Array 1 2872694-2872366 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040234.1 Citrobacter sp. TBCP-5362 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2872693 28 100.0 32 ............................ CGCCTTGAACCTCAATTCTTGTCCAGTTTCCA 2872633 28 100.0 32 ............................ GCAGTATAAATATCAGCGGGACATGATACAGC 2872573 28 100.0 32 ............................ ATAGCAGCGAGGCGCTCCAGTTCTCCGGCAGC 2872513 28 100.0 32 ............................ ATGCTCGCGTACTGGTTCGTGGCGATATCGCC 2872453 28 100.0 32 ............................ AAGTTGATCACCGTTGTTCGCCGTAGCGTTTC 2872393 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCACAGGGCGCGCGTGCTGAAGTTCACTTTACACCGCGTTTGATCACTACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGGGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGCTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTATTCCCGTCCCGCCGTGGATTGCTGCCGTCCGTACGCGCACTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAAGATTAAAACAGAGCGCAATATACCCCTTTTTATTTTATGTTACTAACTTATTGATTTTATTTTATATATACAACTTGGGTGAAAAAGGGTCTGACAGGAAGACGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TGAATGTAGAAGGAAGGGACGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCACT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2885656-2884003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040234.1 Citrobacter sp. TBCP-5362 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2885655 28 100.0 33 ............................ AAGAACGATGAACCTGTAAGTGATCGTGATGAG 2885594 28 100.0 32 ............................ CAGCGCGCCACTCCCTTCACGGCACCACGAAA 2885534 28 100.0 33 ............................ CTGAGCCACCGCTACGGTAAACCCCTGTCGGAT 2885473 28 100.0 32 ............................ GCGACAGGTTCAGAACCTGCTGGGATGCGACT 2885413 28 100.0 32 ............................ ACGTCATTTTGTTCAATCTCGATTTCCCTGAT 2885353 28 100.0 32 ............................ GGGTATTATTAATGTGCTTGAGAGAGTTCCTT 2885293 28 100.0 33 ............................ GCCGGGCGGCTGGCATTCATCAACCCGCTCACC 2885232 28 100.0 32 ............................ TGGAAGCCGCAGGCAAATTCCCAAAACGCTGG 2885172 28 100.0 33 ............................ CAATAGGCACGAGAACGGCGCACCATTCGATAT 2885111 28 100.0 32 ............................ TCTAATGTGTGGACACAATGTGGACATTCCAC 2885051 28 100.0 32 ............................ TTTGATGGTTTGCCCGCGCATATCAGGAATAA 2884991 28 100.0 32 ............................ AGTACGTAGGTTCGTCTGAGTGGATGCCGGAA 2884931 28 100.0 32 ............................ ACAGCCAGAAAATGGCATTTATGGAACGCTAT 2884871 28 100.0 32 ............................ AGTGACTGCCCACGGAAACAATCATAACTTGA 2884811 28 100.0 32 ............................ AGTTATCGCCCGACAGTTTGGCGCCAGCATCG 2884751 28 100.0 32 ............................ TGGTAATTAGCACGTAATGCATTAGCCGAAGC 2884691 28 100.0 32 ............................ TGAGGTGATATATCCGATTAATGGTTGGAAAT 2884631 28 100.0 33 ............................ AGGTACAGAGTAAGTCGGCATCGGCCGGGCACA 2884570 28 100.0 32 ............................ TTAAGGCGATACACGCAGCCGCCGATAGTTCC 2884510 28 100.0 32 ............................ TGTCCCGGGGCAGTGGATTGCGTGCAGTAAAG 2884450 28 100.0 32 ............................ CCACACCGAGCGGATTTTGCCAACAATGGCAG 2884390 28 100.0 32 ............................ AGCGACAAGCCGACAGAAGATGATATTTGGGC 2884330 28 100.0 32 ............................ CAAACGGGAAAGTCGATAAAATTATCGAGCTT 2884270 28 100.0 32 ............................ GTATCGCCGACTGCGTCCCGATGCGGGAGAAA 2884210 28 100.0 32 ............................ GCAACTCAGGATGATCCTTGTTCCGGGTTCAC 2884150 28 100.0 32 ............................ AAGAATACGGCGCATCATCGGCGTGAAATCCG 2884090 28 100.0 32 ............................ CGACGCGGAAGATCATAAAATCGCGTGCCGCT 2884030 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATCAGAAAGGCGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCTGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGTTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCTCTGGATAAAGAGAAAAATGAGCTGACGTATGGCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCCGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGCTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : CCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCGGAGCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCAGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTTGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGACCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //