Array 1 2714672-2713665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010236.1 Escherichia coli strain S42 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2714671 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 2714610 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 2714549 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 2714488 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 2714427 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 2714366 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 2714305 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 2714244 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 2714183 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 2714122 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 2714061 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 2714000 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 2713939 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 2713876 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 2713815 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 2713754 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 2713693 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2741192-2740370 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010236.1 Escherichia coli strain S42 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2741191 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 2741130 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 2741069 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 2741008 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 2740947 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 2740886 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 2740825 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 2740764 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 2740703 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 2740642 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 2740581 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 2740520 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 2740459 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 2740398 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //