Array 1 189862-190609 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGP01000040.1 Pasteurella multocida strain 657BPM isolate swab isolate 4 contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 189862 28 100.0 32 ............................ TCGCATTGCAGAAGATTACTTGTGAAAGATAT 189922 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 189982 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 190043 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 190103 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 190163 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 190223 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 190283 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 190343 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 190403 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 190463 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 190523 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 190583 27 96.4 0 ...........................- | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19948-22074 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGP01000036.1 Pasteurella multocida strain 657BPM isolate swab isolate 4 contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19948 28 100.0 32 ............................ GCAATGTGAGTCATGCTAATTTTACGATTATC 20008 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 20068 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 20128 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 20188 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 20248 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 20308 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 20368 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 20428 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 20488 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 20548 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 20608 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 20668 28 100.0 32 ............................ GTGCCGAAATTGCACAAAGCGGACTTTGCACA 20728 28 100.0 32 ............................ TGTACCCGAAACAACTTGCAGATTAGCGCGAG 20788 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 20848 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 20908 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 20968 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 21028 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 21088 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 21148 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 21208 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 21268 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 21328 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 21388 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 21448 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 21508 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 21568 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 21628 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 21688 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 21748 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 21808 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 21868 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 21928 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 21988 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 22048 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.1 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //