Array 1 73433-73750 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MANK01000003.1 Helicobacter pullorum strain NAP14B36 contig003, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence            	Spacer_Sequence                                	Insertion/Deletion
==========	======	======	======	===========================	===============================================	==================
     73433	    27	 100.0	    46	...........................	GATTAAGACCCTTTTATGTCTCTTATTGAATCTCAACTCCACATCC 	
     73506	    27	 100.0	    45	...........................	GATTAAGACTTTGCATATGTCTTATGTAGATAGTGTTAAAAGAGA  	
     73578	    27	 100.0	    45	...........................	GATTAAGACAGTATTAGTATGCACTTTATATCTAGGGATATTTGT  	
     73650	    27	 100.0	    47	...........................	GATTAAGACCAAATCTAATTTTATTCTCATAGATTGCTATCTTATCT	
     73724	    27	 100.0	     0	...........................	|                                              	
==========	======	======	======	===========================	===============================================	==================
         5	    27	 100.0	    46	ATTTAACAACACGACCCGATTCAAGGG	                                               	       

# Left flank :   AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTTTCATTTTTTTAAGCCCTACAACACCGATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCGCATAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT
# Right flank :  |

# Questionable array : NO	 Score: 3.06
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTAACAACACGACCCGATTCAAGGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.27,0   Confidence: MEDIUM] 

# Array family : NA
//


Array 1 9728-9322 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MANK01000040.1 Helicobacter pullorum strain NAP14B36 contig040, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	====================================	=========================================	==================
      9727	    36	 100.0	    36	....................................	CTGTGTAGCTTAACGGTCTCATATCTTACGCAATAG     	
      9655	    36	  97.2	    39	......................G.............	TTTGCATTTGAATTCGTATTCTTTAAAATATTTGTTAGG  	
      9580	    36	 100.0	    41	....................................	TTTATCAACACCACATTTTTAATTTCTGAATTATGTTTTTC	
      9503	    36	 100.0	    39	....................................	AATCGATAAACTTCTCCTAAAGAATAGAACTCAGAATCT  	
      9428	    36	 100.0	    34	....................................	AAATTTGCTTCTCCAAAAGGAGGAACATACTATG       	
      9358	    36	  72.2	     0	............A...TAT.....AA..T....TTT	|                                        	C [9325]
==========	======	======	======	====================================	=========================================	==================
         6	    36	  94.9	    38	ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC	                                         	       

# Left flank :   GGATTAAGACACTACATCGCCCTCACACTCAAACAATCCGCAAAT
# Right flank :  TCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCTATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCGCAAAATGTATTGAAAAACGAATAAGAAAAATACTACCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTTTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGCGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTCCAAGAAATTATGGGAATCTACCTTCCACCCCAAACCAAAAGCAATCTCAAACTAGAAAATCTCGATAAATCTCTTTTGC

# Questionable array : NO	 Score: 3.01
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-3.00,-4.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [11-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [78.3-43.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,0.78   Confidence: MEDIUM] 

# Array family : NA
//