAGGCTCCGGGACGGAAGACGAACCGAAGGAAAATGAGCCGCGTTCGCGTGAGTACACGCAGGCCGAGATCGACGAGATCGTCGTCAAACGCGTCGCCCGTGTCAAGAAACAGTACGGCGACTATGAGGACATGAAGAAGAAGGCCGCGAAACTCGATGAGATCGAGGCGGCCAACAAGAGCGAACTCGAGAAGCTCACCGAGCAGAACCAGAAACTCGCAGCGCAGCTCGCCGAACGTGAGCATGCGGCGCTCATCCAGGCGGCGTGCATCAAGCACGGTGTG # Right flank : TAGAGGTTGTCGCCGCTTAATTGTATCCACCTGTTTGCCCCGCGCCGTTGTCGCCGTTGTCTAAATGAAAGTGCAACACTGTTGTCAGGCTTGTAAGTGTAGCAGTTCGTCAATGAAGGCTTCGGCTGGTCCGGGTCAAAATGCACCTACCACTCTTATCGTCTGTTACCGCCTTCTGGGATGGCTGCAGTTTCTGTTTTTGCTACGGGTAGTGTTCTTTCTGCTACGGGTAGTGCTTTTCTGGCGCACTCGTCACTATGATCCGCCATATTTCAACGATTGTAGGTGGAGGTTACGCGAGGAACCACTACCCGTAGCGGGAGGAGCACTACCCGTAGCGAAGAAGGCACTACCCGTAGCGGTGGCAGGACCACGGCCATGTCGAATTCGCTGTTTATGTCACCCGCACGGCTGTTGGTGTCGATGGTCAGACATCGACAGCCATGCGGGACGCGATTATTGGACTCCCGTGACTGACCTCAGCCATCAACTACCATCTC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26028-25633 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYTX01000011.1 Bifidobacterium pseudolongum subsp. globosum strain 112206 Contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26027 29 100.0 32 ............................. AAGGGAGAGGGGAATGTGGACACGATGGCGAG 25966 29 100.0 32 ............................. TTTCCTACCGTTGTTTTTCGGTGTGGGCTGAG 25905 29 100.0 32 ............................. GAGGTTACCTCACTTGGGAACAATCCAGCACA 25844 29 100.0 32 ............................. TGCGCCTGATGTGGCGACCGTGGACACGGCGG 25783 29 100.0 32 ............................. ATGCTCAAAACTGCCGCCACGATCGTAACGCT 25722 29 100.0 32 ............................. GAATATCTGGGCGATGATGTGTACGGCCGCTA 25661 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : CCCACACTGCGGAAAAATACTGATGAGCCTGCTGAAAAGACATTGAAGCAAAACAGTAGGCCAGAACACTTCTTCCCGTCAACAGGAAACGGCTCGCTCTTGTGTCGAAAGGAGCGGTCTCGGAGGCCAATTGCCGATAGACCTCGGGATTGAGCATGATGAGGTCGGCGGCCATTTCCGTATCG # Right flank : GCCTGCGCCTACTGCACGATGATCGCCTCCAGAGGGTTCGATTACCATCGTTTGGAAACCGCGAAAGCTGCTATGCACGACCACTGCGGCTGCCAGCCGTGCCCGCAATGGGACGCGAAAAAATGCTATATTTCCGGCTACGACGAGGACGCCTTGCGCGACCAATACAAGCAGGCTGTGAAAGCGGTGGACAAAGACCGGCAAGCGTATCTGGACAATCTGCACGCCAACGGACGTGAGAACGAGATCCTCGAGGTGATGCGCCGACAGCACCCAAACGAGTACACGGACGGTGTGCATGGCTATAGTCCCGACCGCAAGGACCGCAGCAAGCAATCCGTCGGCGACCTCAACCTCGCCACATGGGCCGACCACCGTGCATCCTTGGCTGAACGGTTCATCGCCGCCAACAACCCGGACTGGAAGCTTCCGCCGGAAAAGCCCACAGAGGTACCGCAATGGTGGCGTGACGACCCTGACCTGCCAGAACTGACCGTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //