Array 1 30446-29990 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWP01000027.1 Chromobacterium subtsugae strain MWU2920 contig00027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30445 29 100.0 32 ............................. ATTCGTCGTGTCGATATTCATGATGCTAATAC 30384 29 100.0 32 ............................. AGGTGACGGCCGTCTGGCGCCGGGTGTACTGC 30323 29 100.0 32 ............................. GCATCGCGCAATTTATGCCCGGCACGGCGGCT 30262 29 100.0 32 ............................. ATTCAAGGGTAACATCCACTTGGAGATAGATC 30201 29 100.0 32 ............................. GTCAATGTGACCGCGAAAAACAAGGGCCTCGC 30140 29 100.0 32 ............................. CCGAGGTGGAACCGTATTGGGTCTATGCCTTG 30079 29 100.0 32 ............................. TTTGTGCGTAGATTGGCGAGCCACTGTGTCAG 30018 29 75.9 0 ............T..T...C.C..C.GG. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : GGGATGAACCGCCCGCTGCACCGGACTCGGGCATCTGCTGGT # Right flank : GCTGAAGTGGCTGGGCGCGGCGTATTTGACGTATTTGGGCGCGGGGTTGTTGCGGGCTGGAAATAAAGGGGCGGCGACGCTGCCCAATTCCAAGGTCATCGCTTTTTTGATTGTCTACTTTCCGCAATTCATCCAGCCGGGGCGCGATACGGCCGGCCAGCTGCTGCTGCTGGGGACGCTGTTTTTGCTGACGGTGGGCGCGGTGTTTCTGCTGTGCATGGCGGCGGCGCTGACGGTGGGCCGCGCCATGCCGCGCGGAGGGGGGGGCTGGCTCAGTCTGGCGTGCGGCTGCTGCCTGATCGCCTGCGGGCTGTATTCCGCGCTGGCTTGAGGCTTAGGCCAGCGCGCGTTCCAGCCAGCGCCACAGTTCGGGCGCGGCGAAGTCGGCGATGACGGCGGCCGCGCCGGCTTCCAGCAGCTTTTGCGGCGGCAGCGCGCCGGCGATGCCATAGCTGTGGATGCCGGCGGCGCAGGCCGCGCGCATGCCGGACGGCGAATCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 421-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWP01000036.1 Chromobacterium subtsugae strain MWU2920 contig00036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 420 29 100.0 32 ............................. AGGTAATTGGCGCACGTTGGCATTTTGTAGCC 359 29 100.0 32 ............................. TTTGCCCCCATTGTGGTTATTATACGCCTCCG 298 29 100.0 32 ............................. CCGCCTATCCCAGTGGGCAAAACACTCTGGTT 237 29 100.0 32 ............................. CCCGCTGCACCGGACTCGGGCATCTGCTGATC 176 29 100.0 32 ............................. GCAGATGACATCTGTGCCGTCTACGGCTGTGC 115 29 100.0 32 ............................. GCAGATGACATCTGTGCCGTCTACGGCTGTGC 54 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAGACGATGCTGGACGCCGGCGGCCTGGACAAACCGGAAGCCCAAGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTGGGCAACTACAACCGCAAGATTCGAGACTACCTGTGGCAGCAGGTGGAGGAGGGGCTGGAAGACGGCAATGCGGTAATGGCCTGGCAGGCCGTCACCGAGGCAGGCTTCGATTTCGTCACCCTAGGCGCCAACCGGCGGATGCCGGCCGAGTTCGACGGCGCCAAGCTGGTGTCTTTCCTACCTCCACCCGCGCCGGCAGAGGCAGGGGAATAGCGTCTGCATCCATTGATGGGAAAGGAGAGTTTTGTTCTTTAAAAATCGGTAGATTTTTGGATGGTGTTTTTATTTTTTAAAATCAATGGCTTGAAATTGGT # Right flank : GGAGATGACTGCCGAGATGTCCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10551-10156 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWP01000036.1 Chromobacterium subtsugae strain MWU2920 contig00036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10550 29 100.0 32 ............................. ACGACGCCGGTCACGCTGAATCTGAAGGGCGT 10489 29 100.0 32 ............................. CCAACAGCGGCCCGATCTGGGAAATGGTAGTA 10428 29 100.0 32 ............................. TCTAACAGAGCAGTTACGCCAACGAAGCCAAA 10367 29 100.0 32 ............................. ATCCCTGCAGCGATGTCAGAGAGTTTAGGTTC 10306 29 100.0 32 ............................. GCGACCTATCAGCCCTGGTACGAGTTTGGCGA 10245 29 96.6 32 ............................C GCTGGGCATGGGTTGCCCCGAGATCCGACGCG 10184 29 89.7 0 ........................GG..A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CGTGGGGATGAACCTTCCTAGCGAGCTTTTTGGCCTCGGCGTTTGG # Right flank : CGGCTTGCAAACGTGATGTGCGGCTTGTTTTTCTGGATGGAATGTCTCGGCTTGTGCCTGCCTGGCAAAATGCCGATAATGATTGAGCAAATTGCCTGATTGGAGATTGCCATGCCCGCACGCGCCGCATTCCGGCCCGACCCCGTTCTCATCCGCCGCGCCACGGTCAGGGAGGGAGAGCGCCGCTCCCGCCAGTCCGACTTGCTGGGCGCGCCGGTGAGCAGCGATTACGACATCGTGAAAGAGGTAGCCAAGGGCTTGGATCCCGGCGTGATCACTCGCCTGACCGATGAGGGGCTGACCCGGCGCGAGCTGGAGTTCGTCATTCCGCCGCGTACGCTGACCCACCGCATCAAAAACGGCGAACGCCTGAGCACCGACGAATCCGAACGCAGCGTGCGGCTGGTCAACCTGCTGCTGCAGGCCGAGCAGCTGCTGGGAGGCAAGGAGGCGGCAACCGCCTGGCTGCGCCAGCCATTGCGCCGTTTCGATGGCCGCAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 230794-231371 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWP01000007.1 Chromobacterium subtsugae strain MWU2920 contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230794 29 100.0 32 ............................. CCCGCCGCCGCGCCTAGTCCGACCTGCGCCGC 230855 29 96.6 32 ............................A GGCAGACCACCGTGGCGCCGGCGCGCGCGCTC 230916 29 100.0 32 ............................. AGACCTGTTATTCTCGATCAAATCGCACTGAG 230977 29 100.0 32 ............................. CATTTTTCTCTCCTCCTGCCCGGATAGATAGC 231038 29 100.0 32 ............................. TGCGTGTTTGCCGGCAGCCAGTTGCCGGCCGG 231099 29 96.6 32 ..........C.................. ATCTCGCCCGGGATGCCATCCGGCGCCATCGC 231160 29 93.1 32 .C........C.................. GTATAGGAGCATTTATGGGCATAAAGCCAAAA 231221 29 93.1 32 .C........C.................. GCGGAACGCAACGTGGTGCGGCCCTATTTCGG 231282 29 96.6 32 ..........C.................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 231343 29 89.7 0 ..........C..............C.A. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.6 32 GTGTTCCCCATGCGAGTGGGGATGAACCG # Left flank : GCGTGCGCGCGCTCCACCGCCTCGCGGATGTCCTTGACCCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGGATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACGGCCAGGCTTAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCTTGCATGCTTGCGGGAGGGCTGCAGGTTATGGATCTGGGCGATTTGAGCGGAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTGTCTTTAAAAATCAGTGGATTGAAAATGGT # Right flank : GCTTGTCTCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATTACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGTTCGGTGTATTCCACTTCGCGGACGACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCATCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCGACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGAACCACCACGTCGAACTTGTCGTCCGCGCGGTATACGGCTTCGCTGCCGGCGCCGGTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCATGCGAGTGGGGATGAACCG # Alternate repeat : GTTCCCCACGCGAGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235722-236116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCWP01000007.1 Chromobacterium subtsugae strain MWU2920 contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235722 29 100.0 32 ............................. TTCGACCTTGATAATTAAATGCCGCACCCATA 235783 29 100.0 32 ............................. CACCCGTAACGATCATGCATGGCTCGTGGCGC 235844 29 100.0 32 ............................. CCGAGCCGTTCATCCAGCCGACGCGCCCGCAT 235905 29 100.0 32 ............................. CCATGGCCTGGTTCAAACAGCTGTCGTTCTAC 235966 29 100.0 32 ............................. GACCCATCGTGCACCAGCATGGTACATGCACC 236027 29 100.0 32 ............................. GCAAAATGACGACAAACGATGATTGGAAATCC 236088 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : TTTTCCAACGCCTACGCCGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGCTGCCGCAACTGCAATGCGCCGACCGCGTCTTCCGCCCGGTTCACCAGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTGAGCGCCAACTTCGGCGCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGGTGGAGCTGGCCGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGGGGCTGATGCGCGGCGATAATGCCTTTGTCGTTTTGCGGGCGCTGTGCCTGCGGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGAAGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAAATTGGT # Right flank : GCGGCTCTAGCGGGCACGAAGGGCGTGAGCCGGTGTTCCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //