Array 1 110788-108684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZB010000009.1 Salmonella enterica strain 20REF-1022 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110787 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 110726 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 110665 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 110604 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 110543 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 110482 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 110421 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 110360 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 110299 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 110238 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 110177 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 110116 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 110055 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 109994 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 109933 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 109872 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 109811 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 109750 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 109689 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 109628 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 109567 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 109506 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 109445 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 109384 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 109323 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 109262 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 109201 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 109140 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 109079 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 109018 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108957 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 108896 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 108835 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 108774 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 108713 29 100.0 0 ............................. | A [108686] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129317-127459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZB010000009.1 Salmonella enterica strain 20REF-1022 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129316 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 129255 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 129194 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 129133 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 129072 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 129011 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 128950 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 128889 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 128828 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 128767 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 128706 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 128645 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 128584 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 128523 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 128462 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 128401 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 128340 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 128279 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 128218 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 128157 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 128096 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 128035 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 127974 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 127913 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 127852 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 127791 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 127730 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 127669 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 127608 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 127547 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 127486 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //