Array 1 355-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMS01000027.1 Lentilactobacillus buchneri strain S50 NODE_27_length_4709_cov_32.493307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 354 37 97.3 30 .................................C... CCCCAATCTTTTGCGCTTTCGTCATTCGCC 287 37 100.0 29 ..................................... AAACAATTGGGTTGGTTTAATATTGAATT 221 37 100.0 29 ..................................... TGCAAGAATCAACAGGTTTCAGTCATCGC 155 37 97.3 29 T.................................... CTTCAGGAAAAGGAATCAGTTCAGCGGTT 89 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================== ================== 5 37 98.9 30 GGTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TCAGCGATGGTGTCAGTGACAAGTATAATTCTGGCATTTTTAAGCAATTAGAGGCTGTGTTGACTGATGATCAGCGTAAATCGATAACTGATATTAATAATCAATTGTATACGGTCGTCCAGCAGTGTTTGTTTATGATCGACTTACCTCTGGAAGTCACTTATGATTGGGATTTAAAGAGGCTGTTTAAATACTGTAAAATTCATTTTAACGCTGATACCATGCTGAATCCTTATGCTATAATTGAATCAATTATCAAAATTCATTTAGAGTGTGGATTGAAGTCGGCTGTTGGTTTAACTAATGTCGCTCATTATCTTAATCAGCAGCAATTAATTGATCTATCCAAGCTCACAAGTTCCGCGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACCAATTGCGACTTTTACTACATCGACGAGGACTTTGTTGATTGGCATTTATAATGCATTAAAATTCGGTTATAAAAAATC # Right flank : CTTCCCGTGCACCTTTTTCGCTGCTGTAAAAGTTTTAGAAGGATGTTAAATCA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 22-850 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMS01000016.1 Lentilactobacillus buchneri strain S50 NODE_16_length_26746_cov_30.725487, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 22 36 100.0 30 .................................... TTCCCGTGCACCTTTTTCGCTGCTGTAAAA 88 36 100.0 30 .................................... ACGGGGGTGGCTTTTTGTATGCCGCAACCC 154 36 100.0 30 .................................... CTGAAGATTATTTGCTAATGATATAATATG 220 36 100.0 30 .................................... ATTGATGGATGGTGGTCAACCATCTGTCTT 286 36 100.0 30 .................................... TTGGCAGCACAAATCAAAGCATTGACACCG 352 36 100.0 30 .................................... TATCGAACAATAAAAGGCGGTGTAATTATG 418 36 100.0 30 .................................... GGAAATCAATTGGAGGGTATTACAATGAAT 484 36 100.0 30 .................................... CAAATCAAATCTACATACTTCCAAATCATT 550 36 100.0 30 .................................... ATGGATGAATAAATAGTGTCCATTTTAGAC 616 36 100.0 30 .................................... TTAATGTATAAGTGGATCCCGAGATTGTGG 682 36 100.0 31 .................................... ATGACAGTTCTGATGATGATTCAGTTAATGG 749 36 100.0 30 .................................... CCGACGATCCACTAGCTGTGGAAAATGTGA 815 36 83.3 0 ...............C........C......G.GAT | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 98.7 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : AATGACGGAGTTCAGCCCCCGG # Right flank : TGGCTTCTCAACAGATCATTCATTCTGGATCATCTTCCACCACTAAAAAATAAGTTCTCCGCCTAGTATTTGCTAAGCAGGGAACTTATTGTGTTTATTTATTTAACAATTGACTTAGCCAACGCATACCCCAGCTTCTGAGCCGTTTGGGCAGTTGGATGAATCTCATGATCCTTCAAAGTGACATCCTTGTTGCTGTTAGTGATAATGTTGGGTGCGATCTGTTGGAAATTGACCACTTTGGCGCCCATTGACTTGTAGAGCCTTGCTTCAGCTGCCCGCAAGTCGTGGTAGGTGTAGCCATACATATCACTCATGTTGTCACGATTCATGCCATTGGCGTCAAACCGTGAAATTGGCAGGATGCCGTAAATCTTGGCGGACGGATTCAACTTTTGAATCATCTTAATGTTATAGCGCAGGTGGCGCATGACATTCTTCAAACTTCCCGAACCGGAATAGTTGGTGTAATCATTGGTCCCGATATGAACGAAGATGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 287676-286606 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMS01000001.1 Lentilactobacillus buchneri strain S50 NODE_1_length_610004_cov_35.517065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 287675 29 96.6 32 ............................C TTGCCGATCCACAACCGATGTAAATTCATCAA 287614 29 100.0 32 ............................. AGACAGGTGCAACTAGAGCCGCCGCAAAAATA 287553 29 100.0 32 ............................. GTTCACCCCGAAGTGTTTCAAGGCACTGGCAA 287492 29 96.6 32 ............................C AAGCGACTGAAAAAGCTAAGAGTACCAGTAAA 287431 29 96.6 32 ............................C GACTCCAAAGTCGGACCTCACCAAGAAGCAAT 287370 29 96.6 32 ............................C TCCAGGCAGGGATTTGCACCCTACAAGCCTCT 287309 29 96.6 33 ............................C CATCAGCTGATTATTTCAGGGTTTGAGACTCTG 287247 29 96.6 32 ............................C TTGATCCCGACGTTTCCACCTTTATCAAAAGC 287186 29 100.0 32 ............................. AGGAATGGCATATCGCGTCGCATCAATTGAAT 287125 29 100.0 32 ............................. AAGGCTGAAACTTACCTGAAGCGATTGATTGA 287064 29 96.6 32 ............................C TGGCGCTCGTGTTGGCGAGGTTGCCAATCTCA 287003 29 100.0 32 ............................. ATAAGAGTTGGGGGACAGCAGCCTTGCTCTCA 286942 29 100.0 32 ............................. GGTAGTCGAGCCACCGGATCCAAATACGATTA 286881 29 100.0 32 ............................. CTTCCAAGTGAGGCGGTAAGGAGCATTTTATG 286820 29 96.6 32 .......T..................... TACGGTGGCGATCACATTGACCCATACGGCTA 286759 29 89.7 32 ...........A.G...........A... TCACGGTGTCCAGATTTTTGCCGGAACTCCCA 286698 29 93.1 32 ...........A.G............... GCTCGCGCGGGACCCGGCTTCCCTGGACCCTT GGG [286674] 286634 29 89.7 0 ........T.....T..G........... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.0 32 GTATTCCCCACGTACGTAGGGGTGATCCT # Left flank : CTTTTGATCGTTTTTCCATCAGTGGTTCGATACCCGCCCAAGTCTCGGACGTTCATGGCGCCTTTCAAATCAATTTCATGCACTTTGACTCCCTGGGTTGCCACGACCTGGGCATTTGCTGGAGCAACCGATTGGATGGCTGCGCCCGTAGCGGAGAAGACGGCCAGTGCCAGGGATGCAATCAGAACAGATTTTTTCAATGTGATTTCCTCCAAACTTTTTTGATTCAGTGTTTAGTTTACGGGAGGCGTGTAATGATTTTGTTTGCATAAGGTAATGATTTGGTAAATGATGCTTAGCAGATTTTTTGCTGGATACCAGAGGATCGTGAAATAAAATGGTTGATGGAGCTGTACACTATTGGGATAATTAAAACGGCAGAATCGGCTGATTTGTTTCATGCGACTAAATAATTAAGGTCAGATGCTTTCGTATTTGCAAGTCATTGAAAATGAGTGTTTTGTCATTTTCAAATGGCTTAATGGCGGCGTTTCTTTAGT # Right flank : GCGACTAACGAACTTCAAATGATGGATTCTTAGTATTCCCCACATGTGTGGGGGCTCCTTTCTTGCAAAAAACTATTTTCACAAACGCGTTGGGTTGGCTCCAAAAAGGTGGAACACATTCAGAAAAGTTCAAGACAAAAATTAGCCTCTGATGGCGCAACAGTTGTAACCCGCCGCTCAAGTCCGGCAATAATTCTGCCGAAACTCAAAAATAGCACCTAACCAGTTGGCTTTCACCAACTAGTCAGGTGCTATTAGTATTTTGCGTAACCATCAACCAATTTCAAAACAGATACAATAATTTGAAAATGCCATATAGATTTCGTTTCTAACGATAATTGTCTAACATCTTAAACTTATGGTTGTCTTGGAAATATGCTCCAACCTTTAGCAACAATTTATCATTACCCTTAGCCGCCTCAAATTGAATTCCCAGCGGCATTTTCTGCTTGCTAACATATGTTGGTAAACTGATTGCCGGCTCTCCTGAAAGGTTGGCA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 289596-288897 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMS01000001.1 Lentilactobacillus buchneri strain S50 NODE_1_length_610004_cov_35.517065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 289595 29 96.6 32 ............................G ACTATACCGAATCGTTCATGAAAAATCAATAA 289534 29 100.0 32 ............................. ATCCACGCCTTACACCTCTACTTCTTTGGTTT 289473 29 100.0 32 ............................. TACGAACCCAAATCGTCAAAGCATCTGGCATG 289412 29 96.6 32 ............................C CAAACGCGGAAGTCTTCAACGCTAGTGAATCG 289351 29 96.6 32 ............................C ATGTATCAGCACATTGATGGGTTAAGTGGTTA 289290 29 100.0 32 ............................. AGTGAGCGCGATTGTAGACTTCATCCAATCTT 289229 29 93.1 32 ...G...........A............. TAGTCATCGTTTGCGTGTAAGTTGATGTCGCC 289168 29 89.7 32 ...G...........A............C ATACCTGCCCGCCGTTTCCTGGAACGGACCAA 289107 29 96.6 32 ...G......................... CGGATTGAGCTTGTCAAAGAACAACAGGTCAA 289046 29 96.6 32 ...G......................... GTGGTCTTCACTGATGCCAATGATATTTACCT 288985 29 96.6 32 .............A............... CCTTACGAGACCCCGCTCGCTGCTCAGTATGT 288924 28 86.2 0 .............A........GG.-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.7 32 GTATTCCCCACGTGTGTAGGGGTAATCCT # Left flank : ACCAAGGATCGTATTATTTCTATTGCGGCTGTCAAACACAGCGGAGATGGGGATCCTATCAGCTTCCAGCAACTGATTCAAATTGATCAGCCGGTTCCCCATCAGATAACCGAGTTGACGGGGATTTTGTCAGAAATGCTGACTGAACAAGGCGTTAGCTTGGAGTCGGCACTGGCATCGCTACGTGATTTTATTCAACAATTTCCGGTTGTTGGGTATAATTTGCATTTTGATGCATCATTTCTTTCTATGGCTTTCAGGAAGCTTGACCAGCCTGATTTAAGCAATCAGATGGTTGATTTGATGCCGGTGGTTAAAAAGGTTAACCAATTTCTGGATAATTATCGCCTGGAAACCGTGCTTGCAGAATATCACATCAAAAATTCTGACCCCCATCGTGCGTTAGCCGATGCGAAGGCAACTTTGTCCTTAGCGTTGAAGTTGATTGAAAATGGCGATTTGACGATTTGAGAATGGCTTTAGGACGCGGTTTGTTTAGT # Right flank : CCAATCCAAACCAAACAAAAAACGACTTCACCAACCAAAGGCAAAGCCGTTTTTCAACATCCTCAAAGATCCTTATTTCAAATACATCGCCCGCAACTTAGCAATATCGGTATTCGAAACCCTGAGGCCCTTATTCAAGAAATTATCCATCGTGCCATAATGCTTCTTCACCGCCGAGTAAGTGGCGTTGATGTAAGCAGGTTTGACATCTTCTAGTGCCTTCACTGTCTGGAGTTCCTTTTGAGAGGCGCCACTCTTCTTCAACTGAGCATAATGTTTTTCATAAACCCCCTTGGTTGCCAAATAGTCGTCGACAATCGTCAGCTTCTTGACGCCGAGTGCTGACAAGATGAAAATCGTTCCGGCACCTGCCCGGTCCTTGCCGGCTGAACAATGATACAAGACTGCGGAGTTCCCTTTATTATTCAAAAGAGTGGTGAATAGGTTGTGATAAGCGGTTCGAGCTTGTTTGGTAGTGACAAAATTTGTATAGCCCTGTT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 300150-299447 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUMS01000001.1 Lentilactobacillus buchneri strain S50 NODE_1_length_610004_cov_35.517065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 300149 29 100.0 32 ............................. ACATGGTAGGAAAAGTCTTAGCGGCACACGTT 300088 29 96.6 32 ............................C AGTCTGGAGGACTAAACAATGAAAATAACCAT 300027 29 100.0 32 ............................. AGCGATAACTCTGCTCCAAACCCTTTGGCGTT 299966 29 100.0 32 ............................. CAAGTTCTGGTTTAGAACTTTAGGAGGTGAGC 299905 29 96.6 34 ............................A CCAGATACCGGTGGCACGATGATTCCTCACGATG 299842 29 96.6 32 ............................C GAACGTTTTACCCGCTCGGACAGCTCCGTAAT 299781 29 100.0 32 ............................. AATCTGATTTCGCTGCCCGCCTCAGTAACCCT 299720 29 100.0 32 ............................. AATTTCCGTGTTGGACGGTATGGGATAGGATG 299659 29 100.0 32 ............................. CCTTCTTGGTAATCTCTTTGTATTGCTCAGGA 299598 29 100.0 33 ............................. TCTTGAATCTGTTCATCCCGCTTGGAATCTTTG 299536 29 100.0 32 ............................. CACGGTGATAGATTTACCACGTGATTGGAGCT 299475 29 86.2 0 ...A........C........A......A | ========== ====== ====== ====== ============================= ================================== ================== 12 29 98.0 32 GTATTCCCCACGTACGTAGGGGTGATCCT # Left flank : ACCACCATCTGAATTTCGCTTCAATTCTCGAGAAACCGTTGAACAACTTTTCTGGATCTCCTTGGCGATCGCACACAGTGAGTTTCCATGGCTCCGCATTAAGAATATTGTTTCTCGTTCATCTATGGTAATATGCTGGTAGTGGTTCATGGCTAGTTTCCTTTCATGATTGTTCTCGCAAACATCATTTTACAGGAATTTGGCCATGAGCCATTCTTTATTTAATTAGTGTTGCACTTAAAGTGTAAATTCAAGCTTAAAAGTTAAAAGCTGGACTAAGTCAAAATTGAATTAAACTTTGGCTTAGTCCAGCTTTGCTATAGTTATTCGGCCTTCGAATTCGATAGGTAATCCCTTAGATGCTATACTTAAACAAGAAAATTCTTTACTAAAGAGGTTAAGCTGAACTATTTCATCGATAATATTTTGTCCAGGTTAAAGGTCATTGAAAATGAGTGTTTTGTTATTTTCAAATGGCTCAACGACGGCGTTTGTTTAGT # Right flank : CAATTACCCCCTTATTACCTACCGTACGGGGGTCAAGCATTTAGTGAGCTTATAAATGAAGTCCACTAGTAGAAAAGGAGGCAAGTGTACTATTTTACTTGTCTCCTTTTTGTAACCGCGAAAGTTCCCAGGGAAAGTTGATAGCCAATCCTAACAGGTGGCCCATCTCCGGAAAAAGCTAACAATAATAATGCCTGTGATGTCACTCACACACTCAAAGAAAGCGCTATAATGAAATTGAATTTTATGCCATAATTTGAATCACTGTTTGCAATCAACTCGGTAGCTAAGATTGTTTCTCAAAGTTCAATTGACCATCCATAAGTGATAATAAGAAACAATATAACCCACCACTAGGAGGCCCACCCAATGCCAACCCTATCAACAAAAGCCACAACCCTCTGGGCCAAAAAGCGCCCAACCGAAAACGGCAAACAACTATGGCTGCCGCTCATTATCCATCTAATCGATACCCAAAACGTCATTAACTACCTCTTCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //