Array 1 47696-46489 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHSD010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCMOA-C2/C3-TMB-25 NODE_14_length_117571_cov_25.380070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 47695 29 100.0 32 ............................. CGCCCCTCACCACCGTGGCCGCGTGCCGTTCG 47634 29 100.0 32 ............................. GCAACTATGTTTAACGCGGCCAATAACGATTT 47573 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 47512 29 100.0 32 ............................. ATTTTCCTCTTGATCCGACTGATAAAACAAAC 47451 29 100.0 32 ............................. CCAGTCTGTATGAGGCTGCGATTGTGTGTTTT 47390 29 100.0 32 ............................. CCTGTAAAACTGATTTCAGGCTGGTTAGTGAC 47329 29 100.0 32 ............................. TAACGCCCGGCGGTATAGTCGATTTCGTGCTG 47268 29 100.0 32 ............................. ATTTATCCATTAGTCCCATAGCTGAGTCTCTT 47207 29 100.0 32 ............................. TCAACGTTACGACCGAACCACACCGATAAGAA 47146 29 100.0 32 ............................. GCACGGGTACGCCGAAAATCGGGGGCTATGCC 47085 29 100.0 32 ............................. GGGATCGGCGAGTCGTTCGTGTTTGCTATTTC 47024 29 100.0 32 ............................. GTCAACGCCAATGACCGGGAATTATCCCGGAA 46963 29 100.0 50 ............................. TTTCCGCTCTCTCTCGTCCATCATTCCGCGCCGGCATAACTGACGATCAG 46884 29 100.0 32 ............................. GCGCGCAACCCGGCATTTCACAGAAAATTTTT 46823 29 100.0 32 ............................. CTGGTCCCGCGTGTATACCAGTATTTACCGTG 46762 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 46701 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 46640 29 96.6 32 ..........T.................. GCGTATGAGCGCCCAGCAGCGAACGTGAATCT 46579 29 100.0 32 ............................. CCGCTTTGCTGGCAACATTCACCACATAGCAT 46518 29 96.6 0 ............T................ | A [46491] ========== ====== ====== ====== ============================= ================================================== ================== 20 29 99.7 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTAGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65043-63856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHSD010000014.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCMOA-C2/C3-TMB-25 NODE_14_length_117571_cov_25.380070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65042 29 100.0 32 ............................. CGTGCAGGGGGTTAAATAAAGAACACGCTGAC 64981 29 100.0 32 ............................. CGCTTGGCGGTTATCATGGCCGGTAATGACTC 64920 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 64859 29 100.0 32 ............................. CGGGGATTAGCTCTAAAAATATTTTTATTTTG 64798 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 64737 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 64676 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 64615 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 64554 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 64493 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 64432 29 100.0 32 ............................. CAGCAGGACGACGACCCGCGCCCCCGCGTCGG 64371 29 93.1 32 A...........T................ GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 64310 29 89.7 32 A...C.......T................ CGGACATTGTTCGTGAGCGAGCTGTTGTTCGT 64249 29 93.1 32 A...........T................ ACGGGTTAGCGCCTGCGGATAATGCCCAGCAC 64188 29 89.7 32 A...........T........G....... GTGGCAATGGTATCGCTATACGAAAGCGACGT 64127 29 96.6 32 .......T..................... TTCGTGTATTTTGAGTCGTTTACCGTATCTGC 64066 29 100.0 32 ............................. CGCGCCGCACGTTCGGTAGCGTGGCTGAGTTA 64005 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 63944 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 63883 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //